CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 728

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12728Y728YY5120YsyntaTtaC399399115622-15624
ORF1ab/nsp12728Y728delY5120deldelTAT---4242115622-15624
ORF1ab/nsp12728Y728FY5120FnonsyntAttTt77115622-15624
ORF1ab/nsp12728Y728HY5120HnonsynTatCat55115622-15624
ORF1ab/nsp12728Y728SY5120SnonsyntAttCt22115622-15624
ORF1ab/nsp12728Y728del2Y5120del2delTAt--t210.515622-15624
ORF1ab/nsp12728Y728del2Y5120del2delTATC--210.515622-15624
ORF1ab/nsp12728Y728CY5120CnonsyntATtGC11115622-15624
ORF1ab/nsp12728Y728RY5120RnonsynTAtCGt11115622-15624
ORF1ab/nsp12728Y728XY5120XnonsyntaTtaA11115622-15624
ORF1ab/nsp12728Y728LY5120LnonsynTAtCTt11115622-15624

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12728Y728YtaTtaC399399All0.000076
ORF1ab/nsp12728Y728YtaTtaC9494B.1.4230.959184
ORF1ab/nsp12728Y728YtaTtaC8383B.1.1.70.000074
ORF1ab/nsp12728Y728delTAT---4242All0.000008
ORF1ab/nsp12728Y728YtaTtaC3737B.10.000339
ORF1ab/nsp12728Y728YtaTtaC2929AY.40.000045
ORF1ab/nsp12728Y728YtaTtaC2828AY.250.000168
ORF1ab/nsp12728Y728YtaTtaC1414AY.120.10.004494
ORF1ab/nsp12728Y728YtaTtaC1212AY.1030.000075
ORF1ab/nsp12728Y728delTAT---1212B.1.1.70.000011
ORF1ab/nsp12728Y728YtaTtaC1010AY.30.000099
ORF1ab/nsp12728Y728YtaTtaC99AY.440.000055
ORF1ab/nsp12728Y728YtaTtaC99AY.980.000711
ORF1ab/nsp12728Y728YtaTtaC99B.1.617.20.000034
ORF1ab/nsp12728Y728delTAT---880.444444
ORF1ab/nsp12728Y728FtAttTt77All0.000001
ORF1ab/nsp12728Y728YtaTtaC77B.1.2210.000497
ORF1ab/nsp12728Y728HTatCat55All0.000001
ORF1ab/nsp12728Y728YtaTtaC55AY.116.10.001557
ORF1ab/nsp12728Y728YtaTtaC55AY.750.00028
ORF1ab/nsp12728Y728YtaTtaC55P.10.000079
ORF1ab/nsp12728Y728YtaTtaC44AY.430.000018
ORF1ab/nsp12728Y728YtaTtaC44AY.46.40.000658
ORF1ab/nsp12728Y728YtaTtaC33B.1.36.80.003
ORF1ab/nsp12728Y728YtaTtaC33B.1.4040.003906
ORF1ab/nsp12728Y728StAttCt22All0
ORF1ab/nsp12728Y728del2TAt--t12All0
ORF1ab/nsp12728Y728del2TATC--12All0
ORF1ab/nsp12728Y728YtaTtaC22AY.1130.000285
ORF1ab/nsp12728Y728YtaTtaC22AY.160.000759
ORF1ab/nsp12728Y728YtaTtaC22AY.260.000057
ORF1ab/nsp12728Y728delTAT---22AY.40.000003
ORF1ab/nsp12728Y728delTAT---22AY.4.50.000215
ORF1ab/nsp12728Y728YtaTtaC22AY.550.001835
ORF1ab/nsp12728Y728delTAT---22B.10.000018
ORF1ab/nsp12728Y728delTAT---22B.1.10.000036
ORF1ab/nsp12728Y728delTAT---22B.1.1.3110.000716
ORF1ab/nsp12728Y728delTAT---22B.1.1770.000026
ORF1ab/nsp12728Y728YtaTtaC22B.1.2430.000139
ORF1ab/nsp12728Y728YtaTtaC22B.1.5260.000047
ORF1ab/nsp12728Y728delTAT---22B.1.617.20.000008
ORF1ab/nsp12728Y728XtaTtaA11All0
ORF1ab/nsp12728Y728RTAtCGt11All0
ORF1ab/nsp12728Y728CtATtGC11All0
ORF1ab/nsp12728Y728LTAtCTt11All0
ORF1ab/nsp12728Y728YtaTtaC11AY.1170.000085
ORF1ab/nsp12728Y728YtaTtaC11AY.1190.000035
ORF1ab/nsp12728Y728YtaTtaC11AY.1200.000037
ORF1ab/nsp12728Y728YtaTtaC11AY.16.10.00047
ORF1ab/nsp12728Y728FtAttTt11AY.250.000006
ORF1ab/nsp12728Y728FtAttTt11AY.260.000028
ORF1ab/nsp12728Y728del2TATC--11AY.30.00001
ORF1ab/nsp12728Y728delTAT---11AY.430.000004
ORF1ab/nsp12728Y728StAttCt11AY.440.000006
ORF1ab/nsp12728Y728CtATtGC11AY.440.000006
ORF1ab/nsp12728Y728YtaTtaC11AY.50.000021
ORF1ab/nsp12728Y728YtaTtaC11AY.580.000907
ORF1ab/nsp12728Y728RTAtCGt11AY.670.000464
ORF1ab/nsp12728Y728YtaTtaC11AY.75.10.00018
ORF1ab/nsp12728Y728delTAT---11AY.90.000068
ORF1ab/nsp12728Y728YtaTtaC11AY.9.20.000037
ORF1ab/nsp12728Y728FtAttTt11B0.000128
ORF1ab/nsp12728Y728HTatCat11B.10.000009
ORF1ab/nsp12728Y728FtAttTt11B.10.000009
ORF1ab/nsp12728Y728StAttCt11B.10.000009
ORF1ab/nsp12728Y728del2TAt--t11B.10.000009
ORF1ab/nsp12728Y728XtaTtaA11B.1.10.000018
ORF1ab/nsp12728Y728FtAttTt11B.1.10.000018
ORF1ab/nsp12728Y728YtaTtaC11B.1.10.000018
ORF1ab/nsp12728Y728LTAtCTt11B.1.1.3150.008475
ORF1ab/nsp12728Y728HTatCat11B.1.1.390.00051
ORF1ab/nsp12728Y728FtAttTt11B.1.1.70.000001
ORF1ab/nsp12728Y728delTAT---11B.1.1.700.000341
ORF1ab/nsp12728Y728HTatCat11B.1.1600.000031
ORF1ab/nsp12728Y728delTAT---11B.1.177.190.001431
ORF1ab/nsp12728Y728HTatCat11B.1.177.420.000894
ORF1ab/nsp12728Y728delTAT---11B.1.177.510.004566
ORF1ab/nsp12728Y728YtaTtaC11B.1.177.770.000726
ORF1ab/nsp12728Y728delTAT---11B.1.177.870.000728
ORF1ab/nsp12728Y728YtaTtaC11B.1.20.000009
ORF1ab/nsp12728Y728delTAT---11B.1.2580.000067
ORF1ab/nsp12728Y728HTatCat11B.1.2840.013158
ORF1ab/nsp12728Y728YtaTtaC11B.1.3510.00003
ORF1ab/nsp12728Y728YtaTtaC11B.1.3700.008
ORF1ab/nsp12728Y728YtaTtaC11B.1.5880.00091
ORF1ab/nsp12728Y728YtaTtaC11B.1.5950.000261
ORF1ab/nsp12728Y728YtaTtaC11B.1.6210.000089
ORF1ab/nsp12728Y728YtaTtaC11P.1.140.000048
ORF1ab/nsp12728Y728delTAT---11Q.10.000126
ORF1ab/nsp12728Y728FtAttTt11Q.30.000145