CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 663 & Codon = Ctg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12663L663LL5055LsynTtgCtg3212250.70093515427-15429

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12663L663LTtgCtg225321All0.000043
ORF1ab/nsp12663L663LTtgCtg126126B.1.5440.759036
ORF1ab/nsp12663L663LTtgCtg2048B.1.1.70.000018
ORF1ab/nsp12663L663LTtgCtg528AY.40.000008
ORF1ab/nsp12663L663LTtgCtg218B.1.20.000018
ORF1ab/nsp12663L663LTtgCtg1213AY.440.000073
ORF1ab/nsp12663L663LTtgCtg1212B.1.177.810.002272
ORF1ab/nsp12663L663LTtgCtg910B.10.000082
ORF1ab/nsp12663L663LTtgCtg69B.1.617.20.000023
ORF1ab/nsp12663L663LTtgCtg44B.1.1340.021858
ORF1ab/nsp12663L663LTtgCtg44P.1.100.001078
ORF1ab/nsp12663L663LTtgCtg33AY.1090.002219
ORF1ab/nsp12663L663LTtgCtg12AY.1030.000006
ORF1ab/nsp12663L663LTtgCtg22AY.430.000009
ORF1ab/nsp12663L663LTtgCtg22AY.50.000041
ORF1ab/nsp12663L663LTtgCtg22P.1.70.000639
ORF1ab/nsp12663L663LTtgCtg11A.190.009434
ORF1ab/nsp12663L663LTtgCtg11A.20.000662
ORF1ab/nsp12663L663LTtgCtg11AY.1190.000035
ORF1ab/nsp12663L663LTtgCtg11AY.250.000006
ORF1ab/nsp12663L663LTtgCtg11AY.290.000016
ORF1ab/nsp12663L663LTtgCtg11AY.30.00001
ORF1ab/nsp12663L663LTtgCtg11AY.380.000499
ORF1ab/nsp12663L663LTtgCtg11AY.520.000814
ORF1ab/nsp12663L663LTtgCtg11B.1.1.5190.00004
ORF1ab/nsp12663L663LTtgCtg11B.1.177.230.003236
ORF1ab/nsp12663L663LTtgCtg11B.1.4290.000024
ORF1ab/nsp12663L663LTtgCtg11B.1.5900.004545
ORF1ab/nsp12663L663LTtgCtg11C.36.30.000567
ORF1ab/nsp12663L663LTtgCtg11P.10.000016
ORF1ab/nsp12663L663LTtgCtg11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.