CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 709

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12709S709SS5101SsyntcTtcC7427340.98921815565-15567
ORF1ab/nsp12709S709SS5101SsyntcTtcA74250.0067385415565-15567
ORF1ab/nsp12709S709SS5101SsyntcTtcG74230.0040431315565-15567
ORF1ab/nsp12709S709AS5101AnonsynTctGct8484115565-15567
ORF1ab/nsp12709S709YS5101YnonsyntCttAt28260.92857115565-15567
ORF1ab/nsp12709S709YS5101YnonsyntCTtAC2820.071428615565-15567
ORF1ab/nsp12709S709PS5101PnonsynTctCct19140.73684215565-15567
ORF1ab/nsp12709S709PS5101PnonsynTcTCcC1930.15789515565-15567
ORF1ab/nsp12709S709PS5101PnonsynTcTCcA1920.10526315565-15567
ORF1ab/nsp12709S709FS5101FnonsyntCttTt1717115565-15567
ORF1ab/nsp12709S709delS5101deldelTCT---99115565-15567
ORF1ab/nsp12709S709TS5101TnonsynTctAct66115565-15567
ORF1ab/nsp12709S709HS5101HnonsynTCTCAC66115565-15567
ORF1ab/nsp12709S709GS5101GnonsynTCtGGt33115565-15567
ORF1ab/nsp12709S709CS5101CnonsyntCTtGC210.515565-15567
ORF1ab/nsp12709S709CS5101CnonsyntCttGt210.515565-15567
ORF1ab/nsp12709S709LS5101LnonsynTCtCTt11115565-15567
ORF1ab/nsp12709S709RS5101RnonsynTCtCGt11115565-15567
ORF1ab/nsp12709S709VS5101VnonsynTCTGTA11115565-15567
ORF1ab/nsp12709S709XS5101XnonsyntCTtAA11115565-15567
ORF1ab/nsp12709S709QS5101QnonsynTCTCAA11115565-15567

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12709S709StcTtcC734742All0.00014
ORF1ab/nsp12709S709StcTtcA5742All0.000001
ORF1ab/nsp12709S709StcTtcG3742All0.000001
ORF1ab/nsp12709S709StcTtcC487487B.1.1.70.000436
ORF1ab/nsp12709S709StcTtcC9090B.1.5930.978261
ORF1ab/nsp12709S709ATctGct8484All0.000016
ORF1ab/nsp12709S709ATctGct3737B.1.1.70.000033
ORF1ab/nsp12709S709YtCttAt2628All0.000005
ORF1ab/nsp12709S709YtCTtAC228All0
ORF1ab/nsp12709S709StcTtcC2020AY.430.000089
ORF1ab/nsp12709S709PTctCct1419All0.000003
ORF1ab/nsp12709S709PTcTCcC319All0.000001
ORF1ab/nsp12709S709PTcTCcA219All0
ORF1ab/nsp12709S709StcTtcC1919B.1.5950.004958
ORF1ab/nsp12709S709StcTtcC1919B.1.617.20.000072
ORF1ab/nsp12709S709FtCttTt1717All0.000003
ORF1ab/nsp12709S709ATctGct1414B.1.20.000123
ORF1ab/nsp12709S709StcTtcC1111B.1.2430.000765
ORF1ab/nsp12709S709StcTtcC910AY.40.000014
ORF1ab/nsp12709S709StcTtcG110AY.40.000002
ORF1ab/nsp12709S709YtCttAt910AY.850.003845
ORF1ab/nsp12709S709YtCTtAC110AY.850.000427
ORF1ab/nsp12709S709delTCT---99All0.000002
ORF1ab/nsp12709S709StcTtcC68B.10.000055
ORF1ab/nsp12709S709StcTtcA28B.10.000018
ORF1ab/nsp12709S709StcTtcC77B.1.1.1690.127273
ORF1ab/nsp12709S709TTctAct66All0.000001
ORF1ab/nsp12709S709HTCTCAC66All0.000001
ORF1ab/nsp12709S709TTctAct66AY.250.000036
ORF1ab/nsp12709S709FtCttTt55B.10.000046
ORF1ab/nsp12709S709ATctGct44AY.1020.000106
ORF1ab/nsp12709S709ATctGct44AY.40.000006
ORF1ab/nsp12709S709StcTtcC44B.1.4290.000094
ORF1ab/nsp12709S709ATctGct44B.1.617.20.000015
ORF1ab/nsp12709S709GTCtGGt33All0.000001
ORF1ab/nsp12709S709StcTtcC33AY.1180.000188
ORF1ab/nsp12709S709StcTtcC33AY.1200.000112
ORF1ab/nsp12709S709StcTtcC33AY.440.000018
ORF1ab/nsp12709S709StcTtcC33AY.60.000123
ORF1ab/nsp12709S709PTctCct13AY.840.000437
ORF1ab/nsp12709S709PTcTCcA13AY.840.000437
ORF1ab/nsp12709S709PTcTCcC13AY.840.000437
ORF1ab/nsp12709S709YtCttAt23B.10.000018
ORF1ab/nsp12709S709YtCTtAC13B.10.000009
ORF1ab/nsp12709S709PTcTCcA13B.10.000009
ORF1ab/nsp12709S709PTctCct13B.10.000009
ORF1ab/nsp12709S709PTcTCcC13B.10.000009
ORF1ab/nsp12709S709StcTtcC33B.1.1.1570.00274
ORF1ab/nsp12709S709delTCT---33B.1.1.70.000003
ORF1ab/nsp12709S709StcTtcC33B.1.20.000026
ORF1ab/nsp12709S709ATctGct33P.10.000047
ORF1ab/nsp12709S709StcTtcC33P.1.10.000953
ORF1ab/nsp12709S709PTctCct220.111111
ORF1ab/nsp12709S709GTCtGGt220.111111
ORF1ab/nsp12709S709ATctGct220.111111
ORF1ab/nsp12709S709CtCttGt12All0
ORF1ab/nsp12709S709CtCTtGC12All0
ORF1ab/nsp12709S709StcTtcC22AY.1000.000092
ORF1ab/nsp12709S709StcTtcC22AY.1020.000053
ORF1ab/nsp12709S709StcTtcC22AY.1030.000012
ORF1ab/nsp12709S709ATctGct22AY.1030.000012
ORF1ab/nsp12709S709StcTtcC22AY.250.000012
ORF1ab/nsp12709S709StcTtcC22AY.30.00002
ORF1ab/nsp12709S709FtCttTt22AY.40.000003
ORF1ab/nsp12709S709PTctCct22AY.40.000003
ORF1ab/nsp12709S709HTCTCAC22AY.430.000009
ORF1ab/nsp12709S709StcTtcC12AY.840.000437
ORF1ab/nsp12709S709StcTtcA12AY.840.000437
ORF1ab/nsp12709S709PTcTCcC12AY.990.001049
ORF1ab/nsp12709S709PTctCct12AY.990.001049
ORF1ab/nsp12709S709StcTtcC22B.1.10.000036
ORF1ab/nsp12709S709StcTtcC22B.1.1.3370.007194
ORF1ab/nsp12709S709FtCttTt22B.1.20.000018
ORF1ab/nsp12709S709StcTtcA12B.1.2580.000067
ORF1ab/nsp12709S709StcTtcC12B.1.2580.000067
ORF1ab/nsp12709S709StcTtcC22B.1.5260.000047
ORF1ab/nsp12709S709StcTtcC22P.10.000032
ORF1ab/nsp12709S709RTCtCGt11All0
ORF1ab/nsp12709S709VTCTGTA11All0
ORF1ab/nsp12709S709XtCTtAA11All0
ORF1ab/nsp12709S709QTCTCAA11All0
ORF1ab/nsp12709S709LTCtCTt11All0
ORF1ab/nsp12709S709FtCttTt11AY.1000.000046
ORF1ab/nsp12709S709YtCttAt11AY.1030.000006
ORF1ab/nsp12709S709FtCttTt11AY.1030.000006
ORF1ab/nsp12709S709YtCttAt11AY.1190.000035
ORF1ab/nsp12709S709StcTtcC11AY.1190.000035
ORF1ab/nsp12709S709ATctGct11AY.140.000088
ORF1ab/nsp12709S709ATctGct11AY.16.10.00047
ORF1ab/nsp12709S709StcTtcC11AY.230.00007
ORF1ab/nsp12709S709StcTtcC11AY.260.000028
ORF1ab/nsp12709S709ATctGct11AY.260.000028
ORF1ab/nsp12709S709HTCTCAC11AY.30.00001
ORF1ab/nsp12709S709StcTtcC11AY.3.10.000085
ORF1ab/nsp12709S709VTCTGTA11AY.300.000396
ORF1ab/nsp12709S709YtCttAt11AY.300.000396
ORF1ab/nsp12709S709StcTtcC11AY.330.000067
ORF1ab/nsp12709S709YtCttAt11AY.340.000097
ORF1ab/nsp12709S709StcTtcC11AY.340.000097
ORF1ab/nsp12709S709ATctGct11AY.350.000233
ORF1ab/nsp12709S709PTctCct11AY.390.000025
ORF1ab/nsp12709S709StcTtcC11AY.390.000025
ORF1ab/nsp12709S709YtCttAt11AY.390.000025
ORF1ab/nsp12709S709ATctGct11AY.390.000025
ORF1ab/nsp12709S709YtCttAt11AY.39.10.00004
ORF1ab/nsp12709S709StcTtcC11AY.4.50.000107
ORF1ab/nsp12709S709delTCT---11AY.4.50.000107
ORF1ab/nsp12709S709StcTtcC11AY.420.00004
ORF1ab/nsp12709S709PTctCct11AY.430.000004
ORF1ab/nsp12709S709ATctGct11AY.430.000004
ORF1ab/nsp12709S709HTCTCAC11AY.440.000006
ORF1ab/nsp12709S709PTctCct11AY.440.000006
ORF1ab/nsp12709S709YtCttAt11AY.470.000031
ORF1ab/nsp12709S709StcTtcC11AY.480.000465
ORF1ab/nsp12709S709FtCttTt11AY.50.000021
ORF1ab/nsp12709S709YtCttAt11AY.50.000021
ORF1ab/nsp12709S709StcTtcC11AY.5.40.000277
ORF1ab/nsp12709S709YtCttAt11AY.60.000041
ORF1ab/nsp12709S709StcTtcC11AY.640.000595
ORF1ab/nsp12709S709HTCTCAC11AY.670.000464
ORF1ab/nsp12709S709StcTtcC11AY.720.001361
ORF1ab/nsp12709S709ATctGct11AY.750.000056
ORF1ab/nsp12709S709YtCttAt11AY.790.001211
ORF1ab/nsp12709S709RTCtCGt11AY.850.000427
ORF1ab/nsp12709S709StcTtcC11AY.990.001049
ORF1ab/nsp12709S709HTCTCAC11B.10.000009
ORF1ab/nsp12709S709XtCTtAA11B.10.000009
ORF1ab/nsp12709S709QTCTCAA11B.10.000009
ORF1ab/nsp12709S709CtCTtGC11B.1.10.000018
ORF1ab/nsp12709S709FtCttTt11B.1.10.000018
ORF1ab/nsp12709S709StcTtcC11B.1.1.2140.000055
ORF1ab/nsp12709S709YtCttAt11B.1.1.2220.000204
ORF1ab/nsp12709S709PTctCct11B.1.1.3060.000438
ORF1ab/nsp12709S709delTCT---11B.1.1.3110.000358
ORF1ab/nsp12709S709GTCtGGt11B.1.1.3260.001761
ORF1ab/nsp12709S709ATctGct11B.1.1.3260.001761
ORF1ab/nsp12709S709CtCttGt11B.1.1.3260.001761
ORF1ab/nsp12709S709ATctGct11B.1.1.370.000193
ORF1ab/nsp12709S709ATctGct11B.1.1.4180.022727
ORF1ab/nsp12709S709ATctGct11B.1.1.4290.004608
ORF1ab/nsp12709S709ATctGct11B.1.1.440.00241
ORF1ab/nsp12709S709YtCttAt11B.1.1.70.000001
ORF1ab/nsp12709S709StcTtcC11B.1.110.30.000718
ORF1ab/nsp12709S709StcTtcC11B.1.1570.002985
ORF1ab/nsp12709S709StcTtcC11B.1.177.120.000152
ORF1ab/nsp12709S709delTCT---11B.1.177.190.001431
ORF1ab/nsp12709S709YtCttAt11B.1.20.000009
ORF1ab/nsp12709S709StcTtcG11B.1.2320.000537
ORF1ab/nsp12709S709delTCT---11B.1.2580.000067
ORF1ab/nsp12709S709delTCT---11B.1.3110.000275
ORF1ab/nsp12709S709FtCttTt11B.1.36.100.004785
ORF1ab/nsp12709S709FtCttTt11B.1.3690.000285
ORF1ab/nsp12709S709StcTtcA11B.1.3980.002976
ORF1ab/nsp12709S709ATctGct11B.1.4270.00005
ORF1ab/nsp12709S709FtCttTt11B.1.4320.011236
ORF1ab/nsp12709S709StcTtcG11B.1.4970.000315
ORF1ab/nsp12709S709delTCT---11B.1.5930.01087
ORF1ab/nsp12709S709FtCttTt11B.1.5960.000087
ORF1ab/nsp12709S709StcTtcC11B.1.5960.000087
ORF1ab/nsp12709S709PTctCct11B.1.6120.002653
ORF1ab/nsp12709S709LTCtCTt11B.1.617.20.000004
ORF1ab/nsp12709S709YtCttAt11B.1.617.20.000004
ORF1ab/nsp12709S709StcTtcC11B.1.6210.000089
ORF1ab/nsp12709S709StcTtcC11C.110.010638
ORF1ab/nsp12709S709ATctGct11C.370.000116
ORF1ab/nsp12709S709PTctCct11D.20.000075
ORF1ab/nsp12709S709PTctCct11P.10.000016
ORF1ab/nsp12709S709YtCttAt11P.1.140.000048