CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 75 | H75H | H4467H | syn | caC | caT | 15427 | 15427 | 1 | 13663-13665 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 15427 | 15427 | All | 0.002951 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 6089 | 6089 | B.1.1.7 | 0.005451 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1633 | 1633 | AY.4 | 0.002542 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1324 | 1324 | AY.10 | 0.701643 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 490 | 490 | B.1.617.2 | 0.001845 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 288 | 288 | AY.43 | 0.001276 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 265 | 265 | AY.3 | 0.002636 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 264 | 264 | B.1.2 | 0.002325 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 251 | 251 | B.1.177.7 | 0.041378 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 229 | 229 | B.1.1.227 | 0.995652 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 227 | 227 | B.1.240 | 0.048933 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 215 | 215 | B.1.36.35 | 0.559896 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 193 | 193 | AY.25 | 0.001161 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 186 | 186 | B.1.1 | 0.003374 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 180 | 180 | B.1.526 | 0.004231 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 174 | 174 | AY.42 | 0.007 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 160 | 160 | AY.103 | 0.000993 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 145 | 145 | B.1.573 | 0.884146 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 139 | 139 | B.1.544 | 0.837349 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 138 | 138 | P.1 | 0.002174 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 135 | 135 | B.1.595.4 | 0.985401 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 116 | 116 | AY.44 | 0.000706 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 115 | 115 | B.1 | 0.001053 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 115 | 115 | B.1.177 | 0.001514 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 83 | 83 | AY.117 | 0.007015 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 82 | 82 | B.1.258.14 | 0.080392 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 80 | 80 | B.1.429 | 0.001882 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 73 | 73 | AY.102 | 0.001936 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 69 | 69 | AY.26 | 0.001953 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 69 | 69 | B.1.221 | 0.004901 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 64 | 64 | AY.39 | 0.001582 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 60 | 60 | B.1.160 | 0.001871 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 53 | 53 | B.1.258 | 0.003527 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 48 | 48 | B.1.630 | 0.251309 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 44 | 44 | AY.100 | 0.002024 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 44 | 44 | AY.5 | 0.000909 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 43 | 43 | B.1.243 | 0.002992 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 37 | 37 | AY.120 | 0.001376 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 37 | 37 | B.1.575 | 0.011226 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 35 | 35 | AY.20 | 0.00136 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 32 | 32 | AY.116.1 | 0.009966 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 32 | 32 | B.1.474 | 0.060837 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 28 | 28 | B.1.1.519 | 0.001112 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 28 | 28 | B.1.351 | 0.000832 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 27 | 27 | B.1.1.217 | 0.098182 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 27 | 27 | Q.1 | 0.003411 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 25 | 25 | AY.14 | 0.0022 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 23 | 23 | AY.119 | 0.000812 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 22 | 22 | AY.110 | 0.002479 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 22 | 22 | AY.29 | 0.000347 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 21 | 21 | AY.61 | 0.0022 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 21 | 21 | B.1.1.28 | 0.006536 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 20 | 20 | B.1.596 | 0.001743 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 19 | 19 | AY.34 | 0.001842 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 19 | 19 | B.1.177.35 | 0.013131 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 19 | 19 | B.1.36 | 0.002772 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 18 | 18 | AY.39.1 | 0.000713 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 18 | 18 | AY.4.2 | 0.00039 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 18 | 18 | B.1.195 | 0.090452 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 18 | 18 | B.1.427 | 0.000909 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 17 | 17 | AY.59 | 0.009004 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 17 | 17 | AY.74 | 0.001966 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 16 | 16 | B.1.409 | 0.0125 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 16 | 16 | C.37 | 0.001857 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 15 | 15 | AY.118 | 0.00094 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 15 | 15 | AY.45 | 0.001825 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 15 | 15 | AY.47 | 0.000467 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 15 | 15 | Q.8 | 0.002474 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 13 | 13 | AY.104 | 0.025794 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 13 | 13 | AY.79 | 0.015738 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 13 | 13 | AY.9.2 | 0.000477 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 13 | 13 | P.1.15 | 0.00302 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 12 | 12 | AY.116 | 0.003441 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 12 | 12 | B.1.214.3 | 0.085714 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 12 | 12 | B.1.416 | 0.015228 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 11 | 11 | AY.113 | 0.001566 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 11 | 11 | AY.9.1 | 0.000921 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 11 | 11 | AY.98 | 0.000869 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 11 | 11 | B.1.466.2 | 0.004304 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 10 | 10 | B.1.1.284 | 0.001074 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 10 | 10 | B.1.177.86 | 0.001835 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 10 | 10 | M.2 | 0.833333 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 9 | 9 | AY.9 | 0.000608 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 9 | 9 | B.1.1.33 | 0.003788 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 9 | 9 | B.1.1.70 | 0.00307 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 9 | 9 | B.1.36.18 | 0.003782 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 9 | 9 | P.1.2 | 0.010405 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | AY.30 | 0.003166 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | AY.54 | 0.000763 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | AY.68 | 0.00219 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | AY.88 | 0.007073 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | B.1.428 | 0.008163 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | B.1.561 | 0.003176 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | B.1.568 | 0.008889 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | B.1.595 | 0.002088 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | B.1.632 | 0.053691 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | AY.13 | 0.001127 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | AY.16.1 | 0.003289 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | AY.38 | 0.003495 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | B.1.160.29 | 0.029536 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | B.1.177.4 | 0.001477 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | B.1.177.81 | 0.001325 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | B.1.361 | 0.009021 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 7 | 7 | C.1 | 0.016746 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 6 | 6 | A.5 | 0.011538 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 6 | 6 | AY.40 | 0.005786 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 6 | 6 | B.1.1.269 | 0.008119 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 6 | 6 | B.1.375 | 0.004918 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 6 | 6 | B.1.400 | 0.002574 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 5 | 5 | AY.108 | 0.005513 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 5 | 5 | B | 0.000639 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 5 | 5 | B.1.177.32 | 0.006748 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 5 | 5 | B.1.232 | 0.002687 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 5 | 5 | B.1.294 | 0.16129 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | AY.24 | 0.001724 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | AY.89 | 0.019608 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | AY.97 | 0.006803 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | B.1.177.28 | 0.02963 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | B.1.405 | 0.049383 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.1.332 | 0.09375 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.1.385 | 0.013393 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.177.80 | 0.005736 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.326 | 0.022727 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | B.3 | 0.002492 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | C.23 | 0.017442 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AE.1 | 0.022727 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.1.411 | 0.029412 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.1.429 | 0.009217 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.1.487 | 0.011173 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.604 | 0.034483 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.507 | 0.011236 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.562 | 0.018519 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.4.6 | 0.016667 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | B.6.8 | 0.008264 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp12 | 75 | H75H | caC | caT | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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