CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 680 | T680T | T5072T | syn | acC | acT | 8207 | 7248 | 0.883149 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680T | T5072T | syn | acC | acA | 8207 | 955 | 0.116364 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680T | T5072T | syn | acC | acG | 8207 | 4 | 0.000487389 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680I | T5072I | nonsyn | aCc | aTc | 51 | 48 | 0.941176 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680I | T5072I | nonsyn | aCC | aTT | 51 | 2 | 0.0392157 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680I | T5072I | nonsyn | aCC | aTA | 51 | 1 | 0.0196078 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680N | T5072N | nonsyn | aCc | aAc | 17 | 17 | 1 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680A | T5072A | nonsyn | Acc | Gcc | 14 | 12 | 0.857143 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680A | T5072A | nonsyn | AcC | GcG | 14 | 1 | 0.0714286 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680A | T5072A | nonsyn | AcC | GcT | 14 | 1 | 0.0714286 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680del | T5072del | del | ACC | --- | 12 | 12 | 1 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680S | T5072S | nonsyn | Acc | Tcc | 6 | 5 | 0.833333 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680S | T5072S | nonsyn | aCc | aGc | 6 | 1 | 0.166667 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680V | T5072V | nonsyn | ACc | GTc | 3 | 2 | 0.666667 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680V | T5072V | nonsyn | ACC | GTT | 3 | 1 | 0.333333 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680del1 | T5072del1 | del | aCc | a-c | 2 | 2 | 1 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680G | T5072G | nonsyn | ACC | GGG | 2 | 1 | 0.5 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680G | T5072G | nonsyn | ACc | GGc | 2 | 1 | 0.5 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680K | T5072K | nonsyn | aCC | aAA | 1 | 1 | 1 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680del2 | T5072del2 | del | ACc | --c | 1 | 1 | 1 | 15478-15480 |
ORF1ab/nsp12 | 680 | T680D | T5072D | nonsyn | ACc | GAc | 1 | 1 | 1 | 15478-15480 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 7248 | 8207 | All | 0.001386 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 955 | 8207 | All | 0.000183 |
ORF1ab/nsp12 | 680 | T680T | acC | acG | 4 | 8207 | All | 0.000001 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 5957 | 5957 | B.1.177.7 | 0.982031 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 570 | 570 | AY.45 | 0.06936 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 224 | 253 | B.1.1.7 | 0.000201 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 27 | 253 | B.1.1.7 | 0.000024 |
ORF1ab/nsp12 | 680 | T680T | acC | acG | 2 | 253 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 203 | 208 | AY.44 | 0.001236 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 5 | 208 | AY.44 | 0.00003 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 108 | 108 | AY.120 | 0.004015 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 93 | 100 | B.1.177 | 0.001225 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 7 | 100 | B.1.177 | 0.000092 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 78 | 92 | AY.3 | 0.000776 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 14 | 92 | AY.3 | 0.000139 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 83 | 83 | B.1.1.317 | 0.03417 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 53 | 66 | B.1.617.2 | 0.0002 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 13 | 66 | B.1.617.2 | 0.000049 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 46 | 56 | AY.25 | 0.000277 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 10 | 56 | AY.25 | 0.00006 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 48 | 51 | All | 0.000009 |
ORF1ab/nsp12 | 680 | T680I | aCC | aTT | 2 | 51 | All | 0 |
ORF1ab/nsp12 | 680 | T680I | aCC | aTA | 1 | 51 | All | 0 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 50 | 50 | AY.85 | 0.021358 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 24 | 48 | AY.4 | 0.000037 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 23 | 48 | AY.4 | 0.000036 |
ORF1ab/nsp12 | 680 | T680T | acC | acG | 1 | 48 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 37 | 46 | B.1 | 0.000339 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 9 | 46 | B.1 | 0.000082 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 34 | 37 | AY.39.1 | 0.001347 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 3 | 37 | AY.39.1 | 0.000119 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 27 | 36 | B.1.2 | 0.000238 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 9 | 36 | B.1.2 | 0.000079 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 31 | 31 | B.1.587 | 0.058824 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 28 | 29 | AY.103 | 0.000174 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 29 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 25 | 25 | AY.120.1 | 0.008026 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 24 | 24 | B.1.177.16 | 0.015947 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 16 | 23 | AY.43 | 0.000071 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 7 | 23 | AY.43 | 0.000031 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 23 | 23 | B.1.237 | 0.114428 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 19 | 19 | AY.118 | 0.00119 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 17 | 17 | All | 0.000003 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 11 | 16 | AY.102 | 0.000292 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 5 | 16 | AY.102 | 0.000133 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 15 | 15 | AY.5.3 | 0.005061 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 12 | 14 | All | 0.000002 |
ORF1ab/nsp12 | 680 | T680A | AcC | GcG | 1 | 14 | All | 0 |
ORF1ab/nsp12 | 680 | T680A | AcC | GcT | 1 | 14 | All | 0 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 14 | 14 | AY.3.1 | 0.001194 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 14 | 14 | B.1.36.9 | 0.045016 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 13 | 13 | B | 0.001662 |
ORF1ab/nsp12 | 680 | T680del | ACC | --- | 12 | 12 | All | 0.000002 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 8 | 12 | AY.39 | 0.000198 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 4 | 12 | AY.39 | 0.000099 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 6 | 10 | AY.20 | 0.000233 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 4 | 10 | AY.20 | 0.000155 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 5 | 10 | AY.26 | 0.000142 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 5 | 10 | AY.26 | 0.000142 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 6 | 10 | AY.98.1 | 0.000291 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 4 | 10 | AY.98.1 | 0.000194 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 8 | 10 | B.1 | 0.000073 |
ORF1ab/nsp12 | 680 | T680I | aCC | aTA | 1 | 10 | B.1 | 0.000009 |
ORF1ab/nsp12 | 680 | T680I | aCC | aTT | 1 | 10 | B.1 | 0.000009 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 7 | 8 | P.1 | 0.00011 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 8 | P.1 | 0.000016 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 7 | 7 | AH.3 | 0.026616 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 5 | 6 | A | 0.001935 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 6 | A | 0.000387 |
ORF1ab/nsp12 | 680 | T680S | Acc | Tcc | 5 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 680 | T680S | aCc | aGc | 1 | 6 | All | 0 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 5 | 6 | AY.4.2 | 0.000108 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 6 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp12 | 680 | T680del | ACC | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 4 | 5 | AY.5 | 0.000083 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 5 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 5 | 5 | B.1.1.435 | 0.172414 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 4 | 4 | 0.222222 | |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 4 | 4 | B.1.177.65 | 0.002661 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 3 | 4 | B.1.429 | 0.000071 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 4 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 3 | 4 | B.1.525 | 0.000339 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 4 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 680 | T680V | ACc | GTc | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 680 | T680V | ACC | GTT | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 3 | 3 | AW.1 | 0.009146 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 3 | AY.113 | 0.000285 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 3 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 2 | 3 | AY.23 | 0.000139 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 3 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 2 | 3 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 3 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 3 | 3 | B.1.177.15 | 0.001893 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 3 | 3 | B.29 | 0.010526 |
ORF1ab/nsp12 | 680 | T680del1 | aCc | a-c | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 680 | T680G | ACc | GGc | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 680 | T680G | ACC | GGG | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp12 | 680 | T680V | ACC | GTT | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 680 | T680V | ACc | GTc | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 680 | T680A | AcC | GcT | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 680 | T680I | aCC | aTT | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp12 | 680 | T680del1 | aCc | a-c | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 2 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 2 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 2 | 2 | B.1.160.9 | 0.014388 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | B.1.177.63 | 0.005405 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 680 | T680G | ACc | GGc | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 680 | T680G | ACC | GGG | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 680 | T680A | AcC | GcG | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | B.1.602 | 0.013072 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp12 | 680 | T680K | aCC | aAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 680 | T680S | Acc | Tcc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 680 | T680D | ACc | GAc | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 680 | T680del2 | ACc | --c | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 680 | T680K | aCC | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 680 | T680S | Acc | Tcc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 680 | T680del | ACC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | AY.91.1 | 0.004065 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 680 | T680S | Acc | Tcc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.1.257 | 0.009709 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.1.271 | 0.055556 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 680 | T680del2 | ACc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 680 | T680S | aCc | aGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp12 | 680 | T680del | ACC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 680 | T680del | ACC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 680 | T680del | ACC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 680 | T680S | Acc | Tcc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp12 | 680 | T680N | aCc | aAc | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp12 | 680 | T680A | Acc | Gcc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.548 | 0.035714 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 680 | T680D | ACc | GAc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 680 | T680del | ACC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 680 | T680V | ACc | GTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp12 | 680 | T680T | acC | acT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 680 | T680T | acC | acG | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp12 | 680 | T680I | aCc | aTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 680 | T680S | Acc | Tcc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp12 | 680 | T680T | acC | acA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 680 | T680del | ACC | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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