CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 738 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12738D738DD5130DsyngaCgaT97469746115652-15654

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12738D738DgaCgaT97469746All0.001864
ORF1ab/nsp12738D738DgaCgaT35773577AY.390.088393
ORF1ab/nsp12738D738DgaCgaT13541354B.1.1.70.001212
ORF1ab/nsp12738D738DgaCgaT841841AY.40.001309
ORF1ab/nsp12738D738DgaCgaT393393B.1.5640.167376
ORF1ab/nsp12738D738DgaCgaT227227B.1.617.20.000855
ORF1ab/nsp12738D738DgaCgaT174174AY.1030.00108
ORF1ab/nsp12738D738DgaCgaT158158AY.330.010551
ORF1ab/nsp12738D738DgaCgaT157157B.1.1770.002067
ORF1ab/nsp12738D738DgaCgaT151151B.10.001383
ORF1ab/nsp12738D738DgaCgaT151151B.1.20.00133
ORF1ab/nsp12738D738DgaCgaT147147AY.290.002319
ORF1ab/nsp12738D738DgaCgaT142142AY.250.000854
ORF1ab/nsp12738D738DgaCgaT129129B.1.1.2430.526531
ORF1ab/nsp12738D738DgaCgaT119119B.1.6060.716867
ORF1ab/nsp12738D738DgaCgaT113113B.1.1.330.047559
ORF1ab/nsp12738D738DgaCgaT112112B.1.1460.474576
ORF1ab/nsp12738D738DgaCgaT111111R.10.009991
ORF1ab/nsp12738D738DgaCgaT9797B.1.177.810.018364
ORF1ab/nsp12738D738DgaCgaT7575AY.430.000332
ORF1ab/nsp12738D738DgaCgaT7272B.1.10.001306
ORF1ab/nsp12738D738DgaCgaT6868AY.460.007077
ORF1ab/nsp12738D738DgaCgaT6868B.1.5960.005925
ORF1ab/nsp12738D738DgaCgaT6666B.1.6370.004823
ORF1ab/nsp12738D738DgaCgaT6262AY.30.000617
ORF1ab/nsp12738D738DgaCgaT5555B.1.5260.001293
ORF1ab/nsp12738D738DgaCgaT4545AY.440.000274
ORF1ab/nsp12738D738DgaCgaT4545B.1.1600.001403
ORF1ab/nsp12738D738DgaCgaT3838AY.750.002129
ORF1ab/nsp12738D738DgaCgaT3838B.1.4290.000894
ORF1ab/nsp12738D738DgaCgaT3333B.1.2430.002296
ORF1ab/nsp12738D738DgaCgaT3030B.1.258.170.003119
ORF1ab/nsp12738D738DgaCgaT2626P.10.00041
ORF1ab/nsp12738D738DgaCgaT2525AY.1020.000663
ORF1ab/nsp12738D738DgaCgaT2424AY.39.10.000951
ORF1ab/nsp12738D738DgaCgaT2121B.1.1.3980.067742
ORF1ab/nsp12738D738DgaCgaT2121B.1.2340.002771
ORF1ab/nsp12738D738DgaCgaT2020B.1.1.700.006821
ORF1ab/nsp12738D738DgaCgaT2020B.1.3510.000595
ORF1ab/nsp12738D738DgaCgaT1919B.1.1.5190.000755
ORF1ab/nsp12738D738DgaCgaT1818AY.1190.000636
ORF1ab/nsp12738D738DgaCgaT1818AY.470.00056
ORF1ab/nsp12738D738DgaCgaT1717AY.200.000661
ORF1ab/nsp12738D738DgaCgaT1717AY.50.000351
ORF1ab/nsp12738D738DgaCgaT1616B.1.177.830.023704
ORF1ab/nsp12738D738DgaCgaT1515B.1.5250.001697
ORF1ab/nsp12738D738DgaCgaT1414B.1.5950.003653
ORF1ab/nsp12738D738DgaCgaT1414N.50.024735
ORF1ab/nsp12738D738DgaCgaT1313AY.160.004935
ORF1ab/nsp12738D738DgaCgaT1313AY.46.50.002579
ORF1ab/nsp12738D738DgaCgaT1313B.1.6210.001151
ORF1ab/nsp12738D738DgaCgaT1212AY.980.000948
ORF1ab/nsp12738D738DgaCgaT1212B.1.1.2800.037037
ORF1ab/nsp12738D738DgaCgaT1212B.1.6180.048387
ORF1ab/nsp12738D738DgaCgaT1111AY.1090.008136
ORF1ab/nsp12738D738DgaCgaT1010AY.230.000697
ORF1ab/nsp12738D738DgaCgaT1010AY.4.20.000217
ORF1ab/nsp12738D738DgaCgaT1010B.1.2580.000665
ORF1ab/nsp12738D738DgaCgaT99AY.10.003562
ORF1ab/nsp12738D738DgaCgaT99B0.00115
ORF1ab/nsp12738D738DgaCgaT99B.1.36.290.004656
ORF1ab/nsp12738D738DgaCgaT88B.1.1.1530.008762
ORF1ab/nsp12738D738DgaCgaT88B.1.177.500.037559
ORF1ab/nsp12738D738DgaCgaT88P.1.140.000382
ORF1ab/nsp12738D738DgaCgaT77AH.11
ORF1ab/nsp12738D738DgaCgaT77AY.60.000288
ORF1ab/nsp12738D738DgaCgaT77AY.860.005809
ORF1ab/nsp12738D738DgaCgaT77AY.920.002011
ORF1ab/nsp12738D738DgaCgaT77B.1.3690.001997
ORF1ab/nsp12738D738DgaCgaT77B.1.4270.000353
ORF1ab/nsp12738D738DgaCgaT77C.370.000812
ORF1ab/nsp12738D738DgaCgaT66AY.420.000241
ORF1ab/nsp12738D738DgaCgaT66AY.9.20.00022
ORF1ab/nsp12738D738DgaCgaT66AY.99.20.000553
ORF1ab/nsp12738D738DgaCgaT66D.20.00045
ORF1ab/nsp12738D738DgaCgaT55AY.1180.000313
ORF1ab/nsp12738D738DgaCgaT55AY.140.00044
ORF1ab/nsp12738D738DgaCgaT55AY.300.001979
ORF1ab/nsp12738D738DgaCgaT55AY.340.000485
ORF1ab/nsp12738D738DgaCgaT55AY.4.2.10.000745
ORF1ab/nsp12738D738DgaCgaT55AY.610.000524
ORF1ab/nsp12738D738DgaCgaT55B.1.1.3180.001509
ORF1ab/nsp12738D738DgaCgaT55B.1.1.630.001929
ORF1ab/nsp12738D738DgaCgaT55B.1.177.210.000382
ORF1ab/nsp12738D738DgaCgaT55Z.10.014451
ORF1ab/nsp12738D738DgaCgaT44AY.1170.000338
ORF1ab/nsp12738D738DgaCgaT44AY.1200.000149
ORF1ab/nsp12738D738DgaCgaT44AY.130.000644
ORF1ab/nsp12738D738DgaCgaT44AY.590.002119
ORF1ab/nsp12738D738DgaCgaT44B.1.1.2140.000222
ORF1ab/nsp12738D738DgaCgaT44B.1.1.280.001245
ORF1ab/nsp12738D738DgaCgaT44B.1.177.160.002658
ORF1ab/nsp12738D738DgaCgaT44B.1.177.440.002076
ORF1ab/nsp12738D738DgaCgaT44B.1.177.870.002911
ORF1ab/nsp12738D738DgaCgaT44B.1.2650.005083
ORF1ab/nsp12738D738DgaCgaT44B.1.360.000584
ORF1ab/nsp12738D738DgaCgaT44B.1.617.10.000516
ORF1ab/nsp12738D738DgaCgaT44B.1.6280.001409
ORF1ab/nsp12738D738DgaCgaT44P.20.000747
ORF1ab/nsp12738D738DgaCgaT33A.2.50.001497
ORF1ab/nsp12738D738DgaCgaT33AY.1130.000427
ORF1ab/nsp12738D738DgaCgaT33AY.260.000085
ORF1ab/nsp12738D738DgaCgaT33AY.360.000445
ORF1ab/nsp12738D738DgaCgaT33AY.380.001498
ORF1ab/nsp12738D738DgaCgaT33AY.39.20.004622
ORF1ab/nsp12738D738DgaCgaT33AY.4.40.001227
ORF1ab/nsp12738D738DgaCgaT33AY.46.60.000217
ORF1ab/nsp12738D738DgaCgaT33AY.480.001395
ORF1ab/nsp12738D738DgaCgaT33AY.540.000286
ORF1ab/nsp12738D738DgaCgaT33AY.580.002722
ORF1ab/nsp12738D738DgaCgaT33AY.70.000588
ORF1ab/nsp12738D738DgaCgaT33AY.98.10.000145
ORF1ab/nsp12738D738DgaCgaT33B.1.1.2220.000612
ORF1ab/nsp12738D738DgaCgaT33B.1.1.3560.025641
ORF1ab/nsp12738D738DgaCgaT33B.1.2390.003663
ORF1ab/nsp12738D738DgaCgaT33B.1.2600.010033
ORF1ab/nsp12738D738DgaCgaT33B.1.416.10.004687
ORF1ab/nsp12738D738DgaCgaT33B.1.5180.035294
ORF1ab/nsp12738D738DgaCgaT33B.1.5510.003871
ORF1ab/nsp12738D738DgaCgaT33B.1.5820.001472
ORF1ab/nsp12738D738DgaCgaT33B.1.780.025641
ORF1ab/nsp12738D738DgaCgaT33C.160.003181
ORF1ab/nsp12738D738DgaCgaT33P.1.120.001452
ORF1ab/nsp12738D738DgaCgaT33Q.80.000495
ORF1ab/nsp12738D738DgaCgaT220.111111
ORF1ab/nsp12738D738DgaCgaT22A.20.001324
ORF1ab/nsp12738D738DgaCgaT22AY.1160.000574
ORF1ab/nsp12738D738DgaCgaT22AY.120.000632
ORF1ab/nsp12738D738DgaCgaT22AY.1210.000271
ORF1ab/nsp12738D738DgaCgaT22AY.16.10.00094
ORF1ab/nsp12738D738DgaCgaT22AY.270.000129
ORF1ab/nsp12738D738DgaCgaT22AY.29.10.000441
ORF1ab/nsp12738D738DgaCgaT22AY.4.10.001475
ORF1ab/nsp12738D738DgaCgaT22AY.4.50.000215
ORF1ab/nsp12738D738DgaCgaT22AY.5.40.000553
ORF1ab/nsp12738D738DgaCgaT22AY.690.000373
ORF1ab/nsp12738D738DgaCgaT22AY.75.10.000361
ORF1ab/nsp12738D738DgaCgaT22B.1.1.100.00223
ORF1ab/nsp12738D738DgaCgaT22B.1.1.2070.002364
ORF1ab/nsp12738D738DgaCgaT22B.1.1.2160.001781
ORF1ab/nsp12738D738DgaCgaT22B.1.1.2280.006098
ORF1ab/nsp12738D738DgaCgaT22B.1.1.2860.005797
ORF1ab/nsp12738D738DgaCgaT22B.1.1.3060.000877
ORF1ab/nsp12738D738DgaCgaT22B.1.1.3170.000823
ORF1ab/nsp12738D738DgaCgaT22B.1.1.4420.037037
ORF1ab/nsp12738D738DgaCgaT22B.1.110.30.001437
ORF1ab/nsp12738D738DgaCgaT22B.1.1470.001512
ORF1ab/nsp12738D738DgaCgaT22B.1.177.100.001756
ORF1ab/nsp12738D738DgaCgaT22B.1.1890.008584
ORF1ab/nsp12738D738DgaCgaT22B.1.258.100.022727
ORF1ab/nsp12738D738DgaCgaT22B.1.3110.000549
ORF1ab/nsp12738D738DgaCgaT22B.1.36.180.00084
ORF1ab/nsp12738D738DgaCgaT22B.1.36.190.018519
ORF1ab/nsp12738D738DgaCgaT22B.1.3620.003082
ORF1ab/nsp12738D738DgaCgaT22B.1.466.20.000782
ORF1ab/nsp12738D738DgaCgaT22B.1.5770.001375
ORF1ab/nsp12738D738DgaCgaT22B.1.6090.000959
ORF1ab/nsp12738D738DgaCgaT22B.1.6360.013423
ORF1ab/nsp12738D738DgaCgaT22B.400.000729
ORF1ab/nsp12738D738DgaCgaT11A.2.20.001689
ORF1ab/nsp12738D738DgaCgaT11A.23.10.000704
ORF1ab/nsp12738D738DgaCgaT11AD.20.000219
ORF1ab/nsp12738D738DgaCgaT11AE.80.000489
ORF1ab/nsp12738D738DgaCgaT11AY.1080.001103
ORF1ab/nsp12738D738DgaCgaT11AY.116.10.000311
ORF1ab/nsp12738D738DgaCgaT11AY.190.00114
ORF1ab/nsp12738D738DgaCgaT11AY.23.10.000417
ORF1ab/nsp12738D738DgaCgaT11AY.3.10.000085
ORF1ab/nsp12738D738DgaCgaT11AY.400.000964
ORF1ab/nsp12738D738DgaCgaT11AY.450.000122
ORF1ab/nsp12738D738DgaCgaT11AY.46.40.000165
ORF1ab/nsp12738D738DgaCgaT11AY.510.000909
ORF1ab/nsp12738D738DgaCgaT11AY.620.000436
ORF1ab/nsp12738D738DgaCgaT11AY.650.000533
ORF1ab/nsp12738D738DgaCgaT11AY.7.10.000113
ORF1ab/nsp12738D738DgaCgaT11AY.7.20.000559
ORF1ab/nsp12738D738DgaCgaT11AY.710.000475
ORF1ab/nsp12738D738DgaCgaT11AY.720.001361
ORF1ab/nsp12738D738DgaCgaT11AY.740.000116
ORF1ab/nsp12738D738DgaCgaT11AY.780.001541
ORF1ab/nsp12738D738DgaCgaT11AY.840.000437
ORF1ab/nsp12738D738DgaCgaT11AY.850.000427
ORF1ab/nsp12738D738DgaCgaT11AY.900.000684
ORF1ab/nsp12738D738DgaCgaT11AY.930.000273
ORF1ab/nsp12738D738DgaCgaT11AY.950.000761
ORF1ab/nsp12738D738DgaCgaT11AY.990.001049
ORF1ab/nsp12738D738DgaCgaT11B.1.1.1170.009709
ORF1ab/nsp12738D738DgaCgaT11B.1.1.1210.002427
ORF1ab/nsp12738D738DgaCgaT11B.1.1.1380.006061
ORF1ab/nsp12738D738DgaCgaT11B.1.1.1610.003534
ORF1ab/nsp12738D738DgaCgaT11B.1.1.1920.002309
ORF1ab/nsp12738D738DgaCgaT11B.1.1.1960.005714
ORF1ab/nsp12738D738DgaCgaT11B.1.1.2200.001859
ORF1ab/nsp12738D738DgaCgaT11B.1.1.2320.001815
ORF1ab/nsp12738D738DgaCgaT11B.1.1.2410.00207
ORF1ab/nsp12738D738DgaCgaT11B.1.1.250.000569
ORF1ab/nsp12738D738DgaCgaT11B.1.1.2530.002506
ORF1ab/nsp12738D738DgaCgaT11B.1.1.260.005236
ORF1ab/nsp12738D738DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp12738D738DgaCgaT11B.1.1.2910.000742
ORF1ab/nsp12738D738DgaCgaT11B.1.1.2940.001266
ORF1ab/nsp12738D738DgaCgaT11B.1.1.2980.000862
ORF1ab/nsp12738D738DgaCgaT11B.1.1.3090.005848
ORF1ab/nsp12738D738DgaCgaT11B.1.1.310.066667
ORF1ab/nsp12738D738DgaCgaT11B.1.1.3110.000358
ORF1ab/nsp12738D738DgaCgaT11B.1.1.3220.008772
ORF1ab/nsp12738D738DgaCgaT11B.1.1.3690.000446
ORF1ab/nsp12738D738DgaCgaT11B.1.1.370.000193
ORF1ab/nsp12738D738DgaCgaT11B.1.1.4070.041667
ORF1ab/nsp12738D738DgaCgaT11B.1.1.4130.006897
ORF1ab/nsp12738D738DgaCgaT11B.1.1.4160.000905
ORF1ab/nsp12738D738DgaCgaT11B.1.1.4240.045455
ORF1ab/nsp12738D738DgaCgaT11B.1.1.4480.002033
ORF1ab/nsp12738D738DgaCgaT11B.1.1.4640.001473
ORF1ab/nsp12738D738DgaCgaT11B.1.1.510.001718
ORF1ab/nsp12738D738DgaCgaT11B.1.1.5260.003546
ORF1ab/nsp12738D738DgaCgaT11B.1.160.140.002119
ORF1ab/nsp12738D738DgaCgaT11B.1.160.160.000929
ORF1ab/nsp12738D738DgaCgaT11B.1.160.260.002421
ORF1ab/nsp12738D738DgaCgaT11B.1.160.320.004292
ORF1ab/nsp12738D738DgaCgaT11B.1.177.150.000631
ORF1ab/nsp12738D738DgaCgaT11B.1.177.300.002513
ORF1ab/nsp12738D738DgaCgaT11B.1.177.570.000281
ORF1ab/nsp12738D738DgaCgaT11B.1.177.600.000218
ORF1ab/nsp12738D738DgaCgaT11B.1.177.730.000566
ORF1ab/nsp12738D738DgaCgaT11B.1.2100.002132
ORF1ab/nsp12738D738DgaCgaT11B.1.2230.002778
ORF1ab/nsp12738D738DgaCgaT11B.1.2400.000216
ORF1ab/nsp12738D738DgaCgaT11B.1.258.110.000396
ORF1ab/nsp12738D738DgaCgaT11B.1.3500.002933
ORF1ab/nsp12738D738DgaCgaT11B.1.351.30.000876
ORF1ab/nsp12738D738DgaCgaT11B.1.36.220.001208
ORF1ab/nsp12738D738DgaCgaT11B.1.36.380.001642
ORF1ab/nsp12738D738DgaCgaT11B.1.36.80.001
ORF1ab/nsp12738D738DgaCgaT11B.1.3900.010638
ORF1ab/nsp12738D738DgaCgaT11B.1.4130.004255
ORF1ab/nsp12738D738DgaCgaT11B.1.4220.000812
ORF1ab/nsp12738D738DgaCgaT11B.1.4560.003268
ORF1ab/nsp12738D738DgaCgaT11B.1.4710.002732
ORF1ab/nsp12738D738DgaCgaT11B.1.5050.004386
ORF1ab/nsp12738D738DgaCgaT11B.1.5210.004975
ORF1ab/nsp12738D738DgaCgaT11B.1.5240.001406
ORF1ab/nsp12738D738DgaCgaT11B.1.5460.003704
ORF1ab/nsp12738D738DgaCgaT11B.1.5580.004566
ORF1ab/nsp12738D738DgaCgaT11B.1.5650.00081
ORF1ab/nsp12738D738DgaCgaT11B.1.6200.000946
ORF1ab/nsp12738D738DgaCgaT11B.1.621.10.000506
ORF1ab/nsp12738D738DgaCgaT11B.1.670.043478
ORF1ab/nsp12738D738DgaCgaT11B.580.010204
ORF1ab/nsp12738D738DgaCgaT11B.60.00091
ORF1ab/nsp12738D738DgaCgaT11C.320.023256
ORF1ab/nsp12738D738DgaCgaT11C.36.30.000567
ORF1ab/nsp12738D738DgaCgaT11N.40.004255
ORF1ab/nsp12738D738DgaCgaT11P.1.10.000318
ORF1ab/nsp12738D738DgaCgaT11P.1.100.000269
ORF1ab/nsp12738D738DgaCgaT11P.1.20.001156
ORF1ab/nsp12738D738DgaCgaT11P.1.60.001946
ORF1ab/nsp12738D738DgaCgaT11P.30.001595
ORF1ab/nsp12738D738DgaCgaT11P.70.004367
ORF1ab/nsp12738D738DgaCgaT11Q.10.000126
ORF1ab/nsp12738D738DgaCgaT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.