CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 640 & Codon = cAc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12640R640HR5032HnonsyncGccAc7171115358-15360

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12640R640HcGccAc7171All0.000014
ORF1ab/nsp12640R640HcGccAc1616B.1.617.20.00006
ORF1ab/nsp12640R640HcGccAc77AY.430.000031
ORF1ab/nsp12640R640HcGccAc66B.1.1.70.000005
ORF1ab/nsp12640R640HcGccAc55B.1.20.000044
ORF1ab/nsp12640R640HcGccAc44AY.40.000006
ORF1ab/nsp12640R640HcGccAc33AY.90.000203
ORF1ab/nsp12640R640HcGccAc22AY.200.000078
ORF1ab/nsp12640R640HcGccAc22AY.440.000012
ORF1ab/nsp12640R640HcGccAc22B.1.1.1700.002494
ORF1ab/nsp12640R640HcGccAc22B.1.1770.000026
ORF1ab/nsp12640R640HcGccAc22B.1.258.210.015504
ORF1ab/nsp12640R640HcGccAc22B.1.5650.001621
ORF1ab/nsp12640R640HcGccAc11A.20.000662
ORF1ab/nsp12640R640HcGccAc11AY.1030.000006
ORF1ab/nsp12640R640HcGccAc11AY.1200.000037
ORF1ab/nsp12640R640HcGccAc11AY.250.000006
ORF1ab/nsp12640R640HcGccAc11AY.260.000028
ORF1ab/nsp12640R640HcGccAc11AY.390.000025
ORF1ab/nsp12640R640HcGccAc11AY.420.00004
ORF1ab/nsp12640R640HcGccAc11AY.450.000122
ORF1ab/nsp12640R640HcGccAc11AY.690.000187
ORF1ab/nsp12640R640HcGccAc11AY.750.000056
ORF1ab/nsp12640R640HcGccAc11B.10.000009
ORF1ab/nsp12640R640HcGccAc11B.1.1.1410.002012
ORF1ab/nsp12640R640HcGccAc11B.1.1.250.000569
ORF1ab/nsp12640R640HcGccAc11B.1.1460.004237
ORF1ab/nsp12640R640HcGccAc11B.1.36.290.000517
ORF1ab/nsp12640R640HcGccAc11B.1.466.20.000391
ORF1ab/nsp12640R640HcGccAc11B.1.5950.000261
ORF1ab/nsp12640R640HcGccAc11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.