CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 76 | T76I | T4468I | nonsyn | aCt | aTt | 2863 | 2862 | 0.999651 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76I | T4468I | nonsyn | aCT | aTC | 2863 | 1 | 0.000349284 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76A | T4468A | nonsyn | Act | Gct | 1983 | 1983 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76T | T4468T | syn | acT | acC | 506 | 420 | 0.83004 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76T | T4468T | syn | acT | acG | 506 | 74 | 0.146245 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76T | T4468T | syn | acT | acA | 506 | 12 | 0.0237154 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76N | T4468N | nonsyn | aCt | aAt | 182 | 182 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76del | T4468del | del | ACT | --- | 20 | 20 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76S | T4468S | nonsyn | Act | Tct | 19 | 14 | 0.736842 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76S | T4468S | nonsyn | aCt | aGt | 19 | 3 | 0.157895 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76S | T4468S | nonsyn | AcT | TcA | 19 | 1 | 0.0526316 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76S | T4468S | nonsyn | AcT | TcG | 19 | 1 | 0.0526316 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76del1 | T4468del1 | del | Act | -ct | 6 | 3 | 0.5 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76del1 | T4468del1 | del | acT | ac- | 6 | 3 | 0.5 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76P | T4468P | nonsyn | Act | Cct | 4 | 4 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76V | T4468V | nonsyn | ACt | GTt | 3 | 2 | 0.666667 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76V | T4468V | nonsyn | ACT | GTG | 3 | 1 | 0.333333 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76F | T4468F | nonsyn | ACt | TTt | 2 | 2 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76Y | T4468Y | nonsyn | ACt | TAt | 2 | 2 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76L | T4468L | nonsyn | ACt | CTt | 2 | 1 | 0.5 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76L | T4468L | nonsyn | ACT | TTG | 2 | 1 | 0.5 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76D | T4468D | nonsyn | ACt | GAt | 1 | 1 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76H | T4468H | nonsyn | ACt | CAt | 1 | 1 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76K | T4468K | nonsyn | aCT | aAA | 1 | 1 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76X | T4468X | nonsyn | ACT | TAA | 1 | 1 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76M | T4468M | nonsyn | aCT | aTG | 1 | 1 | 1 | 13666-13668 |
ORF1ab/nsp12 | 76 | T76del2 | T4468del2 | del | aCT | a-- | 1 | 1 | 1 | 13666-13668 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2862 | 2863 | All | 0.000547 |
ORF1ab/nsp12 | 76 | T76I | aCT | aTC | 1 | 2863 | All | 0 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 1983 | 1983 | All | 0.000379 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 1954 | 1954 | AY.75.1 | 0.352326 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1335 | 1335 | B.1.1 | 0.024218 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 420 | 506 | All | 0.00008 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 74 | 506 | All | 0.000014 |
ORF1ab/nsp12 | 76 | T76T | acT | acA | 12 | 506 | All | 0.000002 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 328 | 328 | AY.4 | 0.000511 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 238 | 238 | B.1.289 | 0.632979 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 182 | 182 | All | 0.000035 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 172 | 174 | AY.4 | 0.000268 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 2 | 174 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 98 | 98 | B.1.1.7 | 0.000088 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 76 | 97 | B.1.1.7 | 0.000068 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 19 | 97 | B.1.1.7 | 0.000017 |
ORF1ab/nsp12 | 76 | T76T | acT | acA | 2 | 97 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 90 | 90 | B.1 | 0.000824 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 83 | 83 | B.1.1.7 | 0.000074 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 49 | 49 | AY.25 | 0.000295 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 45 | 45 | B.1.2 | 0.000396 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 36 | 36 | B.1.617.2 | 0.000136 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 33 | 33 | AY.4.2 | 0.000716 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 31 | 31 | B.1.426 | 0.031282 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 19 | 28 | AY.25 | 0.000114 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 9 | 28 | AY.25 | 0.000054 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 23 | 23 | AY.39.1 | 0.000911 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 23 | 23 | AY.74 | 0.00266 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 23 | 23 | AY.8 | 0.013939 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 22 | 22 | AY.119 | 0.000777 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 22 | 22 | AY.7.1 | 0.002479 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 20 | 20 | All | 0.000004 |
ORF1ab/nsp12 | 76 | T76S | Act | Tct | 14 | 19 | All | 0.000003 |
ORF1ab/nsp12 | 76 | T76S | aCt | aGt | 3 | 19 | All | 0.000001 |
ORF1ab/nsp12 | 76 | T76S | AcT | TcA | 1 | 19 | All | 0 |
ORF1ab/nsp12 | 76 | T76S | AcT | TcG | 1 | 19 | All | 0 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 18 | 18 | B.1.1.241 | 0.037267 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 15 | 16 | B.1.221 | 0.001065 |
ORF1ab/nsp12 | 76 | T76I | aCT | aTC | 1 | 16 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 14 | 15 | P.1 | 0.000221 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 15 | P.1 | 0.000016 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 14 | 14 | B.1.1.47 | 0.074866 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 7 | 13 | B.1 | 0.000064 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 4 | 13 | B.1 | 0.000037 |
ORF1ab/nsp12 | 76 | T76T | acT | acA | 2 | 13 | B.1 | 0.000018 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 12 | 12 | AY.98.1 | 0.000581 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 12 | 12 | B.1.1.434 | 0.004183 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 11 | 11 | AY.54 | 0.001049 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 11 | 11 | B.1.235 | 0.027708 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 6 | 10 | AY.103 | 0.000037 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 4 | 10 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 10 | 10 | AY.88 | 0.008842 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 10 | 10 | B.1.1.305 | 0.03861 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 10 | 10 | B.1.214.2 | 0.005995 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 10 | 10 | B.1.378 | 0.068493 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 9 | 10 | B.1.617.2 | 0.000034 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 10 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 9 | 9 | A.23.1 | 0.006338 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp12 | 76 | T76S | Act | Tct | 6 | 9 | B.1 | 0.000055 |
ORF1ab/nsp12 | 76 | T76S | aCt | aGt | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76S | AcT | TcG | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76S | AcT | TcA | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 7 | 8 | AY.5 | 0.000145 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 8 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 8 | 8 | B.1.177.48 | 0.025 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 4 | 7 | AY.44 | 0.000024 |
ORF1ab/nsp12 | 76 | T76T | acT | acA | 2 | 7 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 7 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 7 | 7 | B | 0.000895 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 7 | 7 | B.1.1.241 | 0.014493 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 7 | 7 | C.36.1 | 0.029046 |
ORF1ab/nsp12 | 76 | T76del1 | acT | ac- | 3 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 76 | T76del1 | Act | -ct | 3 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 4 | 6 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 76 | T76T | acT | acA | 2 | 6 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 6 | 6 | B.1.422 | 0.004874 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 5 | 5 | AY.29.1 | 0.001103 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 4 | 5 | AY.3 | 0.00004 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 5 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 5 | 5 | B.1.1.409 | 0.014164 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 5 | 5 | B.1.177.7 | 0.000824 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp12 | 76 | T76P | Act | Cct | 4 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 4 | 4 | AY.63 | 0.001547 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp12 | 76 | T76S | Act | Tct | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp12 | 76 | T76V | ACt | GTt | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 76 | T76V | ACT | GTG | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 2 | 3 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 76 | T76T | acT | acA | 1 | 3 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 2 | 3 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 3 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 3 | 3 | B.1.416 | 0.003807 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 3 | 3 | B.1.611 | 0.12 |
ORF1ab/nsp12 | 76 | T76F | ACt | TTt | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 76 | T76Y | ACt | TAt | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 76 | T76L | ACT | TTG | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 76 | T76L | ACt | CTt | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp12 | 76 | T76Y | ACt | TAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 76 | T76P | Act | Cct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 76 | T76F | ACt | TTt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 76 | T76L | ACT | TTG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76L | ACt | CTt | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 2 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | B.32 | 0.054054 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AG.1 | 0.066667 |
ORF1ab/nsp12 | 76 | T76H | ACt | CAt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 76 | T76del2 | aCT | a-- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 76 | T76X | ACT | TAA | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 76 | T76M | aCT | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 76 | T76K | aCT | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 76 | T76D | ACt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 76 | T76del1 | Act | -ct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 76 | T76T | acT | acA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 76 | T76del1 | acT | ac- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 76 | T76V | ACt | GTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 76 | T76T | acT | acA | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 76 | T76S | aCt | aGt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 76 | T76X | ACT | TAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76M | aCT | aTG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76K | aCT | aAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76H | ACt | CAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76del1 | acT | ac- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76V | ACT | GTG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 76 | T76S | Act | Tct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp12 | 76 | T76S | aCt | aGt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp12 | 76 | T76V | ACt | GTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 76 | T76D | ACt | GAt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 76 | T76S | Act | Tct | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp12 | 76 | T76del2 | aCT | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.166 | 0.008475 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 76 | T76del1 | Act | -ct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 76 | T76del1 | acT | ac- | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.224 | 0.025 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp12 | 76 | T76P | Act | Cct | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 76 | T76del1 | Act | -ct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 76 | T76A | Act | Gct | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp12 | 76 | T76P | Act | Cct | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.555 | 0.022222 |
ORF1ab/nsp12 | 76 | T76T | acT | acA | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp12 | 76 | T76S | Act | Tct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.598 | 0.016949 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 76 | T76S | Act | Tct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp12 | 76 | T76T | acT | acG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp12 | 76 | T76del | ACT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | C.2.1 | 0.006667 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 76 | T76T | acT | acC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 76 | T76N | aCt | aAt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp12 | 76 | T76I | aCt | aTt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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