CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 666 | M666I | M5058I | nonsyn | atG | atT | 6311 | 6006 | 0.951672 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666I | M5058I | nonsyn | atG | atA | 6311 | 253 | 0.0400887 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666I | M5058I | nonsyn | atG | atC | 6311 | 52 | 0.00823958 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666V | M5058V | nonsyn | Atg | Gtg | 1255 | 1254 | 0.999203 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666V | M5058V | nonsyn | AtG | GtA | 1255 | 1 | 0.000796813 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666T | M5058T | nonsyn | aTg | aCg | 461 | 458 | 0.993492 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666T | M5058T | nonsyn | aTG | aCT | 461 | 3 | 0.00650759 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666L | M5058L | nonsyn | Atg | Ctg | 84 | 51 | 0.607143 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666L | M5058L | nonsyn | Atg | Ttg | 84 | 33 | 0.392857 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666del | M5058del | del | ATG | --- | 7 | 7 | 1 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666R | M5058R | nonsyn | aTg | aGg | 4 | 4 | 1 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666K | M5058K | nonsyn | aTg | aAg | 4 | 3 | 0.75 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666K | M5058K | nonsyn | aTG | aAA | 4 | 1 | 0.25 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666N | M5058N | nonsyn | aTG | aAT | 3 | 3 | 1 | 15436-15438 |
ORF1ab/nsp12 | 666 | M666del1 | M5058del1 | del | ATg | G-g | 1 | 1 | 1 | 15436-15438 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 6006 | 6311 | All | 0.001149 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 253 | 6311 | All | 0.000048 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 52 | 6311 | All | 0.00001 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2315 | 2315 | B.1.36.18 | 0.972689 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1441 | 1441 | B.1.1.50 | 0.978276 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1254 | 1255 | All | 0.00024 |
ORF1ab/nsp12 | 666 | M666V | AtG | GtA | 1 | 1255 | All | 0 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 688 | 688 | AY.25 | 0.004138 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 458 | 461 | All | 0.000088 |
ORF1ab/nsp12 | 666 | M666T | aTG | aCT | 3 | 461 | All | 0.000001 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 356 | 356 | B.1.223 | 0.988889 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 248 | 257 | B.1 | 0.002272 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 8 | 257 | B.1 | 0.000073 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 1 | 257 | B.1 | 0.000009 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 255 | 255 | B.1.411 | 0.944444 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 206 | 237 | AY.3 | 0.002049 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 31 | 237 | AY.3 | 0.000308 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 144 | 230 | AY.4 | 0.000224 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 86 | 230 | AY.4 | 0.000134 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 223 | 223 | AY.4 | 0.000347 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 218 | 218 | AY.29 | 0.003439 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 144 | 163 | B.1.617.2 | 0.000542 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 16 | 163 | B.1.617.2 | 0.00006 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 3 | 163 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 157 | 157 | B.1.532 | 0.975155 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 150 | 150 | C.2.1 | 1 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 89 | 90 | B.1.177 | 0.001172 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 1 | 90 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 51 | 84 | All | 0.00001 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 33 | 84 | All | 0.000006 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 73 | 73 | AY.5 | 0.001507 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 45 | 61 | B.1.1.7 | 0.00004 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 12 | 61 | B.1.1.7 | 0.000011 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 4 | 61 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 46 | 49 | B.1.2 | 0.000405 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 3 | 49 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 31 | 47 | AY.43 | 0.000137 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 15 | 47 | AY.43 | 0.000066 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 1 | 47 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 40 | 40 | B.1.243 | 0.002783 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 38 | 38 | B.1.591 | 0.404255 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 38 | 38 | C.16 | 0.040297 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 37 | 37 | C.2 | 0.596774 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 36 | 36 | AY.84 | 0.015748 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 35 | 35 | B.1.1.7 | 0.000031 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 23 | 31 | AY.44 | 0.00014 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 6 | 31 | AY.44 | 0.000037 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 2 | 31 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 26 | 29 | AY.20 | 0.00101 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 3 | 29 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 25 | 25 | AY.120 | 0.000929 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 22 | 22 | B.1.240 | 0.004742 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 21 | 21 | B.1.1.214 | 0.001165 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 18 | 19 | AY.6 | 0.00074 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 19 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 19 | 19 | B.1.1.306 | 0.00833 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 18 | 18 | B.1.1 | 0.000327 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 13 | 14 | AY.25 | 0.000078 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 14 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 14 | 14 | AY.33 | 0.000935 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 12 | 14 | AY.5 | 0.000248 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 2 | 14 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 8 | 12 | AY.103 | 0.00005 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 4 | 12 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 11 | 12 | B.1.160 | 0.000343 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 12 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 9 | 11 | AY.102 | 0.000239 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 2 | 11 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 10 | 11 | B | 0.001278 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 11 | B | 0.000128 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 7 | 11 | B.1.1.7 | 0.000006 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 4 | 11 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 11 | 11 | B.1.240 | 0.002371 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 7 | 10 | B.1.1.519 | 0.000278 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 3 | 10 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 10 | 10 | B.1.409 | 0.007812 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 9 | 9 | B.1.1.305 | 0.034749 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 8 | 9 | B.1.258 | 0.000532 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 9 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 8 | 8 | AY.29.1 | 0.001764 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp12 | 666 | M666del | ATG | --- | 7 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 6 | 7 | AY.29 | 0.000095 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 7 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 7 | 7 | B.1.1.434 | 0.00244 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 5 | 6 | AY.100 | 0.00023 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 6 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 6 | 6 | B.1.1.216 | 0.005343 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 4 | 6 | B.1.1.27 | 0.022599 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 6 | B.1.1.27 | 0.011299 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 5 | 6 | B.1.258.17 | 0.00052 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 1 | 6 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 6 | 6 | B.1.428 | 0.006122 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 3 | 5 | AY.4 | 0.000005 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 2 | 5 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp12 | 666 | M666del | ATG | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 4 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 666 | M666V | AtG | GtA | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 5 | 5 | B.1.428 | 0.005102 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 3 | 5 | B.1.637 | 0.000219 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 5 | B.1.637 | 0.000146 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp12 | 666 | M666R | aTg | aGg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 666 | M666K | aTg | aAg | 3 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 666 | M666K | aTG | aAA | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 3 | 4 | B.1.351 | 0.000089 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 4 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 4 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 2 | 4 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 4 | 4 | B.1.36.17 | 0.001976 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 4 | 4 | B.1.426 | 0.004036 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp12 | 666 | M666N | aTG | aAT | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 3 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 1 | 3 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 3 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 3 | 3 | B.1.1.204 | 0.009119 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 2 | 3 | B.1.1.37 | 0.000386 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 3 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 3 | 3 | B.1.235 | 0.007557 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 3 | B.1.596 | 0.000174 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 3 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 2 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 2 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 2 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 2 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.1.115 | 0.017857 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.1.144 | 0.057143 |
ORF1ab/nsp12 | 666 | M666T | aTG | aCT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp12 | 666 | M666K | aTg | aAg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.115 | 0.043478 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 666 | M666del1 | ATg | G-g | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 666 | M666N | aTG | aAT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 666 | M666K | aTG | aAA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 666 | M666R | aTg | aGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 666 | M666N | aTG | aAT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 666 | M666K | aTg | aAg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 666 | M666N | aTG | aAT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 666 | M666R | aTg | aGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 666 | M666del | ATG | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 666 | M666R | aTg | aGg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp12 | 666 | M666T | aTG | aCT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 666 | M666R | aTg | aGg | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 666 | M666V | Atg | Gtg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 666 | M666del1 | ATg | G-g | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ctg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 666 | M666del | ATG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp12 | 666 | M666T | aTg | aCg | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp12 | 666 | M666I | atG | atA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp12 | 666 | M666L | Atg | Ttg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 666 | M666I | atG | atC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp12 | 666 | M666I | atG | atT | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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