CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 694

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12694F694YF5086YnonsyntTttAt1214221214210.99999215520-15522
ORF1ab/nsp12694F694YF5086YnonsyntTTtAC12142210.0000082357415520-15522
ORF1ab/nsp12694F694FF5086FsynttTttC122122115520-15522
ORF1ab/nsp12694F694VF5086VnonsynTttGtt1070.715520-15522
ORF1ab/nsp12694F694VF5086VnonsynTtTGtG1030.315520-15522
ORF1ab/nsp12694F694delF5086deldelTTT---88115520-15522
ORF1ab/nsp12694F694LF5086LnonsynttTttA540.815520-15522
ORF1ab/nsp12694F694LF5086LnonsynTttCtt510.215520-15522

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12694F694YtTttAt121421121422All0.023223
ORF1ab/nsp12694F694YtTTtAC1121422All0
ORF1ab/nsp12694F694YtTttAt7364673647AY.40.114624
ORF1ab/nsp12694F694YtTTtAC173647AY.40.000002
ORF1ab/nsp12694F694YtTttAt1521315213AY.4.20.32995
ORF1ab/nsp12694F694YtTttAt80028002B.1.617.20.030131
ORF1ab/nsp12694F694YtTttAt56925692AY.430.025218
ORF1ab/nsp12694F694YtTttAt36023602AY.50.074378
ORF1ab/nsp12694F694YtTttAt27652765AY.1200.1028
ORF1ab/nsp12694F694YtTttAt25462546AY.4.2.10.379321
ORF1ab/nsp12694F694YtTttAt18561856AY.60.076335
ORF1ab/nsp12694F694YtTttAt908908AY.1110.1663
ORF1ab/nsp12694F694YtTttAt778778AY.46.50.154365
ORF1ab/nsp12694F694YtTttAt574574AY.340.055658
ORF1ab/nsp12694F694YtTttAt526526AY.980.041551
ORF1ab/nsp12694F694YtTttAt466466AY.360.069068
ORF1ab/nsp12694F694YtTttAt455455AY.9.20.016712
ORF1ab/nsp12694F694YtTttAt321321AY.30.003193
ORF1ab/nsp12694F694YtTttAt267267AY.250.001606
ORF1ab/nsp12694F694YtTttAt228228AY.420.009172
ORF1ab/nsp12694F694YtTttAt221221AY.98.10.010703
ORF1ab/nsp12694F694YtTttAt213213AY.440.001296
ORF1ab/nsp12694F694YtTttAt191191AY.1030.001186
ORF1ab/nsp12694F694YtTttAt180180AY.1090.133136
ORF1ab/nsp12694F694YtTttAt169169AY.90.011424
ORF1ab/nsp12694F694YtTttAt166166AY.900.113621
ORF1ab/nsp12694F694YtTttAt157157AY.70.030772
ORF1ab/nsp12694F694YtTttAt152152AY.4.50.016339
ORF1ab/nsp12694F694YtTttAt125125AY.390.003089
ORF1ab/nsp12694F694FttTttC122122All0.000023
ORF1ab/nsp12694F694YtTttAt100100AY.46.60.007221
ORF1ab/nsp12694F694YtTttAt9797AY.330.006477
ORF1ab/nsp12694F694YtTttAt8686B.1.20.000757
ORF1ab/nsp12694F694YtTttAt8585AY.750.004762
ORF1ab/nsp12694F694FttTttC8484AY.430.000372
ORF1ab/nsp12694F694YtTttAt7979AY.790.095642
ORF1ab/nsp12694F694YtTttAt7272AY.4.10.053097
ORF1ab/nsp12694F694YtTttAt6767B.1.1600.00209
ORF1ab/nsp12694F694YtTttAt6262B.10.000568
ORF1ab/nsp12694F694YtTttAt5959AY.46.40.009706
ORF1ab/nsp12694F694YtTttAt5656AY.470.001742
ORF1ab/nsp12694F694YtTttAt5151AY.5.30.017206
ORF1ab/nsp12694F694YtTttAt4747AY.260.001331
ORF1ab/nsp12694F694YtTttAt4545AY.9.10.003768
ORF1ab/nsp12694F694YtTttAt4444B.1.1.70.000039
ORF1ab/nsp12694F694YtTttAt4343AY.1080.047409
ORF1ab/nsp12694F694YtTttAt4242AY.410.012346
ORF1ab/nsp12694F694YtTttAt4242AY.460.004371
ORF1ab/nsp12694F694YtTttAt4242AY.870.034971
ORF1ab/nsp12694F694YtTttAt3838AY.730.025283
ORF1ab/nsp12694F694YtTttAt3636AY.1190.001271
ORF1ab/nsp12694F694YtTttAt3333B.1.4290.000776
ORF1ab/nsp12694F694YtTttAt3030AY.5.40.008301
ORF1ab/nsp12694F694YtTttAt2828AY.120.10.008989
ORF1ab/nsp12694F694YtTttAt2828AY.1210.003789
ORF1ab/nsp12694F694YtTttAt2525AY.1020.000663
ORF1ab/nsp12694F694YtTttAt2525AY.910.018262
ORF1ab/nsp12694F694YtTttAt2424AY.4.40.00982
ORF1ab/nsp12694F694YtTttAt2323AY.1170.001944
ORF1ab/nsp12694F694YtTttAt2323B.1.2430.0016
ORF1ab/nsp12694F694YtTttAt2121AY.1060.007033
ORF1ab/nsp12694F694YtTttAt2020AY.200.000777
ORF1ab/nsp12694F694YtTttAt2020AY.940.008853
ORF1ab/nsp12694F694YtTttAt1919AY.46.30.01774
ORF1ab/nsp12694F694YtTttAt1919B.1.4270.000959
ORF1ab/nsp12694F694YtTttAt1818AY.1180.001128
ORF1ab/nsp12694F694YtTttAt1818AY.540.001716
ORF1ab/nsp12694F694YtTttAt1818B.1.5960.001568
ORF1ab/nsp12694F694YtTttAt1616AY.1100.001803
ORF1ab/nsp12694F694YtTttAt1515AY.46.20.00953
ORF1ab/nsp12694F694YtTttAt1515AY.600.014071
ORF1ab/nsp12694F694YtTttAt1515AY.970.02551
ORF1ab/nsp12694F694YtTttAt1414AY.920.004022
ORF1ab/nsp12694F694YtTttAt1212AY.230.000837
ORF1ab/nsp12694F694YtTttAt1212AY.7.10.001352
ORF1ab/nsp12694F694YtTttAt1212AY.850.005126
ORF1ab/nsp12694F694YtTttAt1111AY.1050.007074
ORF1ab/nsp12694F694VTttGtt710All0.000001
ORF1ab/nsp12694F694VTtTGtG310All0.000001
ORF1ab/nsp12694F694YtTttAt99AY.740.001041
ORF1ab/nsp12694F694YtTttAt99AY.880.007958
ORF1ab/nsp12694F694delTTT---88All0.000002
ORF1ab/nsp12694F694YtTttAt88AY.1140.001849
ORF1ab/nsp12694F694YtTttAt88AY.4.30.006734
ORF1ab/nsp12694F694YtTttAt88B.1.1770.000105
ORF1ab/nsp12694F694YtTttAt88B.1.4040.010417
ORF1ab/nsp12694F694YtTttAt88B.1.6090.003835
ORF1ab/nsp12694F694YtTttAt77AY.1040.013889
ORF1ab/nsp12694F694YtTttAt77AY.1070.003262
ORF1ab/nsp12694F694YtTttAt77AY.370.002212
ORF1ab/nsp12694F694YtTttAt77AY.450.000852
ORF1ab/nsp12694F694YtTttAt77AY.990.007345
ORF1ab/nsp12694F694YtTttAt66AY.116.10.001869
ORF1ab/nsp12694F694YtTttAt66AY.680.001642
ORF1ab/nsp12694F694YtTttAt66B.1.4000.002574
ORF1ab/nsp12694F694LttTttA45All0.000001
ORF1ab/nsp12694F694LTttCtt15All0
ORF1ab/nsp12694F694FttTttC55AY.1030.000031
ORF1ab/nsp12694F694YtTttAt55AY.1130.000712
ORF1ab/nsp12694F694FttTttC55AY.1210.000677
ORF1ab/nsp12694F694YtTttAt55AY.350.001165
ORF1ab/nsp12694F694YtTttAt55AY.380.002496
ORF1ab/nsp12694F694YtTttAt55AY.39.10.000198
ORF1ab/nsp12694F694YtTttAt55AY.710.002375
ORF1ab/nsp12694F694YtTttAt55AY.80.00303
ORF1ab/nsp12694F694delTTT---55B.1.1.70.000004
ORF1ab/nsp12694F694VTttGtt35B.1.1.70.000003
ORF1ab/nsp12694F694VTtTGtG25B.1.1.70.000002
ORF1ab/nsp12694F694YtTttAt55B.1.5510.006452
ORF1ab/nsp12694F694YtTttAt44AY.34.10.00204
ORF1ab/nsp12694F694YtTttAt44AY.610.000419
ORF1ab/nsp12694F694YtTttAt44AY.670.001857
ORF1ab/nsp12694F694YtTttAt44AY.7.20.002237
ORF1ab/nsp12694F694YtTttAt44AY.860.00332
ORF1ab/nsp12694F694FttTttC44B.10.000037
ORF1ab/nsp12694F694YtTttAt44B.1.1.3160.0037
ORF1ab/nsp12694F694FttTttC44B.1.2340.000528
ORF1ab/nsp12694F694YtTttAt44B.1.3690.001141
ORF1ab/nsp12694F694VTttGtt34B.1.5250.000339
ORF1ab/nsp12694F694VTtTGtG14B.1.5250.000113
ORF1ab/nsp12694F694YtTttAt44Q.70.004444
ORF1ab/nsp12694F694YtTttAt33AY.1000.000138
ORF1ab/nsp12694F694YtTttAt33AY.130.000483
ORF1ab/nsp12694F694YtTttAt33AY.320.001597
ORF1ab/nsp12694F694YtTttAt33AY.46.10.00308
ORF1ab/nsp12694F694YtTttAt33AY.630.001161
ORF1ab/nsp12694F694YtTttAt33AY.690.00056
ORF1ab/nsp12694F694YtTttAt33AY.700.000626
ORF1ab/nsp12694F694YtTttAt33AY.720.004082
ORF1ab/nsp12694F694YtTttAt33AY.770.003382
ORF1ab/nsp12694F694YtTttAt33AY.930.000819
ORF1ab/nsp12694F694YtTttAt33AZ.50.010526
ORF1ab/nsp12694F694YtTttAt33B.1.1.2220.000612
ORF1ab/nsp12694F694YtTttAt33B.1.2340.000396
ORF1ab/nsp12694F694YtTttAt22AY.100.00106
ORF1ab/nsp12694F694YtTttAt22AY.140.000176
ORF1ab/nsp12694F694YtTttAt22AY.3.10.000171
ORF1ab/nsp12694F694FttTttC22AY.330.000134
ORF1ab/nsp12694F694FttTttC22AY.40.000003
ORF1ab/nsp12694F694YtTttAt22AY.400.001929
ORF1ab/nsp12694F694FttTttC22AY.420.00008
ORF1ab/nsp12694F694YtTttAt22AY.500.001599
ORF1ab/nsp12694F694YtTttAt22AY.510.001818
ORF1ab/nsp12694F694YtTttAt22AY.590.001059
ORF1ab/nsp12694F694YtTttAt22AY.640.00119
ORF1ab/nsp12694F694YtTttAt22AY.660.002139
ORF1ab/nsp12694F694YtTttAt22AY.780.003082
ORF1ab/nsp12694F694YtTttAt22AY.810.003984
ORF1ab/nsp12694F694YtTttAt22AY.820.002714
ORF1ab/nsp12694F694YtTttAt22AY.890.009804
ORF1ab/nsp12694F694LTttCtt12B.10.000009
ORF1ab/nsp12694F694LttTttA12B.10.000009
ORF1ab/nsp12694F694YtTttAt22B.1.1.2690.002706
ORF1ab/nsp12694F694YtTttAt22B.1.1260.002551
ORF1ab/nsp12694F694YtTttAt22B.1.2390.002442
ORF1ab/nsp12694F694YtTttAt22B.1.3510.000059
ORF1ab/nsp12694F694YtTttAt22B.1.5640.000852
ORF1ab/nsp12694F694YtTttAt22B.1.5770.001375
ORF1ab/nsp12694F694FttTttC22B.1.760.022727
ORF1ab/nsp12694F694FttTttC22P.10.000032
ORF1ab/nsp12694F694YtTttAt11A.2.5.20.001572
ORF1ab/nsp12694F694YtTttAt11AY.10.000396
ORF1ab/nsp12694F694YtTttAt11AY.1160.000287
ORF1ab/nsp12694F694YtTttAt11AY.120.000316
ORF1ab/nsp12694F694FttTttC11AY.1200.000037
ORF1ab/nsp12694F694YtTttAt11AY.120.20.001285
ORF1ab/nsp12694F694YtTttAt11AY.120.2.10.000498
ORF1ab/nsp12694F694YtTttAt11AY.160.00038
ORF1ab/nsp12694F694YtTttAt11AY.16.10.00047
ORF1ab/nsp12694F694YtTttAt11AY.190.00114
ORF1ab/nsp12694F694YtTttAt11AY.23.10.000417
ORF1ab/nsp12694F694YtTttAt11AY.270.000065
ORF1ab/nsp12694F694FttTttC11AY.3.10.000085
ORF1ab/nsp12694F694FttTttC11AY.390.000025
ORF1ab/nsp12694F694YtTttAt11AY.39.20.001541
ORF1ab/nsp12694F694delTTT---11AY.4.50.000107
ORF1ab/nsp12694F694FttTttC11AY.440.000006
ORF1ab/nsp12694F694YtTttAt11AY.480.000465
ORF1ab/nsp12694F694YtTttAt11AY.520.000814
ORF1ab/nsp12694F694YtTttAt11AY.560.001605
ORF1ab/nsp12694F694YtTttAt11AY.650.000533
ORF1ab/nsp12694F694FttTttC11AY.750.000056
ORF1ab/nsp12694F694YtTttAt11AY.75.10.00018
ORF1ab/nsp12694F694YtTttAt11AY.840.000437
ORF1ab/nsp12694F694YtTttAt11AY.99.20.000092
ORF1ab/nsp12694F694YtTttAt11B0.000128
ORF1ab/nsp12694F694YtTttAt11B.1.10.000018
ORF1ab/nsp12694F694YtTttAt11B.1.1.10.000327
ORF1ab/nsp12694F694YtTttAt11B.1.1.2410.00207
ORF1ab/nsp12694F694delTTT---11B.1.1.3110.000358
ORF1ab/nsp12694F694YtTttAt11B.1.1.3720.000689
ORF1ab/nsp12694F694YtTttAt11B.1.1.4200.001006
ORF1ab/nsp12694F694LttTttA11B.1.1.5190.00004
ORF1ab/nsp12694F694FttTttC11B.1.1.70.000001
ORF1ab/nsp12694F694LttTttA11B.1.1.70.000001
ORF1ab/nsp12694F694YtTttAt11B.1.160.160.000929
ORF1ab/nsp12694F694FttTttC11B.1.1770.000013
ORF1ab/nsp12694F694YtTttAt11B.1.177.770.000726
ORF1ab/nsp12694F694YtTttAt11B.1.2190.009434
ORF1ab/nsp12694F694YtTttAt11B.1.2210.000071
ORF1ab/nsp12694F694YtTttAt11B.1.2400.000216
ORF1ab/nsp12694F694YtTttAt11B.1.2410.000812
ORF1ab/nsp12694F694YtTttAt11B.1.3110.000275
ORF1ab/nsp12694F694YtTttAt11B.1.351.20.000303
ORF1ab/nsp12694F694YtTttAt11B.1.416.10.001563
ORF1ab/nsp12694F694FttTttC11B.1.4680.005714
ORF1ab/nsp12694F694YtTttAt11B.1.5170.000427
ORF1ab/nsp12694F694YtTttAt11B.1.5250.000113
ORF1ab/nsp12694F694YtTttAt11B.1.5670.003333
ORF1ab/nsp12694F694YtTttAt11B.1.5950.000261
ORF1ab/nsp12694F694FttTttC11B.1.617.10.000129
ORF1ab/nsp12694F694FttTttC11B.1.617.20.000004
ORF1ab/nsp12694F694delTTT---11B.1.617.20.000004
ORF1ab/nsp12694F694VTttGtt11B.1.6360.006711
ORF1ab/nsp12694F694LttTttA11D.20.000075
ORF1ab/nsp12694F694YtTttAt11P.10.000016
ORF1ab/nsp12694F694YtTttAt11P.20.000187