CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 679

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12679G679GG5071GsynggAggT175012380.70742915475-15477
ORF1ab/nsp12679G679GG5071GsynggAggG17503640.20815475-15477
ORF1ab/nsp12679G679GG5071GsynggAggC17501480.084571415475-15477
ORF1ab/nsp12679G679delG5071deldelGGA---1313115475-15477
ORF1ab/nsp12679G679XG5071XnonsynGgaTga1010115475-15477
ORF1ab/nsp12679G679VG5071VnonsyngGagTa99115475-15477
ORF1ab/nsp12679G679RG5071RnonsynGgaCga750.71428615475-15477
ORF1ab/nsp12679G679RG5071RnonsynGgaAga720.28571415475-15477
ORF1ab/nsp12679G679EG5071EnonsyngGagAa430.7515475-15477
ORF1ab/nsp12679G679EG5071EnonsyngGAgAG410.2515475-15477
ORF1ab/nsp12679G679SG5071SnonsynGgAAgC33115475-15477
ORF1ab/nsp12679G679AG5071AnonsyngGagCa210.515475-15477
ORF1ab/nsp12679G679AG5071AnonsyngGAgCC210.515475-15477
ORF1ab/nsp12679G679del1G5071del1delGgATg-210.515475-15477
ORF1ab/nsp12679G679del1G5071del1delGga-ga210.515475-15477
ORF1ab/nsp12679G679del2G5071del2delgGAg--11115475-15477
ORF1ab/nsp12679G679CG5071CnonsynGgATgT11115475-15477
ORF1ab/nsp12679G679WG5071WnonsynGgATgG11115475-15477

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12679G679GggAggT12381750All0.000237
ORF1ab/nsp12679G679GggAggG3641750All0.00007
ORF1ab/nsp12679G679GggAggC1481750All0.000028
ORF1ab/nsp12679G679GggAggT987987B.1.3890.988978
ORF1ab/nsp12679G679GggAggT117117AY.200.004547
ORF1ab/nsp12679G679GggAggT95106B.10.00087
ORF1ab/nsp12679G679GggAggG8106B.10.000073
ORF1ab/nsp12679G679GggAggC3106B.10.000027
ORF1ab/nsp12679G679GggAggG6290B.1.1.70.000056
ORF1ab/nsp12679G679GggAggT1690B.1.1.70.000014
ORF1ab/nsp12679G679GggAggC1290B.1.1.70.000011
ORF1ab/nsp12679G679GggAggC6262B.1.177.440.032174
ORF1ab/nsp12679G679GggAggG5252B.1.1.580.27957
ORF1ab/nsp12679G679GggAggG4646B.1.1.280.014317
ORF1ab/nsp12679G679GggAggG3238B.1.20.000282
ORF1ab/nsp12679G679GggAggC638B.1.20.000053
ORF1ab/nsp12679G679GggAggG2025P.10.000315
ORF1ab/nsp12679G679GggAggC425P.10.000063
ORF1ab/nsp12679G679GggAggT125P.10.000016
ORF1ab/nsp12679G679GggAggC1121B.1.617.20.000041
ORF1ab/nsp12679G679GggAggG921B.1.617.20.000034
ORF1ab/nsp12679G679GggAggT121B.1.617.20.000004
ORF1ab/nsp12679G679GggAggG1320AY.40.00002
ORF1ab/nsp12679G679GggAggC620AY.40.000009
ORF1ab/nsp12679G679GggAggT120AY.40.000002
ORF1ab/nsp12679G679GggAggG1819AY.440.00011
ORF1ab/nsp12679G679GggAggC119AY.440.000006
ORF1ab/nsp12679G679GggAggG1414B.1.1.1760.006151
ORF1ab/nsp12679G679delGGA---1313All0.000002
ORF1ab/nsp12679G679GggAggC912AY.230.000628
ORF1ab/nsp12679G679GggAggG312AY.230.000209
ORF1ab/nsp12679G679GggAggC711B.1.1770.000092
ORF1ab/nsp12679G679GggAggT411B.1.1770.000053
ORF1ab/nsp12679G679XGgaTga1010All0.000002
ORF1ab/nsp12679G679VgGagTa99All0.000002
ORF1ab/nsp12679G679GggAggG58AY.30.00005
ORF1ab/nsp12679G679GggAggT38AY.30.00003
ORF1ab/nsp12679G679GggAggG88B.1.1.5190.000318
ORF1ab/nsp12679G679GggAggC77AA.70.06422
ORF1ab/nsp12679G679RGgaCga57All0.000001
ORF1ab/nsp12679G679RGgaAga27All0
ORF1ab/nsp12679G679delGGA---77B.1.1.70.000006
ORF1ab/nsp12679G679GggAggG46AY.1020.000106
ORF1ab/nsp12679G679GggAggT16AY.1020.000027
ORF1ab/nsp12679G679GggAggC16AY.1020.000027
ORF1ab/nsp12679G679GggAggG66AY.1030.000037
ORF1ab/nsp12679G679GggAggT66AY.260.00017
ORF1ab/nsp12679G679GggAggG45AY.240.001724
ORF1ab/nsp12679G679GggAggC15AY.240.000431
ORF1ab/nsp12679G679GggAggG55B.1.1.5250.027322
ORF1ab/nsp12679G679GggAggG35B.1.2580.0002
ORF1ab/nsp12679G679GggAggC25B.1.2580.000133
ORF1ab/nsp12679G679EgGagAa34All0.000001
ORF1ab/nsp12679G679EgGAgAG14All0
ORF1ab/nsp12679G679GggAggG44B.1.360.000584
ORF1ab/nsp12679G679SGgAAgC33All0.000001
ORF1ab/nsp12679G679GggAggG33AY.250.000018
ORF1ab/nsp12679G679GggAggG23AY.430.000009
ORF1ab/nsp12679G679GggAggC13AY.430.000004
ORF1ab/nsp12679G679GggAggG33AY.50.000062
ORF1ab/nsp12679G679GggAggG23B.1.10.000036
ORF1ab/nsp12679G679GggAggC13B.1.10.000018
ORF1ab/nsp12679G679RGgaCga33B.1.1.70.000003
ORF1ab/nsp12679G679SGgAAgC33B.1.1.70.000003
ORF1ab/nsp12679G679GggAggG120.055556
ORF1ab/nsp12679G679GggAggT120.055556
ORF1ab/nsp12679G679AgGagCa12All0
ORF1ab/nsp12679G679del1GgATg-12All0
ORF1ab/nsp12679G679AgGAgCC12All0
ORF1ab/nsp12679G679del1Gga-ga12All0
ORF1ab/nsp12679G679GggAggG22AY.340.000194
ORF1ab/nsp12679G679GggAggG12AY.390.000025
ORF1ab/nsp12679G679GggAggC12AY.390.000025
ORF1ab/nsp12679G679GggAggT12AY.4.20.000022
ORF1ab/nsp12679G679GggAggG12AY.4.20.000022
ORF1ab/nsp12679G679GggAggC22AY.400.001929
ORF1ab/nsp12679G679GggAggC22AY.600.001876
ORF1ab/nsp12679G679GggAggG22AY.750.000112
ORF1ab/nsp12679G679XGgaTga22B.10.000018
ORF1ab/nsp12679G679GggAggG22B.1.1.2050.007435
ORF1ab/nsp12679G679GggAggT22B.1.1.2140.000111
ORF1ab/nsp12679G679EgGagAa22B.1.1.70.000002
ORF1ab/nsp12679G679GggAggG22B.1.3510.000059
ORF1ab/nsp12679G679GggAggG12B.1.5240.001406
ORF1ab/nsp12679G679GggAggC12B.1.5240.001406
ORF1ab/nsp12679G679GggAggG22B.530.023529
ORF1ab/nsp12679G679GggAggG22B.60.00182
ORF1ab/nsp12679G679XGgaTga110.055556
ORF1ab/nsp12679G679CGgATgT110.055556
ORF1ab/nsp12679G679GggAggT11A.20.000662
ORF1ab/nsp12679G679WGgATgG11All0
ORF1ab/nsp12679G679CGgATgT11All0
ORF1ab/nsp12679G679del2gGAg--11All0
ORF1ab/nsp12679G679GggAggG11AU.20.002421
ORF1ab/nsp12679G679GggAggG11AY.1110.000183
ORF1ab/nsp12679G679GggAggG11AY.20.000356
ORF1ab/nsp12679G679delGGA---11AY.40.000002
ORF1ab/nsp12679G679VgGagTa11AY.40.000002
ORF1ab/nsp12679G679del2gGAg--11AY.4.50.000107
ORF1ab/nsp12679G679GggAggC11AY.420.00004
ORF1ab/nsp12679G679VgGagTa11AY.430.000004
ORF1ab/nsp12679G679GggAggG11AY.46.40.000165
ORF1ab/nsp12679G679XGgaTga11AY.470.000031
ORF1ab/nsp12679G679GggAggG11AY.470.000031
ORF1ab/nsp12679G679GggAggG11AY.560.001605
ORF1ab/nsp12679G679GggAggC11AY.670.000464
ORF1ab/nsp12679G679RGgaCga11AY.98.10.000048
ORF1ab/nsp12679G679GggAggG11AY.98.10.000048
ORF1ab/nsp12679G679GggAggC11AY.99.20.000092
ORF1ab/nsp12679G679VgGagTa11B0.000128
ORF1ab/nsp12679G679GggAggC11B0.000128
ORF1ab/nsp12679G679RGgaAga11B0.000128
ORF1ab/nsp12679G679VgGagTa11B.10.000009
ORF1ab/nsp12679G679AgGAgCC11B.1.10.000018
ORF1ab/nsp12679G679GggAggG11B.1.1.1210.002427
ORF1ab/nsp12679G679GggAggG11B.1.1.1530.001095
ORF1ab/nsp12679G679GggAggC11B.1.1.1610.003534
ORF1ab/nsp12679G679GggAggG11B.1.1.2770.000759
ORF1ab/nsp12679G679del1GgATg-11B.1.1.3060.000438
ORF1ab/nsp12679G679GggAggG11B.1.1.3710.010417
ORF1ab/nsp12679G679WGgATgG11B.1.1.70.000001
ORF1ab/nsp12679G679VgGagTa11B.1.1.70.000001
ORF1ab/nsp12679G679AgGagCa11B.1.1.80.003584
ORF1ab/nsp12679G679GggAggG11B.1.1600.000031
ORF1ab/nsp12679G679delGGA---11B.1.160.230.004831
ORF1ab/nsp12679G679delGGA---11B.1.1770.000013
ORF1ab/nsp12679G679delGGA---11B.1.177.540.000606
ORF1ab/nsp12679G679GggAggG11B.1.177.690.001484
ORF1ab/nsp12679G679XGgaTga11B.1.177.730.000566
ORF1ab/nsp12679G679GggAggC11B.1.177.730.000566
ORF1ab/nsp12679G679VgGagTa11B.1.20.000009
ORF1ab/nsp12679G679del1Gga-ga11B.1.20.000009
ORF1ab/nsp12679G679GggAggG11B.1.221.30.000833
ORF1ab/nsp12679G679GggAggG11B.1.2340.000132
ORF1ab/nsp12679G679VgGagTa11B.1.2400.000216
ORF1ab/nsp12679G679GggAggG11B.1.2400.000216
ORF1ab/nsp12679G679GggAggG11B.1.2430.00007
ORF1ab/nsp12679G679XGgaTga11B.1.2600.003344
ORF1ab/nsp12679G679GggAggG11B.1.36.290.000517
ORF1ab/nsp12679G679XGgaTga11B.1.3690.000285
ORF1ab/nsp12679G679VgGagTa11B.1.3980.002976
ORF1ab/nsp12679G679VgGagTa11B.1.4590.004082
ORF1ab/nsp12679G679GggAggC11B.1.4730.019231
ORF1ab/nsp12679G679RGgaCga11B.1.5250.000113
ORF1ab/nsp12679G679XGgaTga11B.1.5370.02
ORF1ab/nsp12679G679GggAggG11B.1.5820.000491
ORF1ab/nsp12679G679EgGagAa11B.1.5960.000087
ORF1ab/nsp12679G679GggAggG11B.1.6090.000479
ORF1ab/nsp12679G679GggAggC11B.1.617.10.000129
ORF1ab/nsp12679G679delGGA---11B.1.617.20.000004
ORF1ab/nsp12679G679XGgaTga11B.1.617.20.000004
ORF1ab/nsp12679G679EgGAgAG11B.1.617.20.000004
ORF1ab/nsp12679G679GggAggG11B.1.6210.000089
ORF1ab/nsp12679G679XGgaTga11B.60.00091
ORF1ab/nsp12679G679RGgaAga11D.20.000075
ORF1ab/nsp12679G679GggAggT11P.1.140.000048
ORF1ab/nsp12679G679GggAggG11P.20.000187
ORF1ab/nsp12679G679delGGA---11U.30.003861