CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 638 | L638F | L5030F | nonsyn | Ctt | Ttt | 5690 | 5690 | 1 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638L | L5030L | syn | ctT | ctC | 543 | 284 | 0.52302 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638L | L5030L | syn | ctT | ctA | 543 | 244 | 0.449355 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638L | L5030L | syn | ctT | ctG | 543 | 15 | 0.0276243 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638I | L5030I | nonsyn | Ctt | Att | 17 | 17 | 1 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638del | L5030del | del | CTT | --- | 17 | 17 | 1 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638P | L5030P | nonsyn | cTt | cCt | 4 | 3 | 0.75 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638del1 | L5030del1 | del | Ctt | -tt | 4 | 2 | 0.5 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638P | L5030P | nonsyn | cTT | cCC | 4 | 1 | 0.25 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638del1 | L5030del1 | del | cTt | c-t | 4 | 1 | 0.25 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638del1 | L5030del1 | del | cTT | c-C | 4 | 1 | 0.25 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638R | L5030R | nonsyn | cTt | cGt | 2 | 2 | 1 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638V | L5030V | nonsyn | Ctt | Gtt | 2 | 2 | 1 | 15352-15354 |
ORF1ab/nsp12 | 638 | L638C | L5030C | nonsyn | CTT | TGC | 1 | 1 | 1 | 15352-15354 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5690 | 5690 | All | 0.001088 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1287 | 1287 | B.1.2 | 0.011333 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 676 | 676 | B.1.1.7 | 0.000605 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 552 | 552 | B.1.177 | 0.007269 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 284 | 543 | All | 0.000054 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 244 | 543 | All | 0.000047 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctG | 15 | 543 | All | 0.000003 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 491 | 491 | AY.29 | 0.007745 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 329 | 329 | AY.4 | 0.000512 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 213 | 213 | B.1.429 | 0.005012 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 197 | 197 | B.1.162 | 0.98995 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 142 | 142 | D.2 | 0.010656 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 141 | 141 | B.1.497 | 0.044381 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 131 | 131 | B.1 | 0.0012 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 105 | 105 | AY.26 | 0.002973 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 96 | 96 | AY.25 | 0.000577 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 89 | 89 | AY.43 | 0.000394 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 79 | 79 | B.1.617.2 | 0.000297 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 74 | 74 | AZ.3 | 0.112462 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 72 | 72 | AY.103 | 0.000447 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 72 | 72 | B.1.526 | 0.001692 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 70 | 70 | B.1.550 | 0.958904 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 58 | 58 | AY.44 | 0.000353 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 56 | 56 | B.1.370 | 0.448 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 38 | 45 | B.1.1.7 | 0.000034 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 7 | 45 | B.1.1.7 | 0.000006 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 45 | 45 | P.1 | 0.000709 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 43 | 43 | AY.39 | 0.001063 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 41 | 41 | B.1.596 | 0.003573 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 40 | 40 | AY.5 | 0.000826 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 22 | 38 | B.1.617.2 | 0.000083 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 15 | 38 | B.1.617.2 | 0.000056 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctG | 1 | 38 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 31 | 33 | B.1.2 | 0.000273 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 2 | 33 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 31 | 31 | AY.47 | 0.000964 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 29 | 29 | B.1.1 | 0.000526 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 28 | 28 | AY.3 | 0.000278 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 24 | 24 | B.1.1.291 | 0.017817 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 24 | 24 | B.1.351.2 | 0.007262 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 21 | 21 | AY.23 | 0.001465 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 14 | 21 | AY.4 | 0.000022 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 4 | 21 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctG | 3 | 21 | AY.4 | 0.000005 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 19 | 19 | B.1.177.81 | 0.003597 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 18 | 18 | AY.118 | 0.001128 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp12 | 638 | L638del | CTT | --- | 17 | 17 | All | 0.000003 |
ORF1ab/nsp12 | 638 | L638I | Ctt | Att | 17 | 17 | All | 0.000003 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 17 | 17 | B.1.160 | 0.00053 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 17 | 17 | B.1.93 | 0.015873 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 16 | 16 | AY.100 | 0.000736 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 16 | 16 | AY.120.1 | 0.005136 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 15 | 15 | B.1.258 | 0.000998 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 15 | 15 | B.1.351 | 0.000446 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 14 | 14 | B.1.177.57 | 0.003934 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 14 | 14 | B.1.177.82 | 0.006683 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 14 | 14 | B.1.234 | 0.001847 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 13 | 13 | B.1.177.15 | 0.008202 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 11 | 11 | AY.33 | 0.000735 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 11 | 11 | B.1.177.36 | 0.177419 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 9 | 9 | B.1.177.21 | 0.000688 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 8 | 8 | AY.29.1 | 0.001764 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 5 | 8 | AY.43 | 0.000022 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 2 | 8 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctG | 1 | 8 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctG | 6 | 8 | AY.44 | 0.000037 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 2 | 8 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 5 | 8 | B.1 | 0.000046 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 3 | 8 | B.1 | 0.000027 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 8 | 8 | B.1.1.304 | 0.022472 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp12 | 638 | L638del | CTT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 8 | 8 | B.1.177.79 | 0.018735 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 7 | 7 | B.1.1.434 | 0.00244 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 7 | 7 | B.1.36.8 | 0.007 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp12 | 638 | L638I | Ctt | Att | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 6 | 6 | B.1.1.311 | 0.002149 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 5 | 6 | B.1.351 | 0.000149 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 6 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 6 | 6 | B.1.36.18 | 0.002521 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 6 | 6 | B.1.582 | 0.002944 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5 | 5 | B.1.1.270 | 0.051546 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 3 | 5 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctG | 2 | 5 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp12 | 638 | L638P | cTt | cCt | 3 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 638 | L638del1 | Ctt | -tt | 2 | 4 | All | 0 |
ORF1ab/nsp12 | 638 | L638del1 | cTT | c-C | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 638 | L638P | cTT | cCC | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 638 | L638del1 | cTt | c-t | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | AT.1 | 0.020513 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 3 | 4 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 4 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | B.1.565 | 0.003241 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 638 | L638I | Ctt | Att | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.1.217 | 0.010909 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp12 | 638 | L638P | cTt | cCt | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 638 | L638P | cTT | cCC | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.113 | 0.046875 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp12 | 638 | L638V | Ctt | Gtt | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 638 | L638R | cTt | cGt | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp12 | 638 | L638I | Ctt | Att | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 638 | L638del | CTT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.1.297 | 0.004474 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp12 | 638 | L638del | CTT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.258.20 | 0.031746 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 2 | 2 | B.1.258.22 | 0.005333 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.306 | 0.011429 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | K.3 | 0.012346 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 638 | L638I | Ctt | Att | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp12 | 638 | L638C | CTT | TGC | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp12 | 638 | L638del1 | Ctt | -tt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp12 | 638 | L638V | Ctt | Gtt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 638 | L638P | cTt | cCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 638 | L638C | CTT | TGC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 638 | L638I | Ctt | Att | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 638 | L638V | Ctt | Gtt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 638 | L638I | Ctt | Att | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 638 | L638R | cTt | cGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctG | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.407 | 0.041667 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.435 | 0.034483 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 638 | L638R | cTt | cGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 638 | L638del1 | cTT | c-C | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 638 | L638del | CTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.127 | 0.002198 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 638 | L638del | CTT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 638 | L638del | CTT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp12 | 638 | L638del | CTT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp12 | 638 | L638del1 | Ctt | -tt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp12 | 638 | L638del1 | cTt | c-t | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp12 | 638 | L638I | Ctt | Att | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.302 | 0.013333 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.450 | 0.011364 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctG | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp12 | 638 | L638del | CTT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp12 | 638 | L638I | Ctt | Att | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctC | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 638 | L638I | Ctt | Att | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 638 | L638L | ctT | ctA | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp12 | 638 | L638F | Ctt | Ttt | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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