CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 75

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1275H75HH4467HsyncaCcaT1542715427113663-13665
ORF1ab/nsp1275H75YH4467YnonsynCacTac5805790.99827613663-13665
ORF1ab/nsp1275H75YH4467YnonsynCaCTaT58010.0017241413663-13665
ORF1ab/nsp1275H75NH4467NnonsynCacAac105990.94285713663-13665
ORF1ab/nsp1275H75NH4467NnonsynCaCAaT10560.057142913663-13665
ORF1ab/nsp1275H75QH4467QnonsyncaCcaA27250.92592613663-13665
ORF1ab/nsp1275H75QH4467QnonsyncaCcaG2720.074074113663-13665
ORF1ab/nsp1275H75delH4467deldelCAC---1919113663-13665
ORF1ab/nsp1275H75LH4467LnonsyncAccTc1480.57142913663-13665
ORF1ab/nsp1275H75LH4467LnonsyncACcTA1430.21428613663-13665
ORF1ab/nsp1275H75LH4467LnonsyncACcTT1420.14285713663-13665
ORF1ab/nsp1275H75LH4467LnonsynCACTTA1410.071428613663-13665
ORF1ab/nsp1275H75RH4467RnonsyncAccGc1390.69230813663-13665
ORF1ab/nsp1275H75RH4467RnonsyncACcGT1320.15384613663-13665
ORF1ab/nsp1275H75RH4467RnonsyncACcGA1320.15384613663-13665
ORF1ab/nsp1275H75DH4467DnonsynCacGac1010113663-13665
ORF1ab/nsp1275H75PH4467PnonsyncAccCc860.7513663-13665
ORF1ab/nsp1275H75SH4467SnonsynCACAGT830.37513663-13665
ORF1ab/nsp1275H75SH4467SnonsynCAcAGc830.37513663-13665
ORF1ab/nsp1275H75PH4467PnonsyncACcCA820.2513663-13665
ORF1ab/nsp1275H75SH4467SnonsynCAcTCc810.12513663-13665
ORF1ab/nsp1275H75SH4467SnonsynCACTCA810.12513663-13665
ORF1ab/nsp1275H75del1H4467del1delCac-ac760.85714313663-13665
ORF1ab/nsp1275H75del1H4467del1delCAcT-c710.14285713663-13665
ORF1ab/nsp1275H75XH4467XnonsynCaCTaA540.813663-13665
ORF1ab/nsp1275H75IH4467InonsynCACATT520.413663-13665
ORF1ab/nsp1275H75IH4467InonsynCAcATc520.413663-13665
ORF1ab/nsp1275H75IH4467InonsynCACATA510.213663-13665
ORF1ab/nsp1275H75XH4467XnonsynCACTGA510.213663-13665
ORF1ab/nsp1275H75del2H4467del2delcACc--22113663-13665
ORF1ab/nsp1275H75EH4467EnonsynCaCGaA11113663-13665
ORF1ab/nsp1275H75KH4467KnonsynCaCAaA11113663-13665
ORF1ab/nsp1275H75CH4467CnonsynCAcTGc11113663-13665
ORF1ab/nsp1275H75FH4467FnonsynCAcTTc11113663-13665

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1275H75HcaCcaT1542715427All0.002951
ORF1ab/nsp1275H75HcaCcaT60896089B.1.1.70.005451
ORF1ab/nsp1275H75HcaCcaT16331633AY.40.002542
ORF1ab/nsp1275H75HcaCcaT13241324AY.100.701643
ORF1ab/nsp1275H75YCacTac579580All0.000111
ORF1ab/nsp1275H75YCaCTaT1580All0
ORF1ab/nsp1275H75HcaCcaT490490B.1.617.20.001845
ORF1ab/nsp1275H75HcaCcaT288288AY.430.001276
ORF1ab/nsp1275H75HcaCcaT265265AY.30.002636
ORF1ab/nsp1275H75HcaCcaT264264B.1.20.002325
ORF1ab/nsp1275H75HcaCcaT251251B.1.177.70.041378
ORF1ab/nsp1275H75HcaCcaT229229B.1.1.2270.995652
ORF1ab/nsp1275H75HcaCcaT227227B.1.2400.048933
ORF1ab/nsp1275H75HcaCcaT215215B.1.36.350.559896
ORF1ab/nsp1275H75HcaCcaT193193AY.250.001161
ORF1ab/nsp1275H75HcaCcaT186186B.1.10.003374
ORF1ab/nsp1275H75HcaCcaT180180B.1.5260.004231
ORF1ab/nsp1275H75HcaCcaT174174AY.420.007
ORF1ab/nsp1275H75HcaCcaT160160AY.1030.000993
ORF1ab/nsp1275H75HcaCcaT145145B.1.5730.884146
ORF1ab/nsp1275H75HcaCcaT139139B.1.5440.837349
ORF1ab/nsp1275H75HcaCcaT138138P.10.002174
ORF1ab/nsp1275H75HcaCcaT135135B.1.595.40.985401
ORF1ab/nsp1275H75YCacTac119119AY.40.000185
ORF1ab/nsp1275H75HcaCcaT116116AY.440.000706
ORF1ab/nsp1275H75HcaCcaT115115B.10.001053
ORF1ab/nsp1275H75HcaCcaT115115B.1.1770.001514
ORF1ab/nsp1275H75NCacAac99105All0.000019
ORF1ab/nsp1275H75NCaCAaT6105All0.000001
ORF1ab/nsp1275H75HcaCcaT8383AY.1170.007015
ORF1ab/nsp1275H75HcaCcaT8282B.1.258.140.080392
ORF1ab/nsp1275H75HcaCcaT8080B.1.4290.001882
ORF1ab/nsp1275H75HcaCcaT7373AY.1020.001936
ORF1ab/nsp1275H75HcaCcaT6969AY.260.001953
ORF1ab/nsp1275H75HcaCcaT6969B.1.2210.004901
ORF1ab/nsp1275H75HcaCcaT6464AY.390.001582
ORF1ab/nsp1275H75HcaCcaT6060B.1.1600.001871
ORF1ab/nsp1275H75YCacTac5959B.1.617.20.000222
ORF1ab/nsp1275H75HcaCcaT5353B.1.2580.003527
ORF1ab/nsp1275H75HcaCcaT4848B.1.6300.251309
ORF1ab/nsp1275H75YCacTac4545AY.430.000199
ORF1ab/nsp1275H75HcaCcaT4444AY.1000.002024
ORF1ab/nsp1275H75HcaCcaT4444AY.50.000909
ORF1ab/nsp1275H75HcaCcaT4343B.1.2430.002992
ORF1ab/nsp1275H75YCacTac4242AY.1030.000261
ORF1ab/nsp1275H75YCacTac3838B.1.4290.000894
ORF1ab/nsp1275H75HcaCcaT3737AY.1200.001376
ORF1ab/nsp1275H75HcaCcaT3737B.1.5750.011226
ORF1ab/nsp1275H75HcaCcaT3535AY.200.00136
ORF1ab/nsp1275H75HcaCcaT3232AY.116.10.009966
ORF1ab/nsp1275H75HcaCcaT3232B.1.4740.060837
ORF1ab/nsp1275H75HcaCcaT2828B.1.1.5190.001112
ORF1ab/nsp1275H75HcaCcaT2828B.1.3510.000832
ORF1ab/nsp1275H75QcaCcaA2527All0.000005
ORF1ab/nsp1275H75QcaCcaG227All0
ORF1ab/nsp1275H75HcaCcaT2727B.1.1.2170.098182
ORF1ab/nsp1275H75HcaCcaT2727Q.10.003411
ORF1ab/nsp1275H75YCacTac2626B.1.1.70.000023
ORF1ab/nsp1275H75HcaCcaT2525AY.140.0022
ORF1ab/nsp1275H75HcaCcaT2323AY.1190.000812
ORF1ab/nsp1275H75HcaCcaT2222AY.1100.002479
ORF1ab/nsp1275H75HcaCcaT2222AY.290.000347
ORF1ab/nsp1275H75HcaCcaT2121AY.610.0022
ORF1ab/nsp1275H75HcaCcaT2121B.1.1.280.006536
ORF1ab/nsp1275H75HcaCcaT2020B.1.5960.001743
ORF1ab/nsp1275H75delCAC---1919All0.000004
ORF1ab/nsp1275H75YCacTac1919AY.290.0003
ORF1ab/nsp1275H75HcaCcaT1919AY.340.001842
ORF1ab/nsp1275H75HcaCcaT1919B.1.177.350.013131
ORF1ab/nsp1275H75HcaCcaT1919B.1.360.002772
ORF1ab/nsp1275H75HcaCcaT1818AY.39.10.000713
ORF1ab/nsp1275H75HcaCcaT1818AY.4.20.00039
ORF1ab/nsp1275H75HcaCcaT1818B.1.1950.090452
ORF1ab/nsp1275H75HcaCcaT1818B.1.4270.000909
ORF1ab/nsp1275H75HcaCcaT1717AY.590.009004
ORF1ab/nsp1275H75HcaCcaT1717AY.740.001966
ORF1ab/nsp1275H75NCacAac1217B.10.00011
ORF1ab/nsp1275H75NCaCAaT517B.10.000046
ORF1ab/nsp1275H75YCacTac1616AY.440.000097
ORF1ab/nsp1275H75HcaCcaT1616B.1.4090.0125
ORF1ab/nsp1275H75HcaCcaT1616C.370.001857
ORF1ab/nsp1275H75HcaCcaT1515AY.1180.00094
ORF1ab/nsp1275H75HcaCcaT1515AY.450.001825
ORF1ab/nsp1275H75HcaCcaT1515AY.470.000467
ORF1ab/nsp1275H75HcaCcaT1515Q.80.002474
ORF1ab/nsp1275H75LcAccTc814All0.000002
ORF1ab/nsp1275H75LcACcTA314All0.000001
ORF1ab/nsp1275H75LcACcTT214All0
ORF1ab/nsp1275H75LCACTTA114All0
ORF1ab/nsp1275H75NCacAac1414AY.40.000022
ORF1ab/nsp1275H75NCacAac1414B.1.4290.000329
ORF1ab/nsp1275H75NCacAac1414B.1.6370.001023
ORF1ab/nsp1275H75RcAccGc913All0.000002
ORF1ab/nsp1275H75RcACcGA213All0
ORF1ab/nsp1275H75RcACcGT213All0
ORF1ab/nsp1275H75HcaCcaT1313AY.1040.025794
ORF1ab/nsp1275H75HcaCcaT1313AY.790.015738
ORF1ab/nsp1275H75HcaCcaT1313AY.9.20.000477
ORF1ab/nsp1275H75YCacTac1213B.10.00011
ORF1ab/nsp1275H75YCaCTaT113B.10.000009
ORF1ab/nsp1275H75HcaCcaT1313P.1.150.00302
ORF1ab/nsp1275H75HcaCcaT1212AY.1160.003441
ORF1ab/nsp1275H75HcaCcaT1212B.1.214.30.085714
ORF1ab/nsp1275H75HcaCcaT1212B.1.4160.015228
ORF1ab/nsp1275H75HcaCcaT1111AY.1130.001566
ORF1ab/nsp1275H75YCacTac1111AY.520.008958
ORF1ab/nsp1275H75HcaCcaT1111AY.9.10.000921
ORF1ab/nsp1275H75HcaCcaT1111AY.980.000869
ORF1ab/nsp1275H75HcaCcaT1111B.1.466.20.004304
ORF1ab/nsp1275H75DCacGac1010All0.000002
ORF1ab/nsp1275H75YCacTac1010AY.30.000099
ORF1ab/nsp1275H75HcaCcaT1010B.1.1.2140.000555
ORF1ab/nsp1275H75HcaCcaT1010B.1.1.2840.001074
ORF1ab/nsp1275H75HcaCcaT1010B.1.177.860.001835
ORF1ab/nsp1275H75HcaCcaT1010M.20.833333
ORF1ab/nsp1275H75HcaCcaT99AY.330.000601
ORF1ab/nsp1275H75HcaCcaT99AY.90.000608
ORF1ab/nsp1275H75LcAccTc49B.10.000037
ORF1ab/nsp1275H75LcACcTA29B.10.000018
ORF1ab/nsp1275H75LcACcTT29B.10.000018
ORF1ab/nsp1275H75LCACTTA19B.10.000009
ORF1ab/nsp1275H75HcaCcaT99B.1.1.330.003788
ORF1ab/nsp1275H75HcaCcaT99B.1.1.700.00307
ORF1ab/nsp1275H75YCacTac99B.1.1600.000281
ORF1ab/nsp1275H75HcaCcaT99B.1.36.180.003782
ORF1ab/nsp1275H75YCacTac99B.1.4270.000454
ORF1ab/nsp1275H75HcaCcaT99P.1.20.010405
ORF1ab/nsp1275H75PcAccCc68All0.000001
ORF1ab/nsp1275H75SCACAGT38All0.000001
ORF1ab/nsp1275H75SCAcAGc38All0.000001
ORF1ab/nsp1275H75PcACcCA28All0
ORF1ab/nsp1275H75SCAcTCc18All0
ORF1ab/nsp1275H75SCACTCA18All0
ORF1ab/nsp1275H75YCacTac88AY.250.000048
ORF1ab/nsp1275H75HcaCcaT88AY.300.003166
ORF1ab/nsp1275H75YCacTac88AY.4.20.000174
ORF1ab/nsp1275H75HcaCcaT88AY.540.000763
ORF1ab/nsp1275H75HcaCcaT88AY.680.00219
ORF1ab/nsp1275H75HcaCcaT88AY.880.007073
ORF1ab/nsp1275H75HcaCcaT88AY.98.10.000387
ORF1ab/nsp1275H75YCacTac88B.1.1770.000105
ORF1ab/nsp1275H75HcaCcaT88B.1.3110.002197
ORF1ab/nsp1275H75HcaCcaT88B.1.4280.008163
ORF1ab/nsp1275H75HcaCcaT88B.1.5250.000905
ORF1ab/nsp1275H75HcaCcaT88B.1.5610.003176
ORF1ab/nsp1275H75HcaCcaT88B.1.5680.008889
ORF1ab/nsp1275H75HcaCcaT88B.1.5950.002088
ORF1ab/nsp1275H75HcaCcaT88B.1.6320.053691
ORF1ab/nsp1275H75HcaCcaT88P.1.140.000382
ORF1ab/nsp1275H75del1Cac-ac67All0.000001
ORF1ab/nsp1275H75del1CAcT-c17All0
ORF1ab/nsp1275H75HcaCcaT77AY.130.001127
ORF1ab/nsp1275H75HcaCcaT77AY.16.10.003289
ORF1ab/nsp1275H75YCacTac77AY.200.000272
ORF1ab/nsp1275H75HcaCcaT77AY.230.000488
ORF1ab/nsp1275H75HcaCcaT77AY.380.003495
ORF1ab/nsp1275H75YCacTac77AY.390.000173
ORF1ab/nsp1275H75HcaCcaT77AY.46.60.000505
ORF1ab/nsp1275H75NCacAac77AY.50.000145
ORF1ab/nsp1275H75HcaCcaT77AY.60.000288
ORF1ab/nsp1275H75YCacTac77AY.750.000392
ORF1ab/nsp1275H75RcAccGc47B.10.000037
ORF1ab/nsp1275H75SCACAGT37B.10.000027
ORF1ab/nsp1275H75SCAcAGc27B.10.000018
ORF1ab/nsp1275H75RcACcGT27B.10.000018
ORF1ab/nsp1275H75RcACcGA17B.10.000009
ORF1ab/nsp1275H75SCAcTCc17B.10.000009
ORF1ab/nsp1275H75SCACTCA17B.10.000009
ORF1ab/nsp1275H75HcaCcaT77B.1.160.290.029536
ORF1ab/nsp1275H75HcaCcaT77B.1.177.40.001477
ORF1ab/nsp1275H75HcaCcaT77B.1.177.810.001325
ORF1ab/nsp1275H75HcaCcaT77B.1.36.290.003621
ORF1ab/nsp1275H75HcaCcaT77B.1.3610.009021
ORF1ab/nsp1275H75HcaCcaT77B.1.6210.00062
ORF1ab/nsp1275H75HcaCcaT77B.1.6370.000512
ORF1ab/nsp1275H75HcaCcaT77C.10.016746
ORF1ab/nsp1275H75HcaCcaT66A.50.011538
ORF1ab/nsp1275H75HcaCcaT66AY.3.10.000512
ORF1ab/nsp1275H75HcaCcaT66AY.400.005786
ORF1ab/nsp1275H75HcaCcaT66AY.99.20.000553
ORF1ab/nsp1275H75QcaCcaA66B.1.10.000109
ORF1ab/nsp1275H75HcaCcaT66B.1.1.2690.008119
ORF1ab/nsp1275H75NCacAac66B.1.1.70.000005
ORF1ab/nsp1275H75HcaCcaT66B.1.3750.004918
ORF1ab/nsp1275H75HcaCcaT66B.1.4000.002574
ORF1ab/nsp1275H75HcaCcaT66B.1.438.10.000644
ORF1ab/nsp1275H75HcaCcaT66R.10.00054
ORF1ab/nsp1275H75XCaCTaA45All0.000001
ORF1ab/nsp1275H75ICAcATc25All0
ORF1ab/nsp1275H75ICACATT25All0
ORF1ab/nsp1275H75ICACATA15All0
ORF1ab/nsp1275H75XCACTGA15All0
ORF1ab/nsp1275H75HcaCcaT55AY.1080.005513
ORF1ab/nsp1275H75HcaCcaT55AY.1210.000677
ORF1ab/nsp1275H75NCacAac55AY.30.00005
ORF1ab/nsp1275H75HcaCcaT55AY.460.00052
ORF1ab/nsp1275H75YCacTac55AY.470.000156
ORF1ab/nsp1275H75YCacTac55AY.9.20.000184
ORF1ab/nsp1275H75HcaCcaT55B0.000639
ORF1ab/nsp1275H75QcaCcaA45B.10.000037
ORF1ab/nsp1275H75ICACATT25B.10.000018
ORF1ab/nsp1275H75ICAcATc25B.10.000018
ORF1ab/nsp1275H75ICACATA15B.10.000009
ORF1ab/nsp1275H75QcaCcaG15B.10.000009
ORF1ab/nsp1275H75YCacTac55B.1.1.2220.00102
ORF1ab/nsp1275H75HcaCcaT55B.1.1.3170.002058
ORF1ab/nsp1275H75YCacTac55B.1.1.3170.002058
ORF1ab/nsp1275H75delCAC---55B.1.1.70.000004
ORF1ab/nsp1275H75HcaCcaT55B.1.177.320.006748
ORF1ab/nsp1275H75HcaCcaT55B.1.2320.002687
ORF1ab/nsp1275H75HcaCcaT55B.1.2340.00066
ORF1ab/nsp1275H75HcaCcaT55B.1.2940.16129
ORF1ab/nsp1275H75NCacAac55B.1.617.20.000019
ORF1ab/nsp1275H75YCacTac55B.1.6210.000443
ORF1ab/nsp1275H75HcaCcaT44A.2.50.001996
ORF1ab/nsp1275H75YCacTac44AY.1000.000184
ORF1ab/nsp1275H75HcaCcaT44AY.240.001724
ORF1ab/nsp1275H75HcaCcaT44AY.270.000259
ORF1ab/nsp1275H75YCacTac44AY.420.000161
ORF1ab/nsp1275H75HcaCcaT44AY.750.000224
ORF1ab/nsp1275H75HcaCcaT44AY.890.019608
ORF1ab/nsp1275H75HcaCcaT44AY.970.006803
ORF1ab/nsp1275H75XCaCTaA34B.10.000027
ORF1ab/nsp1275H75XCACTGA14B.10.000009
ORF1ab/nsp1275H75HcaCcaT44B.1.1.390.002039
ORF1ab/nsp1275H75QcaCcaA44B.1.1.70.000004
ORF1ab/nsp1275H75HcaCcaT44B.1.177.280.02963
ORF1ab/nsp1275H75YCacTac44B.1.20.000035
ORF1ab/nsp1275H75HcaCcaT44B.1.36.80.004
ORF1ab/nsp1275H75HcaCcaT44B.1.4050.049383
ORF1ab/nsp1275H75HcaCcaT44P.1.10.001271
ORF1ab/nsp1275H75HcaCcaT44P.1.120.001936
ORF1ab/nsp1275H75YCacTac33AY.1020.00008
ORF1ab/nsp1275H75NCacAac33AY.1020.00008
ORF1ab/nsp1275H75YCacTac33AY.120.000948
ORF1ab/nsp1275H75YCacTac33AY.340.000291
ORF1ab/nsp1275H75HcaCcaT33AY.4.50.000322
ORF1ab/nsp1275H75HcaCcaT33AY.480.001395
ORF1ab/nsp1275H75YCacTac33AY.50.000062
ORF1ab/nsp1275H75HcaCcaT33AY.620.001307
ORF1ab/nsp1275H75HcaCcaT33AY.640.001786
ORF1ab/nsp1275H75HcaCcaT33AY.710.001425
ORF1ab/nsp1275H75HcaCcaT33AY.840.001312
ORF1ab/nsp1275H75YCacTac33AY.940.001328
ORF1ab/nsp1275H75DCacGac33B.10.000027
ORF1ab/nsp1275H75HcaCcaT33B.1.1.2940.003797
ORF1ab/nsp1275H75HcaCcaT33B.1.1.3320.09375
ORF1ab/nsp1275H75HcaCcaT33B.1.1.3850.013393
ORF1ab/nsp1275H75HcaCcaT33B.1.1.4340.001046
ORF1ab/nsp1275H75HcaCcaT33B.1.177.120.000455
ORF1ab/nsp1275H75HcaCcaT33B.1.177.570.000843
ORF1ab/nsp1275H75HcaCcaT33B.1.177.800.005736
ORF1ab/nsp1275H75HcaCcaT33B.1.3260.022727
ORF1ab/nsp1275H75YCacTac33B.1.5260.000071
ORF1ab/nsp1275H75HcaCcaT33B.1.5760.00272
ORF1ab/nsp1275H75HcaCcaT33B.1.5770.002062
ORF1ab/nsp1275H75HcaCcaT33B.1.617.10.000387
ORF1ab/nsp1275H75HcaCcaT33B.30.002492
ORF1ab/nsp1275H75HcaCcaT33C.230.017442
ORF1ab/nsp1275H75HcaCcaT33N.50.0053
ORF1ab/nsp1275H75YCacTac33P.10.000047
ORF1ab/nsp1275H75HcaCcaT33P.30.004785
ORF1ab/nsp1275H75HcaCcaT33Q.30.000435
ORF1ab/nsp1275H75NCaCAaT120.055556
ORF1ab/nsp1275H75NCacAac120.055556
ORF1ab/nsp1275H75HcaCcaT22A0.000774
ORF1ab/nsp1275H75HcaCcaT22AD.20.000438
ORF1ab/nsp1275H75HcaCcaT22AE.10.022727
ORF1ab/nsp1275H75del2cACc--22All0
ORF1ab/nsp1275H75HcaCcaT22AY.1010.000981
ORF1ab/nsp1275H75HcaCcaT22AY.1090.001479
ORF1ab/nsp1275H75HcaCcaT22AY.1110.000366
ORF1ab/nsp1275H75delCAC---22AY.1200.000074
ORF1ab/nsp1275H75NCacAac22AY.1200.000074
ORF1ab/nsp1275H75HcaCcaT22AY.120.20.002571
ORF1ab/nsp1275H75YCacTac22AY.160.000759
ORF1ab/nsp1275H75YCacTac22AY.230.000139
ORF1ab/nsp1275H75HcaCcaT22AY.23.10.000835
ORF1ab/nsp1275H75YCacTac22AY.260.000057
ORF1ab/nsp1275H75HcaCcaT22AY.29.10.000441
ORF1ab/nsp1275H75YCacTac22AY.29.10.000441
ORF1ab/nsp1275H75PcAccCc22AY.30.00002
ORF1ab/nsp1275H75HcaCcaT22AY.360.000296
ORF1ab/nsp1275H75YCacTac22AY.39.10.000079
ORF1ab/nsp1275H75QcaCcaG12AY.40.000002
ORF1ab/nsp1275H75QcaCcaA12AY.40.000002
ORF1ab/nsp1275H75YCacTac22AY.4.50.000215
ORF1ab/nsp1275H75NCacAac22AY.430.000009
ORF1ab/nsp1275H75del1Cac-ac22AY.440.000012
ORF1ab/nsp1275H75HcaCcaT22AY.46.30.001867
ORF1ab/nsp1275H75HcaCcaT22AY.46.40.000329
ORF1ab/nsp1275H75HcaCcaT22AY.520.001629
ORF1ab/nsp1275H75HcaCcaT22AY.530.000575
ORF1ab/nsp1275H75HcaCcaT22AY.580.001815
ORF1ab/nsp1275H75HcaCcaT22AY.690.000373
ORF1ab/nsp1275H75HcaCcaT22AY.700.000417
ORF1ab/nsp1275H75HcaCcaT22AY.75.10.000361
ORF1ab/nsp1275H75YCacTac22AY.850.000854
ORF1ab/nsp1275H75HcaCcaT22AY.850.000854
ORF1ab/nsp1275H75YCacTac22AY.9.10.000167
ORF1ab/nsp1275H75HcaCcaT22AY.920.000575
ORF1ab/nsp1275H75HcaCcaT22AY.930.000546
ORF1ab/nsp1275H75PcAccCc12B.10.000009
ORF1ab/nsp1275H75PcACcCA12B.10.000009
ORF1ab/nsp1275H75YCacTac22B.1.10.000036
ORF1ab/nsp1275H75PcACcCA12B.1.10.000018
ORF1ab/nsp1275H75LcAccTc12B.1.10.000018
ORF1ab/nsp1275H75PcAccCc12B.1.10.000018
ORF1ab/nsp1275H75LcACcTA12B.1.10.000018
ORF1ab/nsp1275H75HcaCcaT22B.1.1.2070.002364
ORF1ab/nsp1275H75HcaCcaT22B.1.1.2220.000408
ORF1ab/nsp1275H75HcaCcaT22B.1.1.370.000386
ORF1ab/nsp1275H75HcaCcaT22B.1.1.3980.006452
ORF1ab/nsp1275H75HcaCcaT22B.1.1.4110.029412
ORF1ab/nsp1275H75HcaCcaT22B.1.1.4290.009217
ORF1ab/nsp1275H75HcaCcaT22B.1.1.4870.011173
ORF1ab/nsp1275H75NCacAac22B.1.1.5190.000079
ORF1ab/nsp1275H75YCacTac22B.1.1.5190.000079
ORF1ab/nsp1275H75HcaCcaT22B.1.1.630.000772
ORF1ab/nsp1275H75LcAccTc22B.1.1.70.000002
ORF1ab/nsp1275H75DCacGac22B.1.1.70.000002
ORF1ab/nsp1275H75HcaCcaT22B.1.1110.00235
ORF1ab/nsp1275H75QcaCcaA22B.1.1600.000062
ORF1ab/nsp1275H75HcaCcaT22B.1.160.160.001859
ORF1ab/nsp1275H75HcaCcaT22B.1.177.440.001038
ORF1ab/nsp1275H75QcaCcaA22B.1.20.000018
ORF1ab/nsp1275H75HcaCcaT22B.1.2360.004107
ORF1ab/nsp1275H75HcaCcaT22B.1.2650.002541
ORF1ab/nsp1275H75HcaCcaT22B.1.2790.001027
ORF1ab/nsp1275H75YCacTac22B.1.3360.004878
ORF1ab/nsp1275H75HcaCcaT22B.1.36.170.000988
ORF1ab/nsp1275H75HcaCcaT22B.1.3670.001585
ORF1ab/nsp1275H75YCacTac22B.1.3690.00057
ORF1ab/nsp1275H75HcaCcaT22B.1.4620.014493
ORF1ab/nsp1275H75HcaCcaT22B.1.6040.034483
ORF1ab/nsp1275H75YCacTac22B.1.617.10.000258
ORF1ab/nsp1275H75HcaCcaT22B.1.6180.008065
ORF1ab/nsp1275H75HcaCcaT22B.1.621.10.001012
ORF1ab/nsp1275H75HcaCcaT22B.1.6280.000705
ORF1ab/nsp1275H75HcaCcaT22C.160.002121
ORF1ab/nsp1275H75HcaCcaT22P.1.160.000748
ORF1ab/nsp1275H75HcaCcaT22P.1.170.000324
ORF1ab/nsp1275H75HcaCcaT22P.20.000373
ORF1ab/nsp1275H75HcaCcaT110.055556
ORF1ab/nsp1275H75YCacTac11A0.000387
ORF1ab/nsp1275H75HcaCcaT11A.10.000282
ORF1ab/nsp1275H75YCacTac11A.20.000662
ORF1ab/nsp1275H75HcaCcaT11A.2.20.001689
ORF1ab/nsp1275H75PcAccCc11AD.20.000219
ORF1ab/nsp1275H75YCacTac11AD.20.000219
ORF1ab/nsp1275H75HcaCcaT11AE.80.000489
ORF1ab/nsp1275H75KCaCAaA11All0
ORF1ab/nsp1275H75CCAcTGc11All0
ORF1ab/nsp1275H75ECaCGaA11All0
ORF1ab/nsp1275H75FCAcTTc11All0
ORF1ab/nsp1275H75HcaCcaT11AP.10.001502
ORF1ab/nsp1275H75HcaCcaT11AU.30.00211
ORF1ab/nsp1275H75HcaCcaT11AY.1050.000643
ORF1ab/nsp1275H75delCAC---11AY.1080.001103
ORF1ab/nsp1275H75HcaCcaT11AY.1150.005208
ORF1ab/nsp1275H75YCacTac11AY.1160.000287
ORF1ab/nsp1275H75del2cACc--11AY.1190.000035
ORF1ab/nsp1275H75HcaCcaT11AY.120.000316
ORF1ab/nsp1275H75HcaCcaT11AY.120.2.10.000498
ORF1ab/nsp1275H75YCacTac11AY.1210.000135
ORF1ab/nsp1275H75HcaCcaT11AY.150.002222
ORF1ab/nsp1275H75HcaCcaT11AY.160.00038
ORF1ab/nsp1275H75YCacTac11AY.190.00114
ORF1ab/nsp1275H75YCacTac11AY.210.001898
ORF1ab/nsp1275H75NCacAac11AY.240.000431
ORF1ab/nsp1275H75NCacAac11AY.250.000006
ORF1ab/nsp1275H75RcAccGc11AY.250.000006
ORF1ab/nsp1275H75delCAC---11AY.250.000006
ORF1ab/nsp1275H75del1Cac-ac11AY.320.000532
ORF1ab/nsp1275H75HcaCcaT11AY.320.000532
ORF1ab/nsp1275H75YCacTac11AY.34.10.00051
ORF1ab/nsp1275H75QcaCcaA11AY.360.000148
ORF1ab/nsp1275H75QcaCcaA11AY.4.20.000022
ORF1ab/nsp1275H75HcaCcaT11AY.4.2.10.000149
ORF1ab/nsp1275H75HcaCcaT11AY.4.40.000409
ORF1ab/nsp1275H75HcaCcaT11AY.410.000294
ORF1ab/nsp1275H75HcaCcaT11AY.46.20.000635
ORF1ab/nsp1275H75HcaCcaT11AY.46.50.000198
ORF1ab/nsp1275H75NCacAac11AY.46.60.000072
ORF1ab/nsp1275H75delCAC---11AY.50.000021
ORF1ab/nsp1275H75HcaCcaT11AY.5.30.000337
ORF1ab/nsp1275H75HcaCcaT11AY.5.40.000277
ORF1ab/nsp1275H75YCacTac11AY.510.000909
ORF1ab/nsp1275H75YCacTac11AY.540.000095
ORF1ab/nsp1275H75HcaCcaT11AY.560.001605
ORF1ab/nsp1275H75NCacAac11AY.60.000041
ORF1ab/nsp1275H75YCacTac11AY.620.000436
ORF1ab/nsp1275H75delCAC---11AY.660.00107
ORF1ab/nsp1275H75HcaCcaT11AY.670.000464
ORF1ab/nsp1275H75HcaCcaT11AY.70.000196
ORF1ab/nsp1275H75YCacTac11AY.7.10.000113
ORF1ab/nsp1275H75HcaCcaT11AY.730.000665
ORF1ab/nsp1275H75del1CAcT-c11AY.790.001211
ORF1ab/nsp1275H75HcaCcaT11AY.80.000606
ORF1ab/nsp1275H75HcaCcaT11AY.820.001357
ORF1ab/nsp1275H75YCacTac11AY.880.000884
ORF1ab/nsp1275H75YCacTac11AY.90.000068
ORF1ab/nsp1275H75QcaCcaA11AY.90.000068
ORF1ab/nsp1275H75HcaCcaT11AY.910.00073
ORF1ab/nsp1275H75YCacTac11AY.98.10.000048
ORF1ab/nsp1275H75delCAC---11AY.990.001049
ORF1ab/nsp1275H75HcaCcaT11AY.990.001049
ORF1ab/nsp1275H75HcaCcaT11AZ.20.000821
ORF1ab/nsp1275H75KCaCAaA11B.10.000009
ORF1ab/nsp1275H75CCAcTGc11B.10.000009
ORF1ab/nsp1275H75del1Cac-ac11B.10.000009
ORF1ab/nsp1275H75FCAcTTc11B.10.000009
ORF1ab/nsp1275H75del1Cac-ac11B.1.10.000018
ORF1ab/nsp1275H75NCacAac11B.1.10.000018
ORF1ab/nsp1275H75HcaCcaT11B.1.1.10.000327
ORF1ab/nsp1275H75delCAC---11B.1.1.10.000327
ORF1ab/nsp1275H75NCacAac11B.1.1.10.000327
ORF1ab/nsp1275H75HcaCcaT11B.1.1.100.001115
ORF1ab/nsp1275H75HcaCcaT11B.1.1.1010.01
ORF1ab/nsp1275H75HcaCcaT11B.1.1.1290.009174
ORF1ab/nsp1275H75delCAC---11B.1.1.1390.022727
ORF1ab/nsp1275H75HcaCcaT11B.1.1.1410.002012
ORF1ab/nsp1275H75HcaCcaT11B.1.1.1630.007634
ORF1ab/nsp1275H75YCacTac11B.1.1.1760.000439
ORF1ab/nsp1275H75HcaCcaT11B.1.1.1890.001513
ORF1ab/nsp1275H75HcaCcaT11B.1.1.1920.002309
ORF1ab/nsp1275H75HcaCcaT11B.1.1.1980.001468
ORF1ab/nsp1275H75HcaCcaT11B.1.1.2160.00089
ORF1ab/nsp1275H75YCacTac11B.1.1.2200.001859
ORF1ab/nsp1275H75HcaCcaT11B.1.1.2310.003096
ORF1ab/nsp1275H75HcaCcaT11B.1.1.2630.001558
ORF1ab/nsp1275H75HcaCcaT11B.1.1.2770.000759
ORF1ab/nsp1275H75HcaCcaT11B.1.1.2980.000862
ORF1ab/nsp1275H75HcaCcaT11B.1.1.3020.002075
ORF1ab/nsp1275H75HcaCcaT11B.1.1.3030.002762
ORF1ab/nsp1275H75HcaCcaT11B.1.1.3060.000438
ORF1ab/nsp1275H75HcaCcaT11B.1.1.3090.005848
ORF1ab/nsp1275H75HcaCcaT11B.1.1.3180.000302
ORF1ab/nsp1275H75HcaCcaT11B.1.1.3280.016949
ORF1ab/nsp1275H75HcaCcaT11B.1.1.3350.012987
ORF1ab/nsp1275H75delCAC---11B.1.1.3480.000796
ORF1ab/nsp1275H75YCacTac11B.1.1.3480.000796
ORF1ab/nsp1275H75HcaCcaT11B.1.1.3650.005587
ORF1ab/nsp1275H75NCacAac11B.1.1.370.000193
ORF1ab/nsp1275H75QcaCcaA11B.1.1.390.00051
ORF1ab/nsp1275H75HcaCcaT11B.1.1.3970.002252
ORF1ab/nsp1275H75HcaCcaT11B.1.1.4070.041667
ORF1ab/nsp1275H75YCacTac11B.1.1.4090.002833
ORF1ab/nsp1275H75ECaCGaA11B.1.1.4090.002833
ORF1ab/nsp1275H75QcaCcaA11B.1.1.4090.002833
ORF1ab/nsp1275H75DCacGac11B.1.1.4090.002833
ORF1ab/nsp1275H75XCaCTaA11B.1.1.4090.002833
ORF1ab/nsp1275H75HcaCcaT11B.1.1.4160.000905
ORF1ab/nsp1275H75HcaCcaT11B.1.1.4190.007407
ORF1ab/nsp1275H75DCacGac11B.1.1.4320.001266
ORF1ab/nsp1275H75YCacTac11B.1.1.4850.016667
ORF1ab/nsp1275H75HcaCcaT11B.1.1.500.000679
ORF1ab/nsp1275H75HcaCcaT11B.1.1.5070.008696
ORF1ab/nsp1275H75HcaCcaT11B.1.1.5230.001563
ORF1ab/nsp1275H75RcAccGc11B.1.1.70.000001
ORF1ab/nsp1275H75del2cACc--11B.1.1.70.000001
ORF1ab/nsp1275H75HcaCcaT11B.1.1.80.003584
ORF1ab/nsp1275H75HcaCcaT11B.1.1280.000635
ORF1ab/nsp1275H75DCacGac11B.1.1390.000733
ORF1ab/nsp1275H75HcaCcaT11B.1.1390.000733
ORF1ab/nsp1275H75HcaCcaT11B.1.160.140.002119
ORF1ab/nsp1275H75delCAC---11B.1.1610.017241
ORF1ab/nsp1275H75HcaCcaT11B.1.177.100.000878
ORF1ab/nsp1275H75HcaCcaT11B.1.177.110.001698
ORF1ab/nsp1275H75HcaCcaT11B.1.177.160.000664
ORF1ab/nsp1275H75HcaCcaT11B.1.177.170.000821
ORF1ab/nsp1275H75HcaCcaT11B.1.177.30.007634
ORF1ab/nsp1275H75HcaCcaT11B.1.177.330.001645
ORF1ab/nsp1275H75NCacAac11B.1.177.330.001645
ORF1ab/nsp1275H75YCacTac11B.1.177.40.000211
ORF1ab/nsp1275H75HcaCcaT11B.1.177.560.000668
ORF1ab/nsp1275H75HcaCcaT11B.1.177.600.000218
ORF1ab/nsp1275H75HcaCcaT11B.1.177.650.000665
ORF1ab/nsp1275H75HcaCcaT11B.1.177.690.001484
ORF1ab/nsp1275H75HcaCcaT11B.1.177.730.000566
ORF1ab/nsp1275H75HcaCcaT11B.1.177.750.001041
ORF1ab/nsp1275H75HcaCcaT11B.1.177.760.002494
ORF1ab/nsp1275H75HcaCcaT11B.1.177.770.000726
ORF1ab/nsp1275H75NCacAac11B.1.177.810.000189
ORF1ab/nsp1275H75LcAccTc11B.1.20.000009
ORF1ab/nsp1275H75DCacGac11B.1.20.000009
ORF1ab/nsp1275H75HcaCcaT11B.1.2060.000816
ORF1ab/nsp1275H75HcaCcaT11B.1.214.20.0006
ORF1ab/nsp1275H75HcaCcaT11B.1.2180.005155
ORF1ab/nsp1275H75HcaCcaT11B.1.2220.001692
ORF1ab/nsp1275H75YCacTac11B.1.2410.000812
ORF1ab/nsp1275H75NCacAac11B.1.2580.000067
ORF1ab/nsp1275H75YCacTac11B.1.2580.000067
ORF1ab/nsp1275H75HcaCcaT11B.1.258.110.000396
ORF1ab/nsp1275H75HcaCcaT11B.1.2980.002114
ORF1ab/nsp1275H75HcaCcaT11B.1.3490.000715
ORF1ab/nsp1275H75YCacTac11B.1.3510.00003
ORF1ab/nsp1275H75HcaCcaT11B.1.351.30.000876
ORF1ab/nsp1275H75HcaCcaT11B.1.36.10.00114
ORF1ab/nsp1275H75HcaCcaT11B.1.36.70.004
ORF1ab/nsp1275H75NCacAac11B.1.3690.000285
ORF1ab/nsp1275H75HcaCcaT11B.1.3690.000285
ORF1ab/nsp1275H75HcaCcaT11B.1.390.003906
ORF1ab/nsp1275H75HcaCcaT11B.1.3960.000706
ORF1ab/nsp1275H75HcaCcaT11B.1.3970.004854
ORF1ab/nsp1275H75YCacTac11B.1.3990.001934
ORF1ab/nsp1275H75SCAcAGc11B.1.4150.014286
ORF1ab/nsp1275H75HcaCcaT11B.1.466.10.007194
ORF1ab/nsp1275H75HcaCcaT11B.1.4700.001404
ORF1ab/nsp1275H75HcaCcaT11B.1.4990.00105
ORF1ab/nsp1275H75HcaCcaT11B.1.5070.011236
ORF1ab/nsp1275H75YCacTac11B.1.5240.001406
ORF1ab/nsp1275H75RcACcGA11B.1.5250.000113
ORF1ab/nsp1275H75RcAccGc11B.1.5260.000024
ORF1ab/nsp1275H75HcaCcaT11B.1.5380.008065
ORF1ab/nsp1275H75HcaCcaT11B.1.5500.013699
ORF1ab/nsp1275H75HcaCcaT11B.1.5600.00463
ORF1ab/nsp1275H75QcaCcaA11B.1.5610.000397
ORF1ab/nsp1275H75HcaCcaT11B.1.5620.018519
ORF1ab/nsp1275H75HcaCcaT11B.1.5640.000426
ORF1ab/nsp1275H75RcAccGc11B.1.5640.000426
ORF1ab/nsp1275H75PcAccCc11B.1.5640.000426
ORF1ab/nsp1275H75HcaCcaT11B.1.5660.019231
ORF1ab/nsp1275H75HcaCcaT11B.1.5800.004065
ORF1ab/nsp1275H75HcaCcaT11B.1.5880.00091
ORF1ab/nsp1275H75HcaCcaT11B.1.5900.004545
ORF1ab/nsp1275H75YCacTac11B.1.5950.000261
ORF1ab/nsp1275H75HcaCcaT11B.1.5990.00365
ORF1ab/nsp1275H75HcaCcaT11B.1.6020.006536
ORF1ab/nsp1275H75HcaCcaT11B.1.6100.003546
ORF1ab/nsp1275H75del1Cac-ac11B.1.617.20.000004
ORF1ab/nsp1275H75DCacGac11B.1.617.20.000004
ORF1ab/nsp1275H75delCAC---11B.1.617.20.000004
ORF1ab/nsp1275H75HcaCcaT11B.1.6270.00202
ORF1ab/nsp1275H75YCacTac11B.1.6280.000352
ORF1ab/nsp1275H75delCAC---11B.1.6300.005236
ORF1ab/nsp1275H75RcAccGc11B.1.6370.000073
ORF1ab/nsp1275H75YCacTac11B.1.6370.000073
ORF1ab/nsp1275H75HcaCcaT11B.1.940.027027
ORF1ab/nsp1275H75HcaCcaT11B.4.60.016667
ORF1ab/nsp1275H75YCacTac11B.400.000364
ORF1ab/nsp1275H75HcaCcaT11B.6.80.008264
ORF1ab/nsp1275H75HcaCcaT11C.140.004329
ORF1ab/nsp1275H75delCAC---11C.170.055556
ORF1ab/nsp1275H75HcaCcaT11C.180.002591
ORF1ab/nsp1275H75HcaCcaT11C.300.001727
ORF1ab/nsp1275H75NCacAac11C.350.000774
ORF1ab/nsp1275H75HcaCcaT11D.20.000075
ORF1ab/nsp1275H75YCacTac11D.20.000075
ORF1ab/nsp1275H75HcaCcaT11N.10.016949
ORF1ab/nsp1275H75HcaCcaT11N.40.004255
ORF1ab/nsp1275H75YCacTac11P.1.10.000318
ORF1ab/nsp1275H75HcaCcaT11P.1.70.000319
ORF1ab/nsp1275H75YCacTac11P.1.70.000319
ORF1ab/nsp1275H75YCacTac11P.20.000187
ORF1ab/nsp1275H75YCacTac11Q.30.000145
ORF1ab/nsp1275H75HcaCcaT11Q.40.000455
ORF1ab/nsp1275H75HcaCcaT11Y.10.012821