CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 764 | V764V | V5156V | syn | gtG | gtT | 1600 | 1388 | 0.8675 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764V | V5156V | syn | gtG | gtA | 1600 | 211 | 0.131875 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764V | V5156V | syn | gtG | gtC | 1600 | 1 | 0.000625 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764L | V5156L | nonsyn | Gtg | Ttg | 25 | 17 | 0.68 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764L | V5156L | nonsyn | Gtg | Ctg | 25 | 8 | 0.32 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764del | V5156del | del | GTG | --- | 17 | 17 | 1 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764del1 | V5156del1 | del | Gtg | -tg | 7 | 6 | 0.857143 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764G | V5156G | nonsyn | gTg | gGg | 7 | 6 | 0.857143 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764G | V5156G | nonsyn | gTG | gGT | 7 | 1 | 0.142857 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764del1 | V5156del1 | del | gTg | g-g | 7 | 1 | 0.142857 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764A | V5156A | nonsyn | gTg | gCg | 6 | 4 | 0.666667 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764F | V5156F | nonsyn | GtG | TtC | 6 | 3 | 0.5 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764F | V5156F | nonsyn | GtG | TtT | 6 | 3 | 0.5 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764A | V5156A | nonsyn | gTG | gCT | 6 | 2 | 0.333333 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764M | V5156M | nonsyn | Gtg | Atg | 3 | 3 | 1 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764C | V5156C | nonsyn | GTG | TGT | 1 | 1 | 1 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764W | V5156W | nonsyn | GTg | TGg | 1 | 1 | 1 | 15730-15732 |
ORF1ab/nsp12 | 764 | V764E | V5156E | nonsyn | gTg | gAg | 1 | 1 | 1 | 15730-15732 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1388 | 1600 | All | 0.000265 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 211 | 1600 | All | 0.00004 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtC | 1 | 1600 | All | 0 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 444 | 470 | B.1.617.2 | 0.001672 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 26 | 470 | B.1.617.2 | 0.000098 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 131 | 141 | B.1.1.7 | 0.000117 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 10 | 141 | B.1.1.7 | 0.000009 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 127 | 127 | B.1.415.1 | 0.962121 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 66 | 125 | AY.4 | 0.000103 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 59 | 125 | AY.4 | 0.000092 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 81 | 81 | AY.117 | 0.006846 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 66 | 66 | B.1.415 | 0.942857 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 56 | 59 | B.1.2 | 0.000493 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 3 | 59 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 57 | 57 | B.1.177.60 | 0.012451 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 26 | 43 | AY.43 | 0.000115 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 17 | 43 | AY.43 | 0.000075 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 33 | 35 | AY.103 | 0.000205 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 35 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 34 | 34 | B.1.221 | 0.002415 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 28 | 28 | B.1.177.16 | 0.018605 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 17 | 25 | All | 0.000003 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ctg | 8 | 25 | All | 0.000002 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 22 | 24 | B.1 | 0.000202 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 24 | B.1 | 0.000009 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtC | 1 | 24 | B.1 | 0.000009 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 18 | 18 | AY.29 | 0.000284 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 17 | 17 | All | 0.000003 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 7 | 14 | AY.25 | 0.000042 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 7 | 14 | AY.25 | 0.000042 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 13 | 13 | B.1.565 | 0.010535 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 9 | 12 | AY.44 | 0.000055 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 3 | 12 | AY.44 | 0.000018 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 8 | 12 | B.1.177 | 0.000105 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 4 | 12 | B.1.177 | 0.000053 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 10 | 11 | AY.39 | 0.000247 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 11 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 11 | 11 | B.1.177.82 | 0.005251 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 9 | 9 | AY.62 | 0.003922 |
ORF1ab/nsp12 | 764 | V764del1 | Gtg | -tg | 6 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 764 | V764G | gTg | gGg | 6 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 764 | V764G | gTG | gGT | 1 | 7 | All | 0 |
ORF1ab/nsp12 | 764 | V764del1 | gTg | g-g | 1 | 7 | All | 0 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp12 | 764 | V764A | gTg | gCg | 4 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 764 | V764F | GtG | TtT | 3 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 764 | V764F | GtG | TtC | 3 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 764 | V764A | gTG | gCT | 2 | 6 | All | 0 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 6 | 6 | AY.16.1 | 0.00282 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 6 | 6 | AY.5.4 | 0.00166 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 5 | 6 | B.1.1 | 0.000091 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 5 | 5 | 0.277778 | |
ORF1ab/nsp12 | 764 | V764F | GtG | TtT | 3 | 5 | 0.166667 | |
ORF1ab/nsp12 | 764 | V764F | GtG | TtC | 2 | 5 | 0.111111 | |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 5 | 5 | AY.19 | 0.005701 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 5 | 5 | B.1.229 | 0.048544 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 2 | 4 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 4 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 4 | 4 | AY.40 | 0.003857 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 3 | 3 | 0.166667 | |
ORF1ab/nsp12 | 764 | V764M | Gtg | Atg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp12 | 764 | V764A | gTG | gCT | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 764 | V764G | gTg | gGg | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 764 | V764G | gTG | gGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 764 | V764M | Gtg | Atg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ctg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 764 | V764A | gTg | gCg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 764 | V764G | gTg | gGg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ctg | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | B.1.195 | 0.01005 |
ORF1ab/nsp12 | 764 | V764del1 | Gtg | -tg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ctg | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp12 | 764 | V764del1 | gTg | g-g | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 764 | V764del1 | Gtg | -tg | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 2 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 2 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 764 | V764C | GTG | TGT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 764 | V764W | GTg | TGg | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 764 | V764W | GTg | TGg | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 764 | V764C | GTG | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 764 | V764E | gTg | gAg | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ctg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 764 | V764del1 | Gtg | -tg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 764 | V764G | gTg | gGg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ctg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 764 | V764A | gTg | gCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 764 | V764del1 | Gtg | -tg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 764 | V764G | gTg | gGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 764 | V764F | GtG | TtC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ctg | 1 | 1 | B.1.14 | 0.017544 |
ORF1ab/nsp12 | 764 | V764G | gTg | gGg | 1 | 1 | B.1.162 | 0.005025 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp12 | 764 | V764M | Gtg | Atg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.227 | 0.047619 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ctg | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 764 | V764A | gTg | gCg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 764 | V764L | Gtg | Ttg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 764 | V764E | gTg | gAg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 764 | V764V | gtG | gtT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 764 | V764del | GTG | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 764 | V764del1 | Gtg | -tg | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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