CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 77

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1277F77FF4469FsynttCttT24012401113669-13671
ORF1ab/nsp1277F77LF4469LnonsynTtcCtc149980.65771813669-13671
ORF1ab/nsp1277F77LF4469LnonsynttCttA149500.3355713669-13671
ORF1ab/nsp1277F77LF4469LnonsynTtCCtT14910.0067114113669-13671
ORF1ab/nsp1277F77SF4469SnonsyntTctCc1161140.98275913669-13671
ORF1ab/nsp1277F77SF4469SnonsyntTCtCT11610.0086206913669-13671
ORF1ab/nsp1277F77SF4469SnonsyntTCtCA11610.0086206913669-13671
ORF1ab/nsp1277F77YF4469YnonsyntTctAc71700.98591513669-13671
ORF1ab/nsp1277F77YF4469YnonsyntTCtAT7110.014084513669-13671
ORF1ab/nsp1277F77CF4469CnonsyntTctGc6464113669-13671
ORF1ab/nsp1277F77VF4469VnonsynTtcGtc41390.95121913669-13671
ORF1ab/nsp1277F77VF4469VnonsynTtCGtT4110.024390213669-13671
ORF1ab/nsp1277F77VF4469VnonsynTtCGtA4110.024390213669-13671
ORF1ab/nsp1277F77delF4469deldelTTC---2222113669-13671
ORF1ab/nsp1277F77IF4469InonsynTtcAtc44113669-13671
ORF1ab/nsp1277F77del2F4469del2deltTCt--33113669-13671
ORF1ab/nsp1277F77XF4469XnonsyntTCtAA320.66666713669-13671
ORF1ab/nsp1277F77XF4469XnonsyntTCtGA310.33333313669-13671
ORF1ab/nsp1277F77DF4469DnonsynTTCGAT210.513669-13671
ORF1ab/nsp1277F77DF4469DnonsynTTcGAc210.513669-13671
ORF1ab/nsp1277F77del1F4469del1delTtc-tc210.513669-13671
ORF1ab/nsp1277F77del1F4469del1delttCtt-210.513669-13671
ORF1ab/nsp1277F77EF4469EnonsynTTCGAA11113669-13671

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1277F77FttCttT24012401All0.000459
ORF1ab/nsp1277F77FttCttT12201220B.1.177.730.690827
ORF1ab/nsp1277F77FttCttT510510B.1.1770.006715
ORF1ab/nsp1277F77FttCttT269269B.1.177.230.87055
ORF1ab/nsp1277F77FttCttT209209B.1.1.70.000187
ORF1ab/nsp1277F77LTtcCtc98149All0.000019
ORF1ab/nsp1277F77LttCttA50149All0.00001
ORF1ab/nsp1277F77LTtCCtT1149All0
ORF1ab/nsp1277F77StTctCc114116All0.000022
ORF1ab/nsp1277F77StTCtCT1116All0
ORF1ab/nsp1277F77StTCtCA1116All0
ORF1ab/nsp1277F77YtTctAc7071All0.000013
ORF1ab/nsp1277F77YtTCtAT171All0
ORF1ab/nsp1277F77YtTctAc6666B.1.1.70.000059
ORF1ab/nsp1277F77CtTctGc6464All0.000012
ORF1ab/nsp1277F77CtTctGc5151B.1.20.000449
ORF1ab/nsp1277F77VTtcGtc3941All0.000007
ORF1ab/nsp1277F77VTtCGtA141All0
ORF1ab/nsp1277F77VTtCGtT141All0
ORF1ab/nsp1277F77FttCttT3131AY.40.000048
ORF1ab/nsp1277F77LTtcCtc2929AY.30.000288
ORF1ab/nsp1277F77StTctCc2525B.1.1.3690.011156
ORF1ab/nsp1277F77delTTC---2222All0.000004
ORF1ab/nsp1277F77LttCttA1720AY.40.000026
ORF1ab/nsp1277F77LTtcCtc320AY.40.000005
ORF1ab/nsp1277F77VTtcGtc2020B.1.1.70.000018
ORF1ab/nsp1277F77FttCttT1717B.10.000156
ORF1ab/nsp1277F77FttCttT1515B.1.10.000272
ORF1ab/nsp1277F77FttCttT1414B.1.617.20.000053
ORF1ab/nsp1277F77StTctCc1414P.10.000221
ORF1ab/nsp1277F77StTctCc1313AY.260.000368
ORF1ab/nsp1277F77LTtcCtc1213B.1.1.70.000011
ORF1ab/nsp1277F77LttCttA113B.1.1.70.000001
ORF1ab/nsp1277F77FttCttT1111B.1.4290.000259
ORF1ab/nsp1277F77LTtcCtc711B.1.617.20.000026
ORF1ab/nsp1277F77LttCttA411B.1.617.20.000015
ORF1ab/nsp1277F77StTctCc1010B.1.1.70.000009
ORF1ab/nsp1277F77StTctCc99AY.40.000014
ORF1ab/nsp1277F77LTtcCtc88AY.1000.000368
ORF1ab/nsp1277F77VTtcGtc88AY.440.000049
ORF1ab/nsp1277F77FttCttT88B.1.3510.000238
ORF1ab/nsp1277F77StTctCc88B.1.6210.000708
ORF1ab/nsp1277F77FttCttT77AY.250.000042
ORF1ab/nsp1277F77LTtcCtc77AY.4.20.000152
ORF1ab/nsp1277F77LttCttA47B.10.000037
ORF1ab/nsp1277F77LTtcCtc37B.10.000027
ORF1ab/nsp1277F77delTTC---77B.1.1.70.000006
ORF1ab/nsp1277F77FttCttT77B.1.220.009223
ORF1ab/nsp1277F77StTctCc66AY.1020.000159
ORF1ab/nsp1277F77LTtcCtc56AY.1030.000031
ORF1ab/nsp1277F77LttCttA16AY.1030.000006
ORF1ab/nsp1277F77LttCttA66B.1.1.5190.000238
ORF1ab/nsp1277F77FttCttT55AY.1030.000031
ORF1ab/nsp1277F77FttCttT55AY.30.00005
ORF1ab/nsp1277F77LTtcCtc55AY.340.000485
ORF1ab/nsp1277F77VTtcGtc35B.10.000027
ORF1ab/nsp1277F77VTtCGtT15B.10.000009
ORF1ab/nsp1277F77VTtCGtA15B.10.000009
ORF1ab/nsp1277F77CtTctGc55B.1.1.70.000004
ORF1ab/nsp1277F77LttCttA45B.1.20.000035
ORF1ab/nsp1277F77LTtcCtc15B.1.20.000009
ORF1ab/nsp1277F77ITtcAtc44All0.000001
ORF1ab/nsp1277F77LTtcCtc44AY.250.000024
ORF1ab/nsp1277F77StTctCc34B.10.000027
ORF1ab/nsp1277F77StTCtCT14B.10.000009
ORF1ab/nsp1277F77FttCttT44B.1.1600.000125
ORF1ab/nsp1277F77FttCttT44B.1.160.200.035714
ORF1ab/nsp1277F77LTtcCtc34P.10.000047
ORF1ab/nsp1277F77LttCttA14P.10.000016
ORF1ab/nsp1277F77del2tTCt--33All0.000001
ORF1ab/nsp1277F77XtTCtAA23All0
ORF1ab/nsp1277F77XtTCtGA13All0
ORF1ab/nsp1277F77FttCttT33AY.1000.000138
ORF1ab/nsp1277F77CtTctGc33AY.290.000047
ORF1ab/nsp1277F77FttCttT33AY.99.20.000276
ORF1ab/nsp1277F77FttCttT33B0.000383
ORF1ab/nsp1277F77LTtcCtc23B.1.1770.000026
ORF1ab/nsp1277F77LttCttA13B.1.1770.000013
ORF1ab/nsp1277F77FttCttT33B.1.360.000438
ORF1ab/nsp1277F77StTctCc33D.20.000225
ORF1ab/nsp1277F77DTTCGAT12All0
ORF1ab/nsp1277F77DTTcGAc12All0
ORF1ab/nsp1277F77del1Ttc-tc12All0
ORF1ab/nsp1277F77del1ttCtt-12All0
ORF1ab/nsp1277F77FttCttT22AY.200.000078
ORF1ab/nsp1277F77FttCttT22AY.230.000139
ORF1ab/nsp1277F77LttCttA12AY.420.00004
ORF1ab/nsp1277F77LTtcCtc12AY.420.00004
ORF1ab/nsp1277F77StTctCc22AY.430.000009
ORF1ab/nsp1277F77FttCttT22AY.440.000012
ORF1ab/nsp1277F77del2tTCt--22AY.440.000012
ORF1ab/nsp1277F77VTtcGtc22AY.450.000243
ORF1ab/nsp1277F77FttCttT22AY.930.000546
ORF1ab/nsp1277F77FttCttT22AY.98.10.000097
ORF1ab/nsp1277F77YtTCtAT12B.10.000009
ORF1ab/nsp1277F77XtTCtAA12B.10.000009
ORF1ab/nsp1277F77YtTctAc12B.10.000009
ORF1ab/nsp1277F77XtTCtGA12B.10.000009
ORF1ab/nsp1277F77DTTcGAc12B.10.000009
ORF1ab/nsp1277F77DTTCGAT12B.10.000009
ORF1ab/nsp1277F77LttCttA22B.1.10.000036
ORF1ab/nsp1277F77VTtcGtc22B.1.1.170.033333
ORF1ab/nsp1277F77LttCttA22B.1.1.2220.000408
ORF1ab/nsp1277F77StTctCc12B.1.2210.000071
ORF1ab/nsp1277F77StTCtCA12B.1.2210.000071
ORF1ab/nsp1277F77FttCttT22B.1.2410.001623
ORF1ab/nsp1277F77StTctCc22B.1.2430.000139
ORF1ab/nsp1277F77FttCttT22B.1.2930.025
ORF1ab/nsp1277F77StTctCc22B.1.617.20.000008
ORF1ab/nsp1277F77FttCttT22P.1.10.000635
ORF1ab/nsp1277F77FttCttT11A.210.00277
ORF1ab/nsp1277F77StTctCc11AE.50.018519
ORF1ab/nsp1277F77ETTCGAA11All0
ORF1ab/nsp1277F77FttCttT11AY.1020.000027
ORF1ab/nsp1277F77delTTC---11AY.1080.001103
ORF1ab/nsp1277F77FttCttT11AY.1160.000287
ORF1ab/nsp1277F77LTtcCtc11AY.1180.000063
ORF1ab/nsp1277F77FttCttT11AY.1180.000063
ORF1ab/nsp1277F77FttCttT11AY.1190.000035
ORF1ab/nsp1277F77StTctCc11AY.1190.000035
ORF1ab/nsp1277F77delTTC---11AY.1200.000037
ORF1ab/nsp1277F77StTctCc11AY.1200.000037
ORF1ab/nsp1277F77delTTC---11AY.120.10.000321
ORF1ab/nsp1277F77FttCttT11AY.1210.000135
ORF1ab/nsp1277F77LttCttA11AY.160.00038
ORF1ab/nsp1277F77FttCttT11AY.160.00038
ORF1ab/nsp1277F77StTctCc11AY.200.000039
ORF1ab/nsp1277F77LTtcCtc11AY.230.00007
ORF1ab/nsp1277F77CtTctGc11AY.23.10.000417
ORF1ab/nsp1277F77delTTC---11AY.250.000006
ORF1ab/nsp1277F77StTctCc11AY.250.000006
ORF1ab/nsp1277F77ITtcAtc11AY.250.000006
ORF1ab/nsp1277F77FttCttT11AY.260.000028
ORF1ab/nsp1277F77StTctCc11AY.390.000025
ORF1ab/nsp1277F77LTtcCtc11AY.390.000025
ORF1ab/nsp1277F77FttCttT11AY.390.000025
ORF1ab/nsp1277F77VTtcGtc11AY.40.000002
ORF1ab/nsp1277F77FttCttT11AY.4.20.000022
ORF1ab/nsp1277F77StTctCc11AY.4.20.000022
ORF1ab/nsp1277F77FttCttT11AY.4.50.000107
ORF1ab/nsp1277F77FttCttT11AY.430.000004
ORF1ab/nsp1277F77StTctCc11AY.440.000006
ORF1ab/nsp1277F77ITtcAtc11AY.440.000006
ORF1ab/nsp1277F77StTctCc11AY.450.000122
ORF1ab/nsp1277F77FttCttT11AY.50.000021
ORF1ab/nsp1277F77delTTC---11AY.50.000021
ORF1ab/nsp1277F77del1ttCtt-11AY.540.000095
ORF1ab/nsp1277F77LTtcCtc11AY.580.000907
ORF1ab/nsp1277F77FttCttT11AY.60.000041
ORF1ab/nsp1277F77delTTC---11AY.660.00107
ORF1ab/nsp1277F77LTtcCtc11AY.680.000274
ORF1ab/nsp1277F77CtTctGc11AY.730.000665
ORF1ab/nsp1277F77LttCttA11AY.750.000056
ORF1ab/nsp1277F77LTtCCtT11AY.790.001211
ORF1ab/nsp1277F77ITtcAtc11AY.9.20.000037
ORF1ab/nsp1277F77delTTC---11AY.990.001049
ORF1ab/nsp1277F77del1Ttc-tc11B.10.000009
ORF1ab/nsp1277F77CtTctGc11B.10.000009
ORF1ab/nsp1277F77ETTCGAA11B.10.000009
ORF1ab/nsp1277F77delTTC---11B.1.1.10.000327
ORF1ab/nsp1277F77FttCttT11B.1.1.10.000327
ORF1ab/nsp1277F77delTTC---11B.1.1.1390.022727
ORF1ab/nsp1277F77FttCttT11B.1.1.1700.001247
ORF1ab/nsp1277F77StTctCc11B.1.1.2220.000204
ORF1ab/nsp1277F77FttCttT11B.1.1.2310.003096
ORF1ab/nsp1277F77LTtcCtc11B.1.1.250.000569
ORF1ab/nsp1277F77FttCttT11B.1.1.2940.001266
ORF1ab/nsp1277F77delTTC---11B.1.1.3480.000796
ORF1ab/nsp1277F77StTctCc11B.1.1.370.000193
ORF1ab/nsp1277F77FttCttT11B.1.1.370.000193
ORF1ab/nsp1277F77FttCttT11B.1.1.5180.006329
ORF1ab/nsp1277F77FttCttT11B.1.1.5210.005348
ORF1ab/nsp1277F77ITtcAtc11B.1.1.70.000001
ORF1ab/nsp1277F77StTctCc11B.1.1.830.00271
ORF1ab/nsp1277F77LTtcCtc11B.1.1600.000031
ORF1ab/nsp1277F77FttCttT11B.1.160.160.000929
ORF1ab/nsp1277F77FttCttT11B.1.160.260.002421
ORF1ab/nsp1277F77FttCttT11B.1.160.310.008065
ORF1ab/nsp1277F77delTTC---11B.1.1610.017241
ORF1ab/nsp1277F77StTctCc11B.1.1770.000013
ORF1ab/nsp1277F77FttCttT11B.1.177.270.009434
ORF1ab/nsp1277F77FttCttT11B.1.177.310.011494
ORF1ab/nsp1277F77FttCttT11B.1.177.430.001477
ORF1ab/nsp1277F77FttCttT11B.1.177.440.000519
ORF1ab/nsp1277F77FttCttT11B.1.177.60.000977
ORF1ab/nsp1277F77FttCttT11B.1.177.750.001041
ORF1ab/nsp1277F77StTctCc11B.1.20.000009
ORF1ab/nsp1277F77LttCttA11B.1.2210.000071
ORF1ab/nsp1277F77YtTctAc11B.1.2210.000071
ORF1ab/nsp1277F77XtTCtAA11B.1.2210.000071
ORF1ab/nsp1277F77StTctCc11B.1.2340.000132
ORF1ab/nsp1277F77VTtcGtc11B.1.2400.000216
ORF1ab/nsp1277F77YtTctAc11B.1.2400.000216
ORF1ab/nsp1277F77FttCttT11B.1.258.170.000104
ORF1ab/nsp1277F77LttCttA11B.1.3320.003497
ORF1ab/nsp1277F77YtTctAc11B.1.3510.00003
ORF1ab/nsp1277F77LttCttA11B.1.3510.00003
ORF1ab/nsp1277F77CtTctGc11B.1.36.380.001642
ORF1ab/nsp1277F77delTTC---11B.1.4150.014286
ORF1ab/nsp1277F77FttCttT11B.1.4200.010417
ORF1ab/nsp1277F77VTtcGtc11B.1.4240.008065
ORF1ab/nsp1277F77LTtcCtc11B.1.4290.000024
ORF1ab/nsp1277F77VTtcGtc11B.1.4990.00105
ORF1ab/nsp1277F77FttCttT11B.1.5170.000427
ORF1ab/nsp1277F77CtTctGc11B.1.617.20.000004
ORF1ab/nsp1277F77delTTC---11B.1.617.20.000004
ORF1ab/nsp1277F77del2tTCt--11B.1.617.20.000004
ORF1ab/nsp1277F77delTTC---11B.1.6300.005236
ORF1ab/nsp1277F77StTctCc11B.1.6370.000073
ORF1ab/nsp1277F77FttCttT11B.400.000364
ORF1ab/nsp1277F77LttCttA11B.6.30.026316
ORF1ab/nsp1277F77delTTC---11C.170.055556
ORF1ab/nsp1277F77FttCttT11P.10.000016
ORF1ab/nsp1277F77FttCttT11Q.80.000165
ORF1ab/nsp1277F77FttCttT11R.10.00009