CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 683

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12683G683GG5075GsynggAggG140113650.97430415487-15489
ORF1ab/nsp12683G683GG5075GsynggAggC1401220.015703115487-15489
ORF1ab/nsp12683G683GG5075GsynggAggT1401140.0099928615487-15489
ORF1ab/nsp12683G683XG5075XnonsynGgaTga3939115487-15489
ORF1ab/nsp12683G683RG5075RnonsynGgaAga1880.44444415487-15489
ORF1ab/nsp12683G683RG5075RnonsynGgaCga1860.33333315487-15489
ORF1ab/nsp12683G683RG5075RnonsynGgAAgG1830.16666715487-15489
ORF1ab/nsp12683G683RG5075RnonsynGgACgG1810.055555615487-15489
ORF1ab/nsp12683G683VG5075VnonsyngGagTa1515115487-15489
ORF1ab/nsp12683G683delG5075deldelGGA---99115487-15489
ORF1ab/nsp12683G683del1G5075del1delGga-ga66115487-15489
ORF1ab/nsp12683G683AG5075AnonsyngGagCa540.815487-15489
ORF1ab/nsp12683G683AG5075AnonsyngGAgCG510.215487-15489
ORF1ab/nsp12683G683EG5075EnonsyngGagAa320.66666715487-15489
ORF1ab/nsp12683G683EG5075EnonsyngGAgAG310.33333315487-15489
ORF1ab/nsp12683G683SG5075SnonsynGGATCG210.515487-15489
ORF1ab/nsp12683G683SG5075SnonsynGGaTCa210.515487-15489
ORF1ab/nsp12683G683WG5075WnonsynGgATgG11115487-15489
ORF1ab/nsp12683G683PG5075PnonsynGGaCCa11115487-15489

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12683G683GggAggG13651401All0.000261
ORF1ab/nsp12683G683GggAggC221401All0.000004
ORF1ab/nsp12683G683GggAggT141401All0.000003
ORF1ab/nsp12683G683GggAggG549549B.1.20.004834
ORF1ab/nsp12683G683GggAggG201201B.1.1.3510.561453
ORF1ab/nsp12683G683GggAggG140140AY.430.00062
ORF1ab/nsp12683G683GggAggG9398B.1.617.20.00035
ORF1ab/nsp12683G683GggAggC398B.1.617.20.000011
ORF1ab/nsp12683G683GggAggT298B.1.617.20.000008
ORF1ab/nsp12683G683GggAggG8585AY.50.001755
ORF1ab/nsp12683G683GggAggG5050AY.140.004401
ORF1ab/nsp12683G683XGgaTga3939All0.000007
ORF1ab/nsp12683G683GggAggG3233AY.1030.000199
ORF1ab/nsp12683G683GggAggT133AY.1030.000006
ORF1ab/nsp12683G683GggAggG3333AY.130.005312
ORF1ab/nsp12683G683GggAggG1720B.10.000156
ORF1ab/nsp12683G683GggAggC220B.10.000018
ORF1ab/nsp12683G683GggAggT120B.10.000009
ORF1ab/nsp12683G683GggAggG1319AY.40.00002
ORF1ab/nsp12683G683GggAggC419AY.40.000006
ORF1ab/nsp12683G683GggAggT219AY.40.000003
ORF1ab/nsp12683G683GggAggG1819B.1.1.70.000016
ORF1ab/nsp12683G683GggAggT119B.1.1.70.000001
ORF1ab/nsp12683G683RGgaAga818All0.000002
ORF1ab/nsp12683G683RGgaCga618All0.000001
ORF1ab/nsp12683G683RGgAAgG318All0.000001
ORF1ab/nsp12683G683RGgACgG118All0
ORF1ab/nsp12683G683GggAggG1717AY.5.40.004704
ORF1ab/nsp12683G683GggAggG1717B.1.10.000308
ORF1ab/nsp12683G683VgGagTa1515All0.000003
ORF1ab/nsp12683G683GggAggG811AY.440.000049
ORF1ab/nsp12683G683GggAggC211AY.440.000012
ORF1ab/nsp12683G683GggAggT111AY.440.000006
ORF1ab/nsp12683G683delGGA---99All0.000002
ORF1ab/nsp12683G683GggAggG89B.1.4290.000188
ORF1ab/nsp12683G683GggAggT19B.1.4290.000024
ORF1ab/nsp12683G683GggAggG77AY.1020.000186
ORF1ab/nsp12683G683del1Gga-ga66All0.000001
ORF1ab/nsp12683G683XGgaTga66B.1.1.70.000005
ORF1ab/nsp12683G683GggAggG550.277778
ORF1ab/nsp12683G683AgGagCa45All0.000001
ORF1ab/nsp12683G683AgGAgCG15All0
ORF1ab/nsp12683G683GggAggG55AY.30.00005
ORF1ab/nsp12683G683RGgaAga35B.10.000027
ORF1ab/nsp12683G683RGgaCga25B.10.000018
ORF1ab/nsp12683G683delGGA---55B.1.1.70.000004
ORF1ab/nsp12683G683GggAggG55P.1.150.001162
ORF1ab/nsp12683G683RGgAAgG240.111111
ORF1ab/nsp12683G683RGgaAga240.111111
ORF1ab/nsp12683G683GggAggC44AY.370.001264
ORF1ab/nsp12683G683XGgaTga44AY.40.000006
ORF1ab/nsp12683G683VgGagTa44AY.40.000006
ORF1ab/nsp12683G683GggAggG44AY.4.20.000087
ORF1ab/nsp12683G683XGgaTga44AY.430.000018
ORF1ab/nsp12683G683GggAggG44AY.460.000416
ORF1ab/nsp12683G683GggAggG44B.1.1.2220.000816
ORF1ab/nsp12683G683EgGagAa23All0
ORF1ab/nsp12683G683EgGAgAG13All0
ORF1ab/nsp12683G683GggAggG33AY.230.000209
ORF1ab/nsp12683G683GggAggG33AY.250.000018
ORF1ab/nsp12683G683GggAggG33AY.270.000194
ORF1ab/nsp12683G683GggAggG33AY.540.000286
ORF1ab/nsp12683G683GggAggG33AY.980.000237
ORF1ab/nsp12683G683GggAggG33B.1.5960.000261
ORF1ab/nsp12683G683GggAggG33B.1.6270.006061
ORF1ab/nsp12683G683GggAggT23P.10.000032
ORF1ab/nsp12683G683GggAggG13P.10.000016
ORF1ab/nsp12683G683AgGagCa120.055556
ORF1ab/nsp12683G683AgGAgCG120.055556
ORF1ab/nsp12683G683SGGATCG120.055556
ORF1ab/nsp12683G683SGGaTCa120.055556
ORF1ab/nsp12683G683SGGaTCa12All0
ORF1ab/nsp12683G683SGGATCG12All0
ORF1ab/nsp12683G683GggAggC22AY.1110.000366
ORF1ab/nsp12683G683GggAggC12AY.390.000025
ORF1ab/nsp12683G683GggAggG12AY.390.000025
ORF1ab/nsp12683G683GggAggG22AY.4.30.001684
ORF1ab/nsp12683G683GggAggG22AY.46.20.001271
ORF1ab/nsp12683G683GggAggG22AY.46.40.000329
ORF1ab/nsp12683G683XGgaTga22AY.9.20.000073
ORF1ab/nsp12683G683XGgaTga22B.10.000018
ORF1ab/nsp12683G683del1Gga-ga22B.10.000018
ORF1ab/nsp12683G683EgGAgAG12B.10.000009
ORF1ab/nsp12683G683EgGagAa12B.10.000009
ORF1ab/nsp12683G683GggAggG12B.1.1.10.000327
ORF1ab/nsp12683G683GggAggC12B.1.1.10.000327
ORF1ab/nsp12683G683GggAggT12B.1.1.3980.003226
ORF1ab/nsp12683G683GggAggG12B.1.1.3980.003226
ORF1ab/nsp12683G683GggAggG22B.1.1.5190.000079
ORF1ab/nsp12683G683XGgaTga22B.1.1770.000026
ORF1ab/nsp12683G683del1Gga-ga22B.1.20.000018
ORF1ab/nsp12683G683XGgaTga22B.1.214.30.014286
ORF1ab/nsp12683G683RGgaAga12B.1.2210.000071
ORF1ab/nsp12683G683RGgAAgG12B.1.2210.000071
ORF1ab/nsp12683G683GggAggG22B.1.2580.000133
ORF1ab/nsp12683G683VgGagTa22B.1.617.20.000008
ORF1ab/nsp12683G683XGgaTga110.055556
ORF1ab/nsp12683G683WGgATgG110.055556
ORF1ab/nsp12683G683VgGagTa11A.20.000662
ORF1ab/nsp12683G683XGgaTga11A.270.001656
ORF1ab/nsp12683G683WGgATgG11All0
ORF1ab/nsp12683G683PGGaCCa11All0
ORF1ab/nsp12683G683VgGagTa11AY.1030.000006
ORF1ab/nsp12683G683GggAggG11AY.1170.000085
ORF1ab/nsp12683G683VgGagTa11AY.1200.000037
ORF1ab/nsp12683G683GggAggG11AY.16.10.00047
ORF1ab/nsp12683G683GggAggT11AY.260.000028
ORF1ab/nsp12683G683XGgaTga11AY.30.00001
ORF1ab/nsp12683G683GggAggG11AY.320.000532
ORF1ab/nsp12683G683GggAggG11AY.34.10.00051
ORF1ab/nsp12683G683PGGaCCa11AY.390.000025
ORF1ab/nsp12683G683AgGagCa11AY.40.000002
ORF1ab/nsp12683G683RGgaCga11AY.40.000002
ORF1ab/nsp12683G683delGGA---11AY.4.50.000107
ORF1ab/nsp12683G683XGgaTga11AY.420.00004
ORF1ab/nsp12683G683XGgaTga11AY.440.000006
ORF1ab/nsp12683G683GggAggG11AY.46.10.001027
ORF1ab/nsp12683G683VgGagTa11AY.60.000041
ORF1ab/nsp12683G683GggAggG11AY.650.000533
ORF1ab/nsp12683G683XGgaTga11AY.7.10.000113
ORF1ab/nsp12683G683GggAggG11AY.790.001211
ORF1ab/nsp12683G683RGgaCga11AY.820.001357
ORF1ab/nsp12683G683GggAggG11AY.850.000427
ORF1ab/nsp12683G683GggAggC11AY.90.000068
ORF1ab/nsp12683G683AgGagCa11AZ.30.00152
ORF1ab/nsp12683G683VgGagTa11B.10.000009
ORF1ab/nsp12683G683XGgaTga11B.1.10.000018
ORF1ab/nsp12683G683VgGagTa11B.1.10.000018
ORF1ab/nsp12683G683RGgACgG11B.1.1.1530.001095
ORF1ab/nsp12683G683GggAggG11B.1.1.2140.000055
ORF1ab/nsp12683G683GggAggT11B.1.1.2160.00089
ORF1ab/nsp12683G683VgGagTa11B.1.1.3690.000446
ORF1ab/nsp12683G683VgGagTa11B.1.1.70.000001
ORF1ab/nsp12683G683RGgaAga11B.1.1.70.000001
ORF1ab/nsp12683G683delGGA---11B.1.160.230.004831
ORF1ab/nsp12683G683del1Gga-ga11B.1.1770.000013
ORF1ab/nsp12683G683EgGagAa11B.1.1770.000013
ORF1ab/nsp12683G683XGgaTga11B.1.177.120.000152
ORF1ab/nsp12683G683delGGA---11B.1.177.540.000606
ORF1ab/nsp12683G683XGgaTga11B.1.177.600.000218
ORF1ab/nsp12683G683XGgaTga11B.1.177.810.000189
ORF1ab/nsp12683G683RGgaCga11B.1.20.000009
ORF1ab/nsp12683G683AgGagCa11B.1.20.000009
ORF1ab/nsp12683G683XGgaTga11B.1.20.000009
ORF1ab/nsp12683G683XGgaTga11B.1.214.20.0006
ORF1ab/nsp12683G683GggAggG11B.1.2210.000071
ORF1ab/nsp12683G683GggAggC11B.1.2430.00007
ORF1ab/nsp12683G683GggAggG11B.1.2840.013158
ORF1ab/nsp12683G683GggAggG11B.1.3500.002933
ORF1ab/nsp12683G683XGgaTga11B.1.3510.00003
ORF1ab/nsp12683G683GggAggG11B.1.36.180.00042
ORF1ab/nsp12683G683XGgaTga11B.1.3960.000706
ORF1ab/nsp12683G683RGgaAga11B.1.3980.002976
ORF1ab/nsp12683G683GggAggG11B.1.4270.00005
ORF1ab/nsp12683G683del1Gga-ga11B.1.5640.000426
ORF1ab/nsp12683G683RGgaCga11B.1.5960.000087
ORF1ab/nsp12683G683XGgaTga11B.1.5960.000087
ORF1ab/nsp12683G683GggAggG11B.1.617.10.000129
ORF1ab/nsp12683G683delGGA---11B.1.617.20.000004
ORF1ab/nsp12683G683GggAggC11B.400.000364
ORF1ab/nsp12683G683XGgaTga11D.20.000075
ORF1ab/nsp12683G683XGgaTga11P.10.000016
ORF1ab/nsp12683G683VgGagTa11Q.80.000165