CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 760 | D760D | D5152D | syn | gaC | gaT | 74759 | 74759 | 1 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760Y | D5152Y | nonsyn | Gac | Tac | 20 | 20 | 1 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760del | D5152del | del | GAC | --- | 13 | 13 | 1 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760V | D5152V | nonsyn | gAc | gTc | 9 | 4 | 0.444444 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760V | D5152V | nonsyn | gAC | gTT | 9 | 3 | 0.333333 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760V | D5152V | nonsyn | gAC | gTA | 9 | 2 | 0.222222 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760E | D5152E | nonsyn | gaC | gaA | 8 | 7 | 0.875 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760E | D5152E | nonsyn | gaC | gaG | 8 | 1 | 0.125 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760X | D5152X | nonsyn | GaC | TaA | 4 | 4 | 1 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760L | D5152L | nonsyn | GAC | TTA | 2 | 2 | 1 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760F | D5152F | nonsyn | GAc | TTc | 2 | 2 | 1 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760G | D5152G | nonsyn | gAc | gGc | 2 | 2 | 1 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760Q | D5152Q | nonsyn | GaC | CaG | 2 | 2 | 1 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760del1 | D5152del1 | del | gaC | ga- | 2 | 2 | 1 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760H | D5152H | nonsyn | Gac | Cac | 1 | 1 | 1 | 15718-15720 |
ORF1ab/nsp12 | 760 | D760N | D5152N | nonsyn | Gac | Aac | 1 | 1 | 1 | 15718-15720 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 74759 | 74759 | All | 0.014299 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 41161 | 41161 | B.1.1.7 | 0.036848 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7718 | 7718 | AY.3 | 0.076766 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5758 | 5758 | AY.4.2.1 | 0.857867 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3807 | 3807 | AY.4.2 | 0.082569 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3165 | 3165 | B.1.526 | 0.074392 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1926 | 1926 | B.1.221 | 0.136809 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 943 | 943 | B.1.617.2 | 0.003551 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 882 | 882 | B.1.1.70 | 0.300819 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 824 | 824 | Q.8 | 0.135884 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 650 | 650 | AY.4 | 0.001012 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 581 | 581 | B.1.1.284 | 0.062399 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 468 | 468 | AY.43 | 0.002073 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 456 | 456 | AY.47 | 0.014184 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 430 | 430 | B.1.36.27 | 0.328244 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 365 | 365 | B.1 | 0.003343 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 359 | 359 | AY.44 | 0.002185 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 290 | 290 | B.1.2 | 0.002554 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 223 | 223 | AY.103 | 0.001385 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 219 | 219 | B.1.1 | 0.003973 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 212 | 212 | B.1.1.519 | 0.008419 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 188 | 188 | AY.61 | 0.019698 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 182 | 182 | AY.25 | 0.001095 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 149 | 149 | AY.5 | 0.003077 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 137 | 137 | AY.26 | 0.003878 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 135 | 135 | B.1.177 | 0.001778 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 125 | 125 | B.1.427 | 0.006312 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 116 | 116 | AY.39.1 | 0.004595 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 116 | 116 | P.1 | 0.001827 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 114 | 114 | B.1.243 | 0.007933 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 112 | 112 | AY.102 | 0.00297 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 89 | 89 | B.1.177.21 | 0.006806 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 76 | 76 | AY.9.2 | 0.002791 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 75 | 75 | B.1.36 | 0.010943 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 73 | 73 | B.1.429 | 0.001718 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 70 | 70 | AY.119 | 0.002472 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 67 | 67 | AY.39 | 0.001656 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 66 | 66 | B.1.1.329 | 0.253846 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 57 | 57 | B.1.177.82 | 0.027208 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 57 | 57 | B.1.258 | 0.003793 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 54 | 54 | B.1.523 | 0.132353 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 52 | 52 | B.1.160 | 0.001622 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 44 | 44 | C.37 | 0.005107 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 43 | 43 | AY.117 | 0.003634 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 43 | 43 | AY.20 | 0.001671 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 39 | 39 | B.1.351 | 0.001159 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 39 | 39 | B.1.416.1 | 0.060937 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 37 | 37 | P.1.7 | 0.011814 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 34 | 34 | AY.14 | 0.002992 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 33 | 33 | AY.29 | 0.000521 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 32 | 32 | AY.75.1 | 0.00577 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 32 | 32 | B.1.160.29 | 0.135021 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 32 | 32 | P.1.15 | 0.007435 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 29 | 29 | B.1.284 | 0.381579 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 29 | 29 | Q.4 | 0.013188 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 28 | 28 | AY.42 | 0.001126 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 28 | 28 | B.1.425 | 0.083832 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 27 | 27 | B | 0.003451 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 27 | 27 | B.1.160.19 | 0.964286 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 27 | 27 | B.1.637 | 0.001973 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 25 | 25 | B.1.527 | 0.092593 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 25 | 25 | P.1.10 | 0.006737 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 24 | 24 | AY.46.6 | 0.001733 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 23 | 23 | B.1.517 | 0.009821 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 22 | 22 | AY.59 | 0.011653 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 22 | 22 | B.1.1.409 | 0.062323 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 22 | 22 | B.1.177.44 | 0.011417 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 22 | 22 | B.1.311 | 0.006041 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 21 | 21 | AY.110 | 0.002366 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 21 | 21 | AY.74 | 0.002429 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 21 | 21 | B.1.1.432 | 0.026582 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 21 | 21 | B.1.551 | 0.027097 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 20 | 20 | All | 0.000004 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 20 | 20 | B.1.574 | 0.043011 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 20 | 20 | P.1.14 | 0.000956 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 19 | 19 | AY.118 | 0.00119 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 19 | 19 | AY.45 | 0.002312 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 18 | 18 | AY.46 | 0.001873 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 18 | 18 | B.1.391 | 0.020293 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 17 | 17 | AY.100 | 0.000782 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 17 | 17 | AY.120 | 0.000632 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 17 | 17 | AY.36 | 0.00252 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 17 | 17 | AY.46.4 | 0.002797 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 17 | 17 | B.1.525 | 0.001924 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 17 | 17 | B.1.596 | 0.001481 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 17 | 17 | B.1.621 | 0.001505 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 16 | 16 | AY.6 | 0.000658 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 15 | 15 | AY.98.1 | 0.000726 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 15 | 15 | B.1.36.17 | 0.007411 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 15 | 15 | B.1.570 | 0.044118 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 14 | 14 | AY.111 | 0.002564 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 14 | 14 | AY.23 | 0.000976 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 14 | 14 | AY.33 | 0.000935 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 14 | 14 | B.1.1.33 | 0.005892 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 14 | 14 | P.2 | 0.002613 |
ORF1ab/nsp12 | 760 | D760del | GAC | --- | 13 | 13 | All | 0.000002 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 13 | 13 | AY.3.1 | 0.001108 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 13 | 13 | AY.73 | 0.008649 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 13 | 13 | B.1.1.28 | 0.004046 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 13 | 13 | B.1.438.2 | 0.25 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 12 | 12 | AY.121 | 0.001624 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 12 | 12 | AY.29.1 | 0.002646 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 12 | 12 | B.1.1.317 | 0.00494 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 12 | 12 | B.1.177.89 | 0.292683 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 12 | 12 | D.2 | 0.0009 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 12 | 12 | P.1.12 | 0.005808 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 11 | 11 | AY.120.1 | 0.003531 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 11 | 11 | AY.92 | 0.00316 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 11 | 11 | B.1.241 | 0.008929 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 11 | 11 | B.1.351.3 | 0.009641 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 10 | 10 | B.1.232 | 0.005373 |
ORF1ab/nsp12 | 760 | D760V | gAc | gTc | 4 | 9 | All | 0.000001 |
ORF1ab/nsp12 | 760 | D760V | gAC | gTT | 3 | 9 | All | 0.000001 |
ORF1ab/nsp12 | 760 | D760V | gAC | gTA | 2 | 9 | All | 0 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 9 | 9 | AY.86 | 0.007469 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 9 | 9 | B.1.1.189 | 0.013616 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 9 | 9 | B.1.1.350 | 0.36 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 9 | 9 | B.1.539 | 0.157895 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 9 | 9 | Q.3 | 0.001305 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 9 | 9 | R.1 | 0.00081 |
ORF1ab/nsp12 | 760 | D760V | gAc | gTc | 4 | 8 | 0.222222 | |
ORF1ab/nsp12 | 760 | D760V | gAC | gTA | 2 | 8 | 0.111111 | |
ORF1ab/nsp12 | 760 | D760V | gAC | gTT | 2 | 8 | 0.111111 | |
ORF1ab/nsp12 | 760 | D760E | gaC | gaA | 7 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 760 | D760E | gaC | gaG | 1 | 8 | All | 0 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 8 | 8 | AY.55 | 0.007339 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 8 | 8 | AY.9 | 0.000541 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 8 | 8 | B.1.1.135 | 0.037559 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 8 | 8 | B.1.36.29 | 0.004139 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 8 | 8 | B.1.396 | 0.005646 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | AY.105 | 0.004502 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | AY.16.1 | 0.003289 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | B.1.1.222 | 0.001428 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | B.1.177.12 | 0.001062 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | B.1.399 | 0.01354 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | B.1.576 | 0.006346 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | B.1.609 | 0.003356 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 7 | 7 | N.4 | 0.029787 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | A.28 | 0.015873 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | AY.16 | 0.002278 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | AY.46.5 | 0.00119 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | AY.52 | 0.004886 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | AY.62 | 0.002614 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | AY.9.2.1 | 0.011858 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | B.1.1.176 | 0.002636 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | B.1.110.3 | 0.00431 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | B.1.177.60 | 0.001311 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | B.1.192 | 0.055556 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | B.1.274 | 0.071429 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 6 | 6 | B.1.36.18 | 0.002521 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | AY.104 | 0.009921 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | AY.34.1 | 0.00255 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | AZ.2 | 0.004105 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.1.312 | 0.00956 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.1.416 | 0.004525 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.160.15 | 0.024752 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.177.65 | 0.003327 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.177.77 | 0.003631 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.210 | 0.010661 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.23 | 0.030303 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.1.36.31 | 0.008757 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | B.4.6 | 0.083333 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | C.1 | 0.011962 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | C.36.3 | 0.002836 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | P.1.2 | 0.00578 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 5 | 5 | P.6 | 0.015723 |
ORF1ab/nsp12 | 760 | D760E | gaC | gaA | 4 | 4 | 0.222222 | |
ORF1ab/nsp12 | 760 | D760X | GaC | TaA | 4 | 4 | 0.222222 | |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 4 | 4 | 0.222222 | |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp12 | 760 | D760X | GaC | TaA | 4 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.109 | 0.002959 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.19 | 0.004561 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.37 | 0.001264 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.4.4 | 0.001637 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.40 | 0.003857 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.48 | 0.00186 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.67 | 0.001857 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.77 | 0.00451 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.87 | 0.003331 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | AY.99 | 0.004197 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp12 | 760 | D760del | GAC | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | B.1.581 | 0.037736 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AY.115 | 0.015625 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AY.21 | 0.005693 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AY.7.2 | 0.001678 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.1.342 | 0.1875 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.1.413 | 0.02069 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.1.507 | 0.026087 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.1.528 | 0.014423 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.157 | 0.008955 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.618 | 0.012097 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | B.1.626 | 0.017143 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | N.6 | 0.021277 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | P.1.13 | 0.002695 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp12 | 760 | D760L | GAC | TTA | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 760 | D760F | GAc | TTc | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 760 | D760Q | GaC | CaG | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 760 | D760Q | GaC | CaG | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 760 | D760G | gAc | gGc | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 760 | D760F | GAc | TTc | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 760 | D760del1 | gaC | ga- | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 760 | D760L | GAC | TTA | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp12 | 760 | D760del1 | gaC | ga- | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp12 | 760 | D760del | GAC | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.1.182 | 0.181818 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.1.219 | 0.01 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.1.244 | 0.030769 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.118 | 0.013423 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.333 | 0.021053 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.589 | 0.015152 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | C.38 | 0.016129 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp12 | 760 | D760N | Gac | Aac | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 760 | D760H | Gac | Cac | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 760 | D760H | Gac | Cac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp12 | 760 | D760del | GAC | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 760 | D760del | GAC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 760 | D760del | GAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 760 | D760N | Gac | Aac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 760 | D760del | GAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 760 | D760V | gAC | gTT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.262 | 0.015152 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.513 | 0.012346 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 760 | D760del | GAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.1.82 | 0.038462 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.127 | 0.002198 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.34 | 0.052632 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.38 | 0.010417 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 760 | D760E | gaC | gaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp12 | 760 | D760E | gaC | gaA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp12 | 760 | D760G | gAc | gGc | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp12 | 760 | D760E | gaC | gaG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.421 | 0.007463 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp12 | 760 | D760E | gaC | gaA | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.595.3 | 0.026316 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.56 | 0.028571 |
ORF1ab/nsp12 | 760 | D760G | gAc | gGc | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp12 | 760 | D760del | GAC | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp12 | 760 | D760Y | Gac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp12 | 760 | D760del | GAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | Q.5 | 0.016949 |
ORF1ab/nsp12 | 760 | D760D | gaC | gaT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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