CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 742

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12742V742VV5134VsyngtGgtT4172990.71702615664-15666
ORF1ab/nsp12742V742VV5134VsyngtGgtA417990.2374115664-15666
ORF1ab/nsp12742V742VV5134VsyngtGgtC417190.045563515664-15666
ORF1ab/nsp12742V742LV5134LnonsynGtgTtg3723670.98655915664-15666
ORF1ab/nsp12742V742LV5134LnonsynGtgCtg37250.013440915664-15666
ORF1ab/nsp12742V742AV5134AnonsyngTggCg130130115664-15666
ORF1ab/nsp12742V742MV5134MnonsynGtgAtg6666115664-15666
ORF1ab/nsp12742V742delV5134deldelGTG---1515115664-15666
ORF1ab/nsp12742V742GV5134GnonsyngTggGg1090.915664-15666
ORF1ab/nsp12742V742GV5134GnonsyngTGgGA1010.115664-15666
ORF1ab/nsp12742V742EV5134EnonsyngTggAg66115664-15666
ORF1ab/nsp12742V742KV5134KnonsynGTgAAg430.7515664-15666
ORF1ab/nsp12742V742del1V5134del1delGtg-tg430.7515664-15666
ORF1ab/nsp12742V742del1V5134del1delGTgA-g410.2515664-15666
ORF1ab/nsp12742V742KV5134KnonsynGTGAAA410.2515664-15666
ORF1ab/nsp12742V742RV5134RnonsynGTgAGg22115664-15666
ORF1ab/nsp12742V742del2V5134del2delGTG--C11115664-15666
ORF1ab/nsp12742V742XV5134XnonsynGTGTAA11115664-15666

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12742V742VgtGgtT299417All0.000057
ORF1ab/nsp12742V742VgtGgtA99417All0.000019
ORF1ab/nsp12742V742VgtGgtC19417All0.000004
ORF1ab/nsp12742V742LGtgTtg367372All0.00007
ORF1ab/nsp12742V742LGtgCtg5372All0.000001
ORF1ab/nsp12742V742VgtGgtT137140B.1.1.70.000123
ORF1ab/nsp12742V742VgtGgtC2140B.1.1.70.000002
ORF1ab/nsp12742V742VgtGgtA1140B.1.1.70.000001
ORF1ab/nsp12742V742LGtgTtg138138AY.140.012146
ORF1ab/nsp12742V742AgTggCg130130All0.000025
ORF1ab/nsp12742V742MGtgAtg6666All0.000013
ORF1ab/nsp12742V742VgtGgtT6666AY.39.10.002614
ORF1ab/nsp12742V742AgTggCg6464B.1.5260.001504
ORF1ab/nsp12742V742LGtgTtg4244B.1.1.70.000038
ORF1ab/nsp12742V742LGtgCtg244B.1.1.70.000002
ORF1ab/nsp12742V742VgtGgtT2633AY.40.00004
ORF1ab/nsp12742V742VgtGgtA533AY.40.000008
ORF1ab/nsp12742V742VgtGgtC233AY.40.000003
ORF1ab/nsp12742V742LGtgTtg3030B.1.617.20.000113
ORF1ab/nsp12742V742LGtgTtg2222AY.440.000134
ORF1ab/nsp12742V742MGtgAtg1818AY.40.000028
ORF1ab/nsp12742V742VgtGgtA1717B.1.4090.013281
ORF1ab/nsp12742V742LGtgTtg1616AY.40.000025
ORF1ab/nsp12742V742VgtGgtA1616B.1.1.3301
ORF1ab/nsp12742V742delGTG---1515All0.000003
ORF1ab/nsp12742V742VgtGgtT1415AY.430.000062
ORF1ab/nsp12742V742VgtGgtA115AY.430.000004
ORF1ab/nsp12742V742AgTggCg1212AY.40.000019
ORF1ab/nsp12742V742AgTggCg1111AY.1160.003155
ORF1ab/nsp12742V742LGtgTtg1111B.1.1600.000343
ORF1ab/nsp12742V742GgTggGg910All0.000002
ORF1ab/nsp12742V742GgTGgGA110All0
ORF1ab/nsp12742V742LGtgTtg1010AY.260.000283
ORF1ab/nsp12742V742VgtGgtC710B.1.1770.000092
ORF1ab/nsp12742V742VgtGgtT310B.1.1770.00004
ORF1ab/nsp12742V742MGtgAtg1010B.1.177.650.006653
ORF1ab/nsp12742V742VgtGgtA610B.1.617.20.000023
ORF1ab/nsp12742V742VgtGgtT410B.1.617.20.000015
ORF1ab/nsp12742V742LGtgTtg99AY.1030.000056
ORF1ab/nsp12742V742LGtgTtg88AY.690.001493
ORF1ab/nsp12742V742VgtGgtT58B.1.10.000091
ORF1ab/nsp12742V742VgtGgtA38B.1.10.000054
ORF1ab/nsp12742V742AgTggCg88B.1.1.70.000007
ORF1ab/nsp12742V742GgTggGg88B.1.20.00007
ORF1ab/nsp12742V742EgTggAg66All0.000001
ORF1ab/nsp12742V742VgtGgtT66AY.1030.000037
ORF1ab/nsp12742V742VgtGgtT36B.10.000027
ORF1ab/nsp12742V742VgtGgtA36B.10.000027
ORF1ab/nsp12742V742LGtgTtg66B.1.1.500.004073
ORF1ab/nsp12742V742VgtGgtA46B.1.4290.000094
ORF1ab/nsp12742V742VgtGgtT26B.1.4290.000047
ORF1ab/nsp12742V742LGtgTtg55AY.1020.000133
ORF1ab/nsp12742V742LGtgTtg55AY.350.001165
ORF1ab/nsp12742V742LGtgTtg55AY.430.000022
ORF1ab/nsp12742V742MGtgAtg55B.1.1.3240.263158
ORF1ab/nsp12742V742VgtGgtA55B.1.1.3960.227273
ORF1ab/nsp12742V742VgtGgtA45B.1.20.000035
ORF1ab/nsp12742V742VgtGgtC15B.1.20.000009
ORF1ab/nsp12742V742KGTgAAg34All0.000001
ORF1ab/nsp12742V742del1Gtg-tg34All0.000001
ORF1ab/nsp12742V742KGTGAAA14All0
ORF1ab/nsp12742V742del1GTgA-g14All0
ORF1ab/nsp12742V742AgTggCg44AY.30.00004
ORF1ab/nsp12742V742VgtGgtA44AY.370.001264
ORF1ab/nsp12742V742VgtGgtC24AY.4.20.000043
ORF1ab/nsp12742V742VgtGgtT14AY.4.20.000022
ORF1ab/nsp12742V742VgtGgtA14AY.4.20.000022
ORF1ab/nsp12742V742LGtgTtg44AY.470.000124
ORF1ab/nsp12742V742VgtGgtT24AY.470.000062
ORF1ab/nsp12742V742VgtGgtA24AY.470.000062
ORF1ab/nsp12742V742VgtGgtC44AY.520.003257
ORF1ab/nsp12742V742delGTG---44B.1.1.70.000004
ORF1ab/nsp12742V742VgtGgtT44B.1.1110.0047
ORF1ab/nsp12742V742LGtgTtg44B.1.20.000035
ORF1ab/nsp12742V742LGtgTtg44B.1.3510.000119
ORF1ab/nsp12742V742VgtGgtA33AY.1020.00008
ORF1ab/nsp12742V742MGtgAtg33AY.1030.000019
ORF1ab/nsp12742V742VgtGgtT33AY.200.000117
ORF1ab/nsp12742V742LGtgTtg33AY.250.000018
ORF1ab/nsp12742V742LGtgTtg33AY.380.001498
ORF1ab/nsp12742V742LGtgTtg33AY.390.000074
ORF1ab/nsp12742V742MGtgAtg33AY.430.000013
ORF1ab/nsp12742V742VgtGgtA33AY.440.000018
ORF1ab/nsp12742V742LGtgTtg33AY.980.000237
ORF1ab/nsp12742V742LGtgTtg33B.10.000027
ORF1ab/nsp12742V742MGtgAtg33B.1.1.70.000003
ORF1ab/nsp12742V742VgtGgtT33B.1.1600.000094
ORF1ab/nsp12742V742VgtGgtA33B.1.258.170.000312
ORF1ab/nsp12742V742AgTggCg33B.30.002492
ORF1ab/nsp12742V742VgtGgtA23D.20.00015
ORF1ab/nsp12742V742VgtGgtT13D.20.000075
ORF1ab/nsp12742V742LGtgTtg23P.10.000032
ORF1ab/nsp12742V742LGtgCtg13P.10.000016
ORF1ab/nsp12742V742RGTgAGg220.111111
ORF1ab/nsp12742V742EgTggAg220.111111
ORF1ab/nsp12742V742AgTggCg220.111111
ORF1ab/nsp12742V742KGTgAAg220.111111
ORF1ab/nsp12742V742MGtgAtg220.111111
ORF1ab/nsp12742V742RGTgAGg22All0
ORF1ab/nsp12742V742EgTggAg22AY.1020.000053
ORF1ab/nsp12742V742AgTggCg22AY.1040.003968
ORF1ab/nsp12742V742MGtgAtg22AY.1100.000225
ORF1ab/nsp12742V742VgtGgtT22AY.1190.000071
ORF1ab/nsp12742V742LGtgTtg22AY.190.002281
ORF1ab/nsp12742V742AgTggCg22AY.250.000012
ORF1ab/nsp12742V742MGtgAtg22AY.270.000129
ORF1ab/nsp12742V742AgTggCg22AY.330.000134
ORF1ab/nsp12742V742del1Gtg-tg12AY.440.000006
ORF1ab/nsp12742V742del1GTgA-g12AY.440.000006
ORF1ab/nsp12742V742LGtgTtg22AY.540.000191
ORF1ab/nsp12742V742AgTggCg22AY.60.000082
ORF1ab/nsp12742V742AgTggCg22B.10.000018
ORF1ab/nsp12742V742LGtgTtg22B.1.10.000036
ORF1ab/nsp12742V742VgtGgtA22B.1.177.120.000303
ORF1ab/nsp12742V742MGtgAtg22B.1.177.440.001038
ORF1ab/nsp12742V742VgtGgtT12B.1.2210.000071
ORF1ab/nsp12742V742VgtGgtA12B.1.2210.000071
ORF1ab/nsp12742V742VgtGgtA12B.1.5260.000024
ORF1ab/nsp12742V742VgtGgtT12B.1.5260.000024
ORF1ab/nsp12742V742AgTggCg22B.1.617.20.000008
ORF1ab/nsp12742V742GgTGgGA12B.3.10.001658
ORF1ab/nsp12742V742GgTggGg12B.3.10.001658
ORF1ab/nsp12742V742LGtgTtg11A.10.000282
ORF1ab/nsp12742V742del2GTG--C11All0
ORF1ab/nsp12742V742XGTGTAA11All0
ORF1ab/nsp12742V742MGtgAtg11AY.1020.000027
ORF1ab/nsp12742V742VgtGgtT11AY.1130.000142
ORF1ab/nsp12742V742LGtgTtg11AY.1160.000287
ORF1ab/nsp12742V742VgtGgtA11AY.1180.000063
ORF1ab/nsp12742V742MGtgAtg11AY.1200.000037
ORF1ab/nsp12742V742AgTggCg11AY.200.000039
ORF1ab/nsp12742V742MGtgAtg11AY.230.00007
ORF1ab/nsp12742V742VgtGgtA11AY.250.000006
ORF1ab/nsp12742V742MGtgAtg11AY.250.000006
ORF1ab/nsp12742V742VgtGgtA11AY.260.000028
ORF1ab/nsp12742V742LGtgTtg11AY.270.000065
ORF1ab/nsp12742V742LGtgTtg11AY.290.000016
ORF1ab/nsp12742V742VgtGgtT11AY.290.000016
ORF1ab/nsp12742V742VgtGgtA11AY.30.00001
ORF1ab/nsp12742V742LGtgTtg11AY.30.00001
ORF1ab/nsp12742V742delGTG---11AY.30.00001
ORF1ab/nsp12742V742AgTggCg11AY.350.000233
ORF1ab/nsp12742V742VgtGgtT11AY.390.000025
ORF1ab/nsp12742V742VgtGgtT11AY.39.1.10.000725
ORF1ab/nsp12742V742delGTG---11AY.40.000002
ORF1ab/nsp12742V742LGtgTtg11AY.420.00004
ORF1ab/nsp12742V742del2GTG--C11AY.430.000004
ORF1ab/nsp12742V742AgTggCg11AY.430.000004
ORF1ab/nsp12742V742EgTggAg11AY.430.000004
ORF1ab/nsp12742V742VgtGgtT11AY.460.000104
ORF1ab/nsp12742V742LGtgTtg11AY.460.000104
ORF1ab/nsp12742V742LGtgTtg11AY.50.000021
ORF1ab/nsp12742V742VgtGgtT11AY.60.000041
ORF1ab/nsp12742V742LGtgTtg11AY.610.000105
ORF1ab/nsp12742V742VgtGgtT11AY.610.000105
ORF1ab/nsp12742V742delGTG---11AY.670.000464
ORF1ab/nsp12742V742KGTgAAg11AY.670.000464
ORF1ab/nsp12742V742AgTggCg11AY.750.000056
ORF1ab/nsp12742V742LGtgTtg11AY.75.10.00018
ORF1ab/nsp12742V742LGtgTtg11AY.770.001127
ORF1ab/nsp12742V742LGtgTtg11AY.840.000437
ORF1ab/nsp12742V742LGtgTtg11AY.90.000068
ORF1ab/nsp12742V742delGTG---11AY.90.000068
ORF1ab/nsp12742V742MGtgAtg11AY.9.20.000037
ORF1ab/nsp12742V742VgtGgtA11AY.920.000287
ORF1ab/nsp12742V742LGtgTtg11AY.970.001701
ORF1ab/nsp12742V742MGtgAtg11B0.000128
ORF1ab/nsp12742V742del1Gtg-tg11B0.000128
ORF1ab/nsp12742V742delGTG---11B.10.000009
ORF1ab/nsp12742V742MGtgAtg11B.1.10.000018
ORF1ab/nsp12742V742KGTGAAA11B.1.10.000018
ORF1ab/nsp12742V742XGTGTAA11B.1.10.000018
ORF1ab/nsp12742V742VgtGgtC11B.1.1.3060.000438
ORF1ab/nsp12742V742LGtgTtg11B.1.1.3170.000412
ORF1ab/nsp12742V742VgtGgtT11B.1.1.330.000421
ORF1ab/nsp12742V742MGtgAtg11B.1.1.3550.015385
ORF1ab/nsp12742V742LGtgTtg11B.1.1.3690.000446
ORF1ab/nsp12742V742AgTggCg11B.1.1.3720.000689
ORF1ab/nsp12742V742VgtGgtA11B.1.1.3750.011905
ORF1ab/nsp12742V742VgtGgtT11B.1.1.620.027027
ORF1ab/nsp12742V742delGTG---11B.1.1.700.000341
ORF1ab/nsp12742V742LGtgTtg11B.1.1.890.006061
ORF1ab/nsp12742V742LGtgTtg11B.1.110.30.000718
ORF1ab/nsp12742V742LGtgTtg11B.1.1260.001276
ORF1ab/nsp12742V742MGtgAtg11B.1.160.160.000929
ORF1ab/nsp12742V742delGTG---11B.1.1770.000013
ORF1ab/nsp12742V742AgTggCg11B.1.177.190.001431
ORF1ab/nsp12742V742AgTggCg11B.1.177.230.003236
ORF1ab/nsp12742V742LGtgCtg11B.1.177.440.000519
ORF1ab/nsp12742V742delGTG---11B.1.177.510.004566
ORF1ab/nsp12742V742AgTggCg11B.1.177.600.000218
ORF1ab/nsp12742V742LGtgCtg11B.1.177.830.001481
ORF1ab/nsp12742V742MGtgAtg11B.1.177.860.000183
ORF1ab/nsp12742V742MGtgAtg11B.1.20.000009
ORF1ab/nsp12742V742del1Gtg-tg11B.1.20.000009
ORF1ab/nsp12742V742EgTggAg11B.1.20.000009
ORF1ab/nsp12742V742AgTggCg11B.1.20.000009
ORF1ab/nsp12742V742MGtgAtg11B.1.2210.000071
ORF1ab/nsp12742V742VgtGgtA11B.1.221.10.002907
ORF1ab/nsp12742V742VgtGgtA11B.1.2320.000537
ORF1ab/nsp12742V742LGtgTtg11B.1.2580.000067
ORF1ab/nsp12742V742delGTG---11B.1.2580.000067
ORF1ab/nsp12742V742VgtGgtT11B.1.3510.00003
ORF1ab/nsp12742V742LGtgTtg11B.1.4000.000429
ORF1ab/nsp12742V742VgtGgtT11B.1.4250.002994
ORF1ab/nsp12742V742LGtgTtg11B.1.4270.00005
ORF1ab/nsp12742V742VgtGgtA11B.1.4320.011236
ORF1ab/nsp12742V742VgtGgtT11B.1.4680.005714
ORF1ab/nsp12742V742AgTggCg11B.1.5170.000427
ORF1ab/nsp12742V742VgtGgtT11B.1.5170.000427
ORF1ab/nsp12742V742LGtgTtg11B.1.5260.000024
ORF1ab/nsp12742V742VgtGgtA11B.1.5820.000491
ORF1ab/nsp12742V742MGtgAtg11B.1.5820.000491
ORF1ab/nsp12742V742MGtgAtg11B.1.5950.000261
ORF1ab/nsp12742V742VgtGgtT11B.1.5960.000087
ORF1ab/nsp12742V742MGtgAtg11B.1.617.20.000004
ORF1ab/nsp12742V742delGTG---11B.1.617.20.000004
ORF1ab/nsp12742V742LGtgTtg11B.1.6230.000536
ORF1ab/nsp12742V742AgTggCg11B.1.6370.000073
ORF1ab/nsp12742V742VgtGgtA11B.3.10.001658
ORF1ab/nsp12742V742VgtGgtT11B.60.00091
ORF1ab/nsp12742V742LGtgTtg11D.20.000075
ORF1ab/nsp12742V742MGtgAtg11P.10.000016
ORF1ab/nsp12742V742AgTggCg11P.1.150.000232
ORF1ab/nsp12742V742VgtGgtA11P.1.70.000319
ORF1ab/nsp12742V742delGTG---11Q.10.000126
ORF1ab/nsp12742V742AgTggCg11Q.80.000165
ORF1ab/nsp12742V742AgTggCg11R.10.00009