CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 713

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12713N713NN5105NsynaaCaaT87968796115577-15579
ORF1ab/nsp12713N713KN5105KnonsynaaCaaA44430.97727315577-15579
ORF1ab/nsp12713N713KN5105KnonsynaaCaaG4410.022727315577-15579
ORF1ab/nsp12713N713IN5105InonsynaAcaTc1919115577-15579
ORF1ab/nsp12713N713SN5105SnonsynaAcaGc1212115577-15579
ORF1ab/nsp12713N713delN5105deldelAAC---1010115577-15579
ORF1ab/nsp12713N713DN5105DnonsynAacGac970.77777815577-15579
ORF1ab/nsp12713N713DN5105DnonsynAaCGaT920.22222215577-15579
ORF1ab/nsp12713N713del2N5105del2delaACa--520.415577-15579
ORF1ab/nsp12713N713del2N5105del2delAAC--T520.415577-15579
ORF1ab/nsp12713N713del2N5105del2delAAc--c510.215577-15579
ORF1ab/nsp12713N713del1N5105del1delAAc-Tc420.515577-15579
ORF1ab/nsp12713N713del1N5105del1delAac-ac420.515577-15579
ORF1ab/nsp12713N713CN5105CnonsynAAcTGc320.66666715577-15579
ORF1ab/nsp12713N713CN5105CnonsynAACTGT310.33333315577-15579
ORF1ab/nsp12713N713RN5105RnonsynaACaGG310.33333315577-15579
ORF1ab/nsp12713N713RN5105RnonsynAAcCGc310.33333315577-15579
ORF1ab/nsp12713N713RN5105RnonsynAACCGG310.33333315577-15579
ORF1ab/nsp12713N713AN5105AnonsynAAcGCc22115577-15579
ORF1ab/nsp12713N713HN5105HnonsynAacCac22115577-15579
ORF1ab/nsp12713N713LN5105LnonsynAACCTG210.515577-15579
ORF1ab/nsp12713N713LN5105LnonsynAAcCTc210.515577-15579
ORF1ab/nsp12713N713TN5105TnonsynaACaCA210.515577-15579
ORF1ab/nsp12713N713TN5105TnonsynaAcaCc210.515577-15579
ORF1ab/nsp12713N713YN5105YnonsynAacTac11115577-15579
ORF1ab/nsp12713N713MN5105MnonsynaACaTG11115577-15579
ORF1ab/nsp12713N713VN5105VnonsynAAcGTc11115577-15579

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12713N713NaaCaaT87968796All0.001682
ORF1ab/nsp12713N713NaaCaaT24642464B.1.617.20.009278
ORF1ab/nsp12713N713NaaCaaT14191419AY.430.006287
ORF1ab/nsp12713N713NaaCaaT12141214B.1.1.70.001087
ORF1ab/nsp12713N713NaaCaaT526526B.1.4741
ORF1ab/nsp12713N713NaaCaaT224224B.1.10.004064
ORF1ab/nsp12713N713NaaCaaT167167AY.40.00026
ORF1ab/nsp12713N713NaaCaaT140140AY.50.002891
ORF1ab/nsp12713N713NaaCaaT132132B.1.2430.009185
ORF1ab/nsp12713N713NaaCaaT131131AY.440.000797
ORF1ab/nsp12713N713NaaCaaT126126B.1.36.330.954545
ORF1ab/nsp12713N713NaaCaaT122122AY.1020.003235
ORF1ab/nsp12713N713NaaCaaT9292AY.1030.000571
ORF1ab/nsp12713N713NaaCaaT8787B.1.20.000766
ORF1ab/nsp12713N713NaaCaaT8686AY.390.002125
ORF1ab/nsp12713N713NaaCaaT7878AY.30.000776
ORF1ab/nsp12713N713NaaCaaT7070AY.250.000421
ORF1ab/nsp12713N713NaaCaaT5656B.10.000513
ORF1ab/nsp12713N713NaaCaaT5454P.1.140.002581
ORF1ab/nsp12713N713NaaCaaT4949P.10.000772
ORF1ab/nsp12713N713NaaCaaT4646B.1.177.40.009709
ORF1ab/nsp12713N713NaaCaaT4545B.1.6210.003983
ORF1ab/nsp12713N713KaaCaaA4344All0.000008
ORF1ab/nsp12713N713KaaCaaG144All0
ORF1ab/nsp12713N713NaaCaaT4040B.1.1.2140.002218
ORF1ab/nsp12713N713NaaCaaT3838AY.39.20.058552
ORF1ab/nsp12713N713NaaCaaT3232B.1.1.5190.001271
ORF1ab/nsp12713N713NaaCaaT3232B.1.3510.000951
ORF1ab/nsp12713N713NaaCaaT3131B.1.4290.000729
ORF1ab/nsp12713N713NaaCaaT3030B.1.177.860.005504
ORF1ab/nsp12713N713NaaCaaT3030C.36.3.10.081522
ORF1ab/nsp12713N713NaaCaaT2929AY.4.20.000629
ORF1ab/nsp12713N713NaaCaaT2929AY.5.40.008024
ORF1ab/nsp12713N713NaaCaaT2828AY.9.20.001028
ORF1ab/nsp12713N713NaaCaaT2828B.1.1.2220.005712
ORF1ab/nsp12713N713NaaCaaT2727AY.190.030787
ORF1ab/nsp12713N713NaaCaaT2727B.1.2740.321429
ORF1ab/nsp12713N713NaaCaaT2626AY.1210.003518
ORF1ab/nsp12713N713NaaCaaT2525AY.260.000708
ORF1ab/nsp12713N713NaaCaaT2323B.1.1.2840.00247
ORF1ab/nsp12713N713NaaCaaT2222AY.1000.001012
ORF1ab/nsp12713N713NaaCaaT2222AY.460.00229
ORF1ab/nsp12713N713NaaCaaT2121AY.920.006033
ORF1ab/nsp12713N713NaaCaaT2121B.1.1770.000277
ORF1ab/nsp12713N713IaAcaTc1919All0.000004
ORF1ab/nsp12713N713NaaCaaT1919B.1.1.2770.014416
ORF1ab/nsp12713N713NaaCaaT1919B.1.1.390.009684
ORF1ab/nsp12713N713NaaCaaT1818AY.1190.000636
ORF1ab/nsp12713N713NaaCaaT1818B.1.1600.000561
ORF1ab/nsp12713N713NaaCaaT1818B.1.5260.000423
ORF1ab/nsp12713N713NaaCaaT1818B.1.5670.06
ORF1ab/nsp12713N713NaaCaaT1717B.1.1.3060.007453
ORF1ab/nsp12713N713NaaCaaT1717B.1.177.820.008115
ORF1ab/nsp12713N713NaaCaaT1717C.370.001973
ORF1ab/nsp12713N713NaaCaaT1616B.1.3610.020619
ORF1ab/nsp12713N713NaaCaaT1515AY.9.10.001256
ORF1ab/nsp12713N713NaaCaaT1515B.1.1.5161
ORF1ab/nsp12713N713NaaCaaT1515B.1.177.600.003277
ORF1ab/nsp12713N713NaaCaaT1414AY.200.000544
ORF1ab/nsp12713N713NaaCaaT1414AY.330.000935
ORF1ab/nsp12713N713NaaCaaT1414B.1.360.002043
ORF1ab/nsp12713N713NaaCaaT1313AY.360.001927
ORF1ab/nsp12713N713NaaCaaT1313B.1.3240.020867
ORF1ab/nsp12713N713SaAcaGc1212All0.000002
ORF1ab/nsp12713N713NaaCaaT1212AY.1180.000752
ORF1ab/nsp12713N713NaaCaaT1212B.1.1.5120.342857
ORF1ab/nsp12713N713IaAcaTc1212B.1.1.5190.000477
ORF1ab/nsp12713N713NaaCaaT1212B.1.2580.000799
ORF1ab/nsp12713N713NaaCaaT1111AY.1110.002015
ORF1ab/nsp12713N713NaaCaaT1111AY.60.000452
ORF1ab/nsp12713N713NaaCaaT1111AY.7.10.00124
ORF1ab/nsp12713N713NaaCaaT1111B.1.2400.002371
ORF1ab/nsp12713N713NaaCaaT1111C.160.011665
ORF1ab/nsp12713N713delAAC---1010All0.000002
ORF1ab/nsp12713N713KaaCaaA1010AY.40.000016
ORF1ab/nsp12713N713NaaCaaT1010AY.46.30.009337
ORF1ab/nsp12713N713NaaCaaT1010B.1.1640.149254
ORF1ab/nsp12713N713NaaCaaT1010B.1.6370.000731
ORF1ab/nsp12713N713DAacGac79All0.000001
ORF1ab/nsp12713N713DAaCGaT29All0
ORF1ab/nsp12713N713NaaCaaT99AY.450.001095
ORF1ab/nsp12713N713NaaCaaT99AY.750.000504
ORF1ab/nsp12713N713NaaCaaT99AY.840.003937
ORF1ab/nsp12713N713NaaCaaT88AY.1170.000676
ORF1ab/nsp12713N713NaaCaaT88AY.870.006661
ORF1ab/nsp12713N713NaaCaaT88AY.880.007073
ORF1ab/nsp12713N713NaaCaaT88B.1.1.3480.006369
ORF1ab/nsp12713N713NaaCaaT88B.1.1.3560.068376
ORF1ab/nsp12713N713NaaCaaT88B.1.1.4090.022663
ORF1ab/nsp12713N713NaaCaaT77AY.116.10.00218
ORF1ab/nsp12713N713NaaCaaT77AY.75.10.001262
ORF1ab/nsp12713N713NaaCaaT77B.1.1.1480.061404
ORF1ab/nsp12713N713NaaCaaT77B.1.177.70.001154
ORF1ab/nsp12713N713NaaCaaT77B.1.2210.000497
ORF1ab/nsp12713N713NaaCaaT77B.1.5610.002779
ORF1ab/nsp12713N713NaaCaaT77B.1.5960.00061
ORF1ab/nsp12713N713NaaCaaT77C.140.030303
ORF1ab/nsp12713N713NaaCaaT77P.20.001306
ORF1ab/nsp12713N713NaaCaaT66AY.420.000241
ORF1ab/nsp12713N713NaaCaaT66B.1.36.290.003104
ORF1ab/nsp12713N713NaaCaaT66Q.10.000758
ORF1ab/nsp12713N713NaaCaaT66Q.30.00087
ORF1ab/nsp12713N713NaaCaaT66Q.80.000989
ORF1ab/nsp12713N713NaaCaaT55A.50.009615
ORF1ab/nsp12713N713del2aACa--25All0
ORF1ab/nsp12713N713del2AAC--T25All0
ORF1ab/nsp12713N713del2AAc--c15All0
ORF1ab/nsp12713N713NaaCaaT55AY.1090.003698
ORF1ab/nsp12713N713NaaCaaT55AY.290.000079
ORF1ab/nsp12713N713NaaCaaT55AY.80.00303
ORF1ab/nsp12713N713NaaCaaT55AY.930.001365
ORF1ab/nsp12713N713NaaCaaT55B.1.1.500.003394
ORF1ab/nsp12713N713NaaCaaT55B.1.177.320.006748
ORF1ab/nsp12713N713NaaCaaT55B.1.3690.001426
ORF1ab/nsp12713N713NaaCaaT55B.1.4270.000252
ORF1ab/nsp12713N713NaaCaaT55B.1.5490.035971
ORF1ab/nsp12713N713NaaCaaT55B.1.6090.002397
ORF1ab/nsp12713N713NaaCaaT55D.20.000375
ORF1ab/nsp12713N713NaaCaaT55P.1.170.000809
ORF1ab/nsp12713N713del1Aac-ac24All0
ORF1ab/nsp12713N713del1AAc-Tc24All0
ORF1ab/nsp12713N713NaaCaaT44AY.130.000644
ORF1ab/nsp12713N713NaaCaaT44AY.230.000279
ORF1ab/nsp12713N713KaaCaaA44AY.4.20.000087
ORF1ab/nsp12713N713NaaCaaT44AY.470.000124
ORF1ab/nsp12713N713NaaCaaT44AY.610.000419
ORF1ab/nsp12713N713NaaCaaT44AY.640.002381
ORF1ab/nsp12713N713NaaCaaT44AY.820.005427
ORF1ab/nsp12713N713NaaCaaT44AY.980.000316
ORF1ab/nsp12713N713NaaCaaT44AY.98.10.000194
ORF1ab/nsp12713N713KaaCaaA44B.1.1.70.000004
ORF1ab/nsp12713N713NaaCaaT44B.1.2340.000528
ORF1ab/nsp12713N713NaaCaaT44B.1.4990.004202
ORF1ab/nsp12713N713NaaCaaT44B.1.617.10.000516
ORF1ab/nsp12713N713CAAcTGc23All0
ORF1ab/nsp12713N713RaACaGG13All0
ORF1ab/nsp12713N713CAACTGT13All0
ORF1ab/nsp12713N713RAAcCGc13All0
ORF1ab/nsp12713N713RAACCGG13All0
ORF1ab/nsp12713N713NaaCaaT33AY.100.00159
ORF1ab/nsp12713N713NaaCaaT33AY.1060.001005
ORF1ab/nsp12713N713NaaCaaT33AY.140.000264
ORF1ab/nsp12713N713NaaCaaT33AY.150.006667
ORF1ab/nsp12713N713NaaCaaT33AY.300.001187
ORF1ab/nsp12713N713KaaCaaA33AY.330.0002
ORF1ab/nsp12713N713NaaCaaT33AY.34.10.00153
ORF1ab/nsp12713N713RAAcCGc13AY.440.000006
ORF1ab/nsp12713N713RaACaGG13AY.440.000006
ORF1ab/nsp12713N713RAACCGG13AY.440.000006
ORF1ab/nsp12713N713NaaCaaT33AY.46.40.000494
ORF1ab/nsp12713N713NaaCaaT33AY.5.20.007389
ORF1ab/nsp12713N713NaaCaaT33AY.580.002722
ORF1ab/nsp12713N713NaaCaaT33AY.590.001589
ORF1ab/nsp12713N713KaaCaaA33B.10.000027
ORF1ab/nsp12713N713NaaCaaT33B.1.1.10.00098
ORF1ab/nsp12713N713NaaCaaT33B.1.1.1760.001318
ORF1ab/nsp12713N713NaaCaaT33B.1.1.2160.002671
ORF1ab/nsp12713N713NaaCaaT33B.1.1.3440.032258
ORF1ab/nsp12713N713NaaCaaT33B.1.1.370.000579
ORF1ab/nsp12713N713NaaCaaT33B.1.1.4330.004274
ORF1ab/nsp12713N713NaaCaaT33B.1.1.5260.010638
ORF1ab/nsp12713N713delAAC---33B.1.1.70.000003
ORF1ab/nsp12713N713NaaCaaT33B.1.1470.002268
ORF1ab/nsp12713N713NaaCaaT33B.1.177.650.001996
ORF1ab/nsp12713N713NaaCaaT33B.1.5800.012195
ORF1ab/nsp12713N713NaaCaaT33B.1.5950.000783
ORF1ab/nsp12713N713NaaCaaT33B.1.621.10.001517
ORF1ab/nsp12713N713NaaCaaT33R.10.00027
ORF1ab/nsp12713N713DAaCGaT220.111111
ORF1ab/nsp12713N713CAAcTGc220.111111
ORF1ab/nsp12713N713del2AAC--T220.111111
ORF1ab/nsp12713N713del1AAc-Tc220.111111
ORF1ab/nsp12713N713NaaCaaT22A.2.50.000998
ORF1ab/nsp12713N713NaaCaaT22AD.20.000438
ORF1ab/nsp12713N713AAAcGCc22All0
ORF1ab/nsp12713N713HAacCac22All0
ORF1ab/nsp12713N713TaAcaCc12All0
ORF1ab/nsp12713N713TaACaCA12All0
ORF1ab/nsp12713N713LAAcCTc12All0
ORF1ab/nsp12713N713LAACCTG12All0
ORF1ab/nsp12713N713NaaCaaT22AY.1130.000285
ORF1ab/nsp12713N713NaaCaaT22AY.1160.000574
ORF1ab/nsp12713N713NaaCaaT22AY.1200.000074
ORF1ab/nsp12713N713NaaCaaT22AY.160.000759
ORF1ab/nsp12713N713NaaCaaT22AY.16.10.00094
ORF1ab/nsp12713N713NaaCaaT22AY.3.10.000171
ORF1ab/nsp12713N713KaaCaaA22AY.390.000049
ORF1ab/nsp12713N713NaaCaaT22AY.39.10.000079
ORF1ab/nsp12713N713NaaCaaT22AY.4.30.001684
ORF1ab/nsp12713N713KaaCaaA22AY.440.000012
ORF1ab/nsp12713N713SaAcaGc22AY.440.000012
ORF1ab/nsp12713N713LAACCTG12AY.440.000006
ORF1ab/nsp12713N713LAAcCTc12AY.440.000006
ORF1ab/nsp12713N713NaaCaaT22AY.5.30.000675
ORF1ab/nsp12713N713NaaCaaT22AY.670.000929
ORF1ab/nsp12713N713NaaCaaT22AY.740.000231
ORF1ab/nsp12713N713NaaCaaT22AY.780.003082
ORF1ab/nsp12713N713KaaCaaG12AY.850.000427
ORF1ab/nsp12713N713KaaCaaA12AY.850.000427
ORF1ab/nsp12713N713NaaCaaT22AY.950.001522
ORF1ab/nsp12713N713NaaCaaT22AY.99.10.003106
ORF1ab/nsp12713N713NaaCaaT22AY.99.20.000184
ORF1ab/nsp12713N713NaaCaaT22AZ.50.007018
ORF1ab/nsp12713N713NaaCaaT22B.1.1.1170.019417
ORF1ab/nsp12713N713NaaCaaT22B.1.1.1610.007067
ORF1ab/nsp12713N713NaaCaaT22B.1.1.2070.002364
ORF1ab/nsp12713N713NaaCaaT22B.1.1.280.000622
ORF1ab/nsp12713N713NaaCaaT22B.1.1.3170.000823
ORF1ab/nsp12713N713NaaCaaT22B.1.1.3700.025316
ORF1ab/nsp12713N713NaaCaaT22B.1.1.4130.013793
ORF1ab/nsp12713N713NaaCaaT22B.1.1.4200.002012
ORF1ab/nsp12713N713IaAcaTc22B.1.1.70.000002
ORF1ab/nsp12713N713NaaCaaT22B.1.1.980.037037
ORF1ab/nsp12713N713NaaCaaT22B.1.1700.008621
ORF1ab/nsp12713N713NaaCaaT22B.1.177.440.001038
ORF1ab/nsp12713N713NaaCaaT22B.1.177.450.000762
ORF1ab/nsp12713N713NaaCaaT22B.1.2100.004264
ORF1ab/nsp12713N713NaaCaaT22B.1.258.170.000208
ORF1ab/nsp12713N713NaaCaaT22B.1.351.30.001753
ORF1ab/nsp12713N713NaaCaaT22B.1.4360.002058
ORF1ab/nsp12713N713NaaCaaT22B.1.438.10.000215
ORF1ab/nsp12713N713NaaCaaT22B.1.4800.004975
ORF1ab/nsp12713N713DAacGac22B.1.617.20.000008
ORF1ab/nsp12713N713KaaCaaA22B.1.617.20.000008
ORF1ab/nsp12713N713NaaCaaT22Q.20.001227
ORF1ab/nsp12713N713YAacTac110.055556
ORF1ab/nsp12713N713NaaCaaT11A0.000387
ORF1ab/nsp12713N713YAacTac11All0
ORF1ab/nsp12713N713MaACaTG11All0
ORF1ab/nsp12713N713VAAcGTc11All0
ORF1ab/nsp12713N713KaaCaaA11AY.1000.000046
ORF1ab/nsp12713N713KaaCaaA11AY.1030.000006
ORF1ab/nsp12713N713CAACTGT11AY.1030.000006
ORF1ab/nsp12713N713TaACaCA11AY.1030.000006
ORF1ab/nsp12713N713NaaCaaT11AY.1100.000113
ORF1ab/nsp12713N713NaaCaaT11AY.1140.000231
ORF1ab/nsp12713N713KaaCaaA11AY.1180.000063
ORF1ab/nsp12713N713DAacGac11AY.200.000039
ORF1ab/nsp12713N713NaaCaaT11AY.240.000431
ORF1ab/nsp12713N713DAacGac11AY.250.000006
ORF1ab/nsp12713N713KaaCaaA11AY.30.00001
ORF1ab/nsp12713N713AAAcGCc11AY.30.00001
ORF1ab/nsp12713N713NaaCaaT11AY.340.000097
ORF1ab/nsp12713N713NaaCaaT11AY.370.000316
ORF1ab/nsp12713N713NaaCaaT11AY.380.000499
ORF1ab/nsp12713N713SaAcaGc11AY.390.000025
ORF1ab/nsp12713N713TaAcaCc11AY.40.000002
ORF1ab/nsp12713N713NaaCaaT11AY.4.2.10.000149
ORF1ab/nsp12713N713NaaCaaT11AY.4.50.000107
ORF1ab/nsp12713N713delAAC---11AY.4.50.000107
ORF1ab/nsp12713N713DAacGac11AY.430.000004
ORF1ab/nsp12713N713AAAcGCc11AY.430.000004
ORF1ab/nsp12713N713KaaCaaA11AY.430.000004
ORF1ab/nsp12713N713IaAcaTc11AY.430.000004
ORF1ab/nsp12713N713IaAcaTc11AY.440.000006
ORF1ab/nsp12713N713MaACaTG11AY.440.000006
ORF1ab/nsp12713N713NaaCaaT11AY.46.10.001027
ORF1ab/nsp12713N713NaaCaaT11AY.46.20.000635
ORF1ab/nsp12713N713NaaCaaT11AY.46.60.000072
ORF1ab/nsp12713N713NaaCaaT11AY.550.000917
ORF1ab/nsp12713N713NaaCaaT11AY.620.000436
ORF1ab/nsp12713N713delAAC---11AY.670.000464
ORF1ab/nsp12713N713NaaCaaT11AY.690.000187
ORF1ab/nsp12713N713NaaCaaT11AY.700.000209
ORF1ab/nsp12713N713NaaCaaT11AY.730.000665
ORF1ab/nsp12713N713NaaCaaT11AY.850.000427
ORF1ab/nsp12713N713NaaCaaT11AY.860.00083
ORF1ab/nsp12713N713KaaCaaA11AY.9.20.000037
ORF1ab/nsp12713N713NaaCaaT11AY.910.00073
ORF1ab/nsp12713N713NaaCaaT11AY.940.000443
ORF1ab/nsp12713N713NaaCaaT11AY.960.002075
ORF1ab/nsp12713N713NaaCaaT11AY.990.001049
ORF1ab/nsp12713N713NaaCaaT11B0.000128
ORF1ab/nsp12713N713SaAcaGc11B.10.000009
ORF1ab/nsp12713N713del2aACa--11B.10.000009
ORF1ab/nsp12713N713SaAcaGc11B.1.10.000018
ORF1ab/nsp12713N713IaAcaTc11B.1.10.000018
ORF1ab/nsp12713N713DAacGac11B.1.10.000018
ORF1ab/nsp12713N713NaaCaaT11B.1.1.1210.002427
ORF1ab/nsp12713N713NaaCaaT11B.1.1.1410.002012
ORF1ab/nsp12713N713NaaCaaT11B.1.1.2430.004082
ORF1ab/nsp12713N713NaaCaaT11B.1.1.250.000569
ORF1ab/nsp12713N713SaAcaGc11B.1.1.2630.001558
ORF1ab/nsp12713N713NaaCaaT11B.1.1.2790.001121
ORF1ab/nsp12713N713NaaCaaT11B.1.1.2940.001266
ORF1ab/nsp12713N713NaaCaaT11B.1.1.3010.001179
ORF1ab/nsp12713N713delAAC---11B.1.1.3110.000358
ORF1ab/nsp12713N713NaaCaaT11B.1.1.3120.001912
ORF1ab/nsp12713N713HAacCac11B.1.1.3150.008475
ORF1ab/nsp12713N713NaaCaaT11B.1.1.3360.016667
ORF1ab/nsp12713N713KaaCaaA11B.1.1.3480.000796
ORF1ab/nsp12713N713NaaCaaT11B.1.1.3540.004386
ORF1ab/nsp12713N713NaaCaaT11B.1.1.3590.027778
ORF1ab/nsp12713N713NaaCaaT11B.1.1.4820.023256
ORF1ab/nsp12713N713SaAcaGc11B.1.1.500.000679
ORF1ab/nsp12713N713NaaCaaT11B.1.1.890.006061
ORF1ab/nsp12713N713NaaCaaT11B.1.1260.001276
ORF1ab/nsp12713N713VAAcGTc11B.1.1280.000635
ORF1ab/nsp12713N713IaAcaTc11B.1.1280.000635
ORF1ab/nsp12713N713DAacGac11B.1.1280.000635
ORF1ab/nsp12713N713SaAcaGc11B.1.1770.000013
ORF1ab/nsp12713N713NaaCaaT11B.1.177.120.000152
ORF1ab/nsp12713N713NaaCaaT11B.1.177.160.000664
ORF1ab/nsp12713N713NaaCaaT11B.1.177.170.000821
ORF1ab/nsp12713N713delAAC---11B.1.177.190.001431
ORF1ab/nsp12713N713NaaCaaT11B.1.177.570.000281
ORF1ab/nsp12713N713NaaCaaT11B.1.177.580.001332
ORF1ab/nsp12713N713NaaCaaT11B.1.177.730.000566
ORF1ab/nsp12713N713NaaCaaT11B.1.177.750.001041
ORF1ab/nsp12713N713SaAcaGc11B.1.20.000009
ORF1ab/nsp12713N713KaaCaaA11B.1.20.000009
ORF1ab/nsp12713N713HAacCac11B.1.20.000009
ORF1ab/nsp12713N713NaaCaaT11B.1.2410.000812
ORF1ab/nsp12713N713delAAC---11B.1.2580.000067
ORF1ab/nsp12713N713NaaCaaT11B.1.2800.007143
ORF1ab/nsp12713N713NaaCaaT11B.1.3190.003049
ORF1ab/nsp12713N713NaaCaaT11B.1.3360.002439
ORF1ab/nsp12713N713NaaCaaT11B.1.3480.018182
ORF1ab/nsp12713N713NaaCaaT11B.1.3500.002933
ORF1ab/nsp12713N713KaaCaaA11B.1.3510.00003
ORF1ab/nsp12713N713NaaCaaT11B.1.351.20.000303
ORF1ab/nsp12713N713NaaCaaT11B.1.36.170.000494
ORF1ab/nsp12713N713NaaCaaT11B.1.36.180.00042
ORF1ab/nsp12713N713NaaCaaT11B.1.36.390.002217
ORF1ab/nsp12713N713KaaCaaA11B.1.36.80.001
ORF1ab/nsp12713N713NaaCaaT11B.1.390.003906
ORF1ab/nsp12713N713NaaCaaT11B.1.4160.001269
ORF1ab/nsp12713N713IaAcaTc11B.1.4270.00005
ORF1ab/nsp12713N713SaAcaGc11B.1.4270.00005
ORF1ab/nsp12713N713KaaCaaA11B.1.4290.000024
ORF1ab/nsp12713N713NaaCaaT11B.1.4590.004082
ORF1ab/nsp12713N713SaAcaGc11B.1.4970.000315
ORF1ab/nsp12713N713NaaCaaT11B.1.5030.002488
ORF1ab/nsp12713N713NaaCaaT11B.1.5250.000113
ORF1ab/nsp12713N713NaaCaaT11B.1.5460.003704
ORF1ab/nsp12713N713NaaCaaT11B.1.5650.00081
ORF1ab/nsp12713N713NaaCaaT11B.1.5680.001111
ORF1ab/nsp12713N713NaaCaaT11B.1.5760.000907
ORF1ab/nsp12713N713NaaCaaT11B.1.5770.000687
ORF1ab/nsp12713N713delAAC---11B.1.5930.01087
ORF1ab/nsp12713N713NaaCaaT11B.1.595.40.007299
ORF1ab/nsp12713N713del1Aac-ac11B.1.5960.000087
ORF1ab/nsp12713N713SaAcaGc11B.1.5960.000087
ORF1ab/nsp12713N713NaaCaaT11B.1.6120.002653
ORF1ab/nsp12713N713del1Aac-ac11B.1.617.20.000004
ORF1ab/nsp12713N713del2AAc--c11B.1.617.20.000004
ORF1ab/nsp12713N713KaaCaaA11B.1.6370.000073
ORF1ab/nsp12713N713NaaCaaT11B.6.60.000889
ORF1ab/nsp12713N713NaaCaaT11C.350.000774
ORF1ab/nsp12713N713NaaCaaT11C.360.000911
ORF1ab/nsp12713N713NaaCaaT11C.36.30.000567
ORF1ab/nsp12713N713del2aACa--11D.20.000075
ORF1ab/nsp12713N713NaaCaaT11N.60.007092
ORF1ab/nsp12713N713NaaCaaT11P.1.120.000484
ORF1ab/nsp12713N713NaaCaaT11P.1.17.10.000875
ORF1ab/nsp12713N713NaaCaaT11P.1.20.001156
ORF1ab/nsp12713N713delAAC---11Q.10.000126
ORF1ab/nsp12713N713NaaCaaT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.