CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 686

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12686T686TT5078TsynacAacG2662180.81954915496-15498
ORF1ab/nsp12686T686TT5078TsynacAacT266330.1240615496-15498
ORF1ab/nsp12686T686TT5078TsynacAacC266150.05639115496-15498
ORF1ab/nsp12686T686IT5078InonsynaCaaTa1080.815496-15498
ORF1ab/nsp12686T686IT5078InonsynaCAaTT1010.115496-15498
ORF1ab/nsp12686T686IT5078InonsynaCAaTC1010.115496-15498
ORF1ab/nsp12686T686delT5078deldelACA---99115496-15498
ORF1ab/nsp12686T686KT5078KnonsynaCaaAa77115496-15498
ORF1ab/nsp12686T686AT5078AnonsynAcaGca760.85714315496-15498
ORF1ab/nsp12686T686AT5078AnonsynAcAGcT710.14285715496-15498
ORF1ab/nsp12686T686PT5078PnonsynAcaCca530.615496-15498
ORF1ab/nsp12686T686PT5078PnonsynAcACcC520.415496-15498
ORF1ab/nsp12686T686NT5078NnonsynaCAaAC33115496-15498
ORF1ab/nsp12686T686del1T5078del1delAca-ca320.66666715496-15498
ORF1ab/nsp12686T686del1T5078del1delAcA-cT310.33333315496-15498
ORF1ab/nsp12686T686HT5078HnonsynACACAC22115496-15498
ORF1ab/nsp12686T686QT5078QnonsynACaCAa22115496-15498
ORF1ab/nsp12686T686VT5078VnonsynACaGTa210.515496-15498
ORF1ab/nsp12686T686VT5078VnonsynACAGTT210.515496-15498
ORF1ab/nsp12686T686ST5078SnonsynaCAaGC210.515496-15498
ORF1ab/nsp12686T686ST5078SnonsynAcaTca210.515496-15498

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12686T686TacAacG218266All0.000042
ORF1ab/nsp12686T686TacAacT33266All0.000006
ORF1ab/nsp12686T686TacAacC15266All0.000003
ORF1ab/nsp12686T686TacAacG113113B.1.6320.758389
ORF1ab/nsp12686T686TacAacG1418B.1.1.70.000013
ORF1ab/nsp12686T686TacAacC318B.1.1.70.000003
ORF1ab/nsp12686T686TacAacT118B.1.1.70.000001
ORF1ab/nsp12686T686TacAacT1313A0.005031
ORF1ab/nsp12686T686TacAacG1313B.1.3990.025145
ORF1ab/nsp12686T686IaCaaTa810All0.000002
ORF1ab/nsp12686T686IaCAaTT110All0
ORF1ab/nsp12686T686IaCAaTC110All0
ORF1ab/nsp12686T686delACA---99All0.000002
ORF1ab/nsp12686T686TacAacG99AY.116.10.002803
ORF1ab/nsp12686T686TacAacG99B.1.4800.022388
ORF1ab/nsp12686T686TacAacG48B.10.000037
ORF1ab/nsp12686T686TacAacT38B.10.000027
ORF1ab/nsp12686T686TacAacC18B.10.000009
ORF1ab/nsp12686T686TacAacG88P.10.000126
ORF1ab/nsp12686T686KaCaaAa77All0.000001
ORF1ab/nsp12686T686AAcaGca67All0.000001
ORF1ab/nsp12686T686AAcAGcT17All0
ORF1ab/nsp12686T686TacAacG46AY.40.000006
ORF1ab/nsp12686T686TacAacT26AY.40.000003
ORF1ab/nsp12686T686PAcaCca35All0.000001
ORF1ab/nsp12686T686PAcACcC25All0
ORF1ab/nsp12686T686TacAacG55AY.200.000194
ORF1ab/nsp12686T686TacAacG55AY.440.00003
ORF1ab/nsp12686T686delACA---55B.1.1.70.000004
ORF1ab/nsp12686T686TacAacG45B.1.1770.000053
ORF1ab/nsp12686T686TacAacC15B.1.1770.000013
ORF1ab/nsp12686T686TacAacC55P.1.170.000809
ORF1ab/nsp12686T686TacAacT44AY.1190.000141
ORF1ab/nsp12686T686TacAacG44AY.46.60.000289
ORF1ab/nsp12686T686TacAacG44B.1.20.000035
ORF1ab/nsp12686T686TacAacG44B.1.6090.001918
ORF1ab/nsp12686T686TacAacC230.111111
ORF1ab/nsp12686T686TacAacT130.055556
ORF1ab/nsp12686T686NaCAaAC33All0.000001
ORF1ab/nsp12686T686del1Aca-ca23All0
ORF1ab/nsp12686T686del1AcA-cT13All0
ORF1ab/nsp12686T686TacAacG33B.1.4680.017143
ORF1ab/nsp12686T686TacAacT33B.460.0625
ORF1ab/nsp12686T686NaCAaAC220.111111
ORF1ab/nsp12686T686KaCaaAa220.111111
ORF1ab/nsp12686T686AAcaGca120.055556
ORF1ab/nsp12686T686IaCaaTa120.055556
ORF1ab/nsp12686T686VACAGTT120.055556
ORF1ab/nsp12686T686VACaGTa120.055556
ORF1ab/nsp12686T686AAcAGcT120.055556
ORF1ab/nsp12686T686IaCAaTT120.055556
ORF1ab/nsp12686T686PAcaCca120.055556
ORF1ab/nsp12686T686PAcACcC120.055556
ORF1ab/nsp12686T686HACACAC22All0
ORF1ab/nsp12686T686QACaCAa22All0
ORF1ab/nsp12686T686VACAGTT12All0
ORF1ab/nsp12686T686VACaGTa12All0
ORF1ab/nsp12686T686SAcaTca12All0
ORF1ab/nsp12686T686SaCAaGC12All0
ORF1ab/nsp12686T686TacAacG22B.1.177.600.000437
ORF1ab/nsp12686T686IaCAaTC12B.1.20.000009
ORF1ab/nsp12686T686IaCaaTa12B.1.20.000009
ORF1ab/nsp12686T686PAcACcC12B.1.2210.000071
ORF1ab/nsp12686T686PAcaCca12B.1.2210.000071
ORF1ab/nsp12686T686TacAacG22B.1.258.170.000208
ORF1ab/nsp12686T686TacAacT12B.1.617.20.000004
ORF1ab/nsp12686T686TacAacG12B.1.617.20.000004
ORF1ab/nsp12686T686TacAacG22B.1.6230.001073
ORF1ab/nsp12686T686TacAacC22P.30.00319
ORF1ab/nsp12686T686HACACAC110.055556
ORF1ab/nsp12686T686QACaCAa110.055556
ORF1ab/nsp12686T686IaCaaTa11A0.000387
ORF1ab/nsp12686T686TacAacG11A.20.000662
ORF1ab/nsp12686T686TacAacT11A.23.10.000704
ORF1ab/nsp12686T686TacAacT11A.250.018182
ORF1ab/nsp12686T686IaCaaTa11AY.1030.000006
ORF1ab/nsp12686T686IaCaaTa11AY.1160.000287
ORF1ab/nsp12686T686TacAacG11AY.1170.000085
ORF1ab/nsp12686T686TacAacG11AY.160.00038
ORF1ab/nsp12686T686AAcaGca11AY.250.000006
ORF1ab/nsp12686T686TacAacT11AY.260.000028
ORF1ab/nsp12686T686TacAacG11AY.3.10.000085
ORF1ab/nsp12686T686TacAacT11AY.390.000025
ORF1ab/nsp12686T686PAcaCca11AY.4.20.000022
ORF1ab/nsp12686T686delACA---11AY.4.50.000107
ORF1ab/nsp12686T686AAcaGca11AY.440.000006
ORF1ab/nsp12686T686del1Aca-ca11AY.440.000006
ORF1ab/nsp12686T686TacAacT11AY.610.000105
ORF1ab/nsp12686T686AAcaGca11B.10.000009
ORF1ab/nsp12686T686IaCaaTa11B.10.000009
ORF1ab/nsp12686T686TacAacG11B.1.1.2220.000204
ORF1ab/nsp12686T686IaCaaTa11B.1.1.70.000001
ORF1ab/nsp12686T686AAcaGca11B.1.1.70.000001
ORF1ab/nsp12686T686KaCaaAa11B.1.1180.006711
ORF1ab/nsp12686T686delACA---11B.1.160.230.004831
ORF1ab/nsp12686T686delACA---11B.1.177.540.000606
ORF1ab/nsp12686T686del1Aca-ca11B.1.20.000009
ORF1ab/nsp12686T686KaCaaAa11B.1.2060.000816
ORF1ab/nsp12686T686TacAacC11B.1.2210.000071
ORF1ab/nsp12686T686KaCaaAa11B.1.2210.000071
ORF1ab/nsp12686T686QACaCAa11B.1.2210.000071
ORF1ab/nsp12686T686NaCAaAC11B.1.2210.000071
ORF1ab/nsp12686T686SaCAaGC11B.1.2210.000071
ORF1ab/nsp12686T686HACACAC11B.1.2210.000071
ORF1ab/nsp12686T686TacAacG11B.1.2580.000067
ORF1ab/nsp12686T686AAcaGca11B.1.3800.006623
ORF1ab/nsp12686T686KaCaaAa11B.1.3980.002976
ORF1ab/nsp12686T686IaCaaTa11B.1.4290.000024
ORF1ab/nsp12686T686del1AcA-cT11B.1.5960.000087
ORF1ab/nsp12686T686KaCaaAa11B.1.617.20.000004
ORF1ab/nsp12686T686delACA---11B.1.617.20.000004
ORF1ab/nsp12686T686TacAacG11B.1.6210.000089
ORF1ab/nsp12686T686TacAacG11D.20.000075
ORF1ab/nsp12686T686SAcaTca11P.1.10.000318