CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 613 & Codon = Tac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12613H613YH5005YnonsynCacTac22506212770.94539215277-15279

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12613H613YCacTac2127722506All0.004069
ORF1ab/nsp12613H613YCacTac1770617711AY.40.027558
ORF1ab/nsp12613H613YCacTac716716B.1.617.20.002696
ORF1ab/nsp12613H613YCacTac254254AY.50.005245
ORF1ab/nsp12613H613YCacTac242242AY.390.00598
ORF1ab/nsp12613H613YCacTac195195AY.290.003076
ORF1ab/nsp12613H613YCacTac172172AY.430.000762
ORF1ab/nsp12613H613YCacTac9797AY.1030.000602
ORF1ab/nsp12613H613YCacTac9191AY.60.003743
ORF1ab/nsp12613H613YCacTac8787AY.440.00053
ORF1ab/nsp12613H613YCacTac8080B.1.3490.057184
ORF1ab/nsp12613H613YCacTac6464AY.250.000385
ORF1ab/nsp12613H613YCacTac6363B.1.20.000555
ORF1ab/nsp12613H613YCacTac5858B.1.1770.000764
ORF1ab/nsp12613H613YCacTac5858B.1.61
ORF1ab/nsp12613H613YCacTac4850B.10.00044
ORF1ab/nsp12613H613YCacTac4444B.1.10.000798
ORF1ab/nsp12613H613YCacTac4343AY.1000.001978
ORF1ab/nsp12613H613YCacTac4343AY.30.000428
ORF1ab/nsp12613H613YCacTac4343B.1.1110.050529
ORF1ab/nsp12613H613YCacTac4242B.1.2051
ORF1ab/nsp12613H613YCacTac3939P.10.000614
ORF1ab/nsp12613H613YCacTac3838B.1.36.290.019659
ORF1ab/nsp12613H613YCacTac3535B.1.258.140.034314
ORF1ab/nsp12613H613YCacTac3434AY.10.013455
ORF1ab/nsp12613H613YCacTac3030AY.980.00237
ORF1ab/nsp12613H613YCacTac2929AY.1020.000769
ORF1ab/nsp12613H613YCacTac2929AY.1200.001078
ORF1ab/nsp12613H613YCacTac2929B.60.026388
ORF1ab/nsp12613H613YCacTac2828AY.410.00823
ORF1ab/nsp12613H613YCacTac2222AY.4.20.000477
ORF1ab/nsp12613H613YCacTac2020AY.98.10.000969
ORF1ab/nsp12613H613YCacTac1919B.1.4290.000447
ORF1ab/nsp12613H613YCacTac1818AY.330.001202
ORF1ab/nsp12613H613YCacTac1717B.1.1.3170.006999
ORF1ab/nsp12613H613YCacTac1616B.1.1.2140.000887
ORF1ab/nsp12613H613YCacTac1616B.1.3510.000476
ORF1ab/nsp12613H613YCacTac1515AY.260.000425
ORF1ab/nsp12613H613YCacTac1515AY.420.000603
ORF1ab/nsp12613H613YCacTac1515AY.9.20.000551
ORF1ab/nsp12613H613YCacTac1515B.1.2430.001044
ORF1ab/nsp12613H613YCacTac1515B.1.258.170.00156
ORF1ab/nsp12613H613YCacTac1515B.1.5260.000353
ORF1ab/nsp12613H613YCacTac1515B.1.6370.001096
ORF1ab/nsp12613H613YCacTac1414AY.3.10.001194
ORF1ab/nsp12613H613YCacTac1414AY.350.003263
ORF1ab/nsp12613H613YCacTac1313B.1.1.390.006626
ORF1ab/nsp12613H613YCacTac1313B.1.177.210.000994
ORF1ab/nsp12613H613YCacTac1212B.1.2150.115385
ORF1ab/nsp12613H613YCacTac1111AY.1190.000388
ORF1ab/nsp12613H613YCacTac1010AY.1130.001424
ORF1ab/nsp12613H613YCacTac1010AY.200.000389
ORF1ab/nsp12613H613YCacTac1010B.1.1600.000312
ORF1ab/nsp12613H613YCacTac1010B.1.2340.001319
ORF1ab/nsp12613H613YCacTac99AY.160.003417
ORF1ab/nsp12613H613YCacTac99AY.750.000504
ORF1ab/nsp12613H613YCacTac99AY.990.009444
ORF1ab/nsp12613H613YCacTac99B.1.1.10.00294
ORF1ab/nsp12613H613YCacTac99B.1.360.001313
ORF1ab/nsp12613H613YCacTac99B.1.5090.007792
ORF1ab/nsp12613H613YCacTac99B.6.60.008
ORF1ab/nsp12613H613YCacTac88AY.590.004237
ORF1ab/nsp12613H613YCacTac88B.1.1.5190.000318
ORF1ab/nsp12613H613YCacTac88P.1.140.000382
ORF1ab/nsp12613H613YCacTac77B.1.3970.033981
ORF1ab/nsp12613H613YCacTac77B.1.466.20.002739
ORF1ab/nsp12613H613YCacTac77B.1.910.014523
ORF1ab/nsp12613H613YCacTac66AY.230.000418
ORF1ab/nsp12613H613YCacTac66AY.520.004886
ORF1ab/nsp12613H613YCacTac66AY.540.000572
ORF1ab/nsp12613H613YCacTac66B.1.1.630.002315
ORF1ab/nsp12613H613YCacTac66B.1.3690.001711
ORF1ab/nsp12613H613YCacTac66B.1.617.10.000774
ORF1ab/nsp12613H613YCacTac55AY.1170.000423
ORF1ab/nsp12613H613YCacTac55AY.270.000324
ORF1ab/nsp12613H613YCacTac55AY.39.10.000198
ORF1ab/nsp12613H613YCacTac55AY.470.000156
ORF1ab/nsp12613H613YCacTac55B0.000639
ORF1ab/nsp12613H613YCacTac55B.1.1280.003177
ORF1ab/nsp12613H613YCacTac55B.1.177.40.001055
ORF1ab/nsp12613H613YCacTac55B.1.177.600.001092
ORF1ab/nsp12613H613YCacTac55B.1.4130.021277
ORF1ab/nsp12613H613YCacTac55B.1.4220.004062
ORF1ab/nsp12613H613YCacTac55B.1.4650.019011
ORF1ab/nsp12613H613YCacTac55P.1.170.000809
ORF1ab/nsp12613H613YCacTac44A.2.50.001996
ORF1ab/nsp12613H613YCacTac44AY.360.000593
ORF1ab/nsp12613H613YCacTac44AY.4.50.00043
ORF1ab/nsp12613H613YCacTac44AY.99.10.006211
ORF1ab/nsp12613H613YCacTac44B.1.1.2220.000816
ORF1ab/nsp12613H613YCacTac44B.1.177.810.000757
ORF1ab/nsp12613H613YCacTac44B.1.2580.000266
ORF1ab/nsp12613H613YCacTac44B.1.4270.000202
ORF1ab/nsp12613H613YCacTac44B.1.5250.000453
ORF1ab/nsp12613H613YCacTac44B.1.5960.000349
ORF1ab/nsp12613H613YCacTac44P.1.120.001936
ORF1ab/nsp12613H613YCacTac33A.10.000846
ORF1ab/nsp12613H613YCacTac33AY.1070.001398
ORF1ab/nsp12613H613YCacTac33AY.1110.000549
ORF1ab/nsp12613H613YCacTac33AY.1160.00086
ORF1ab/nsp12613H613YCacTac33AY.140.000264
ORF1ab/nsp12613H613YCacTac33AY.20.001068
ORF1ab/nsp12613H613YCacTac33AY.29.10.000662
ORF1ab/nsp12613H613YCacTac33AY.450.000365
ORF1ab/nsp12613H613YCacTac33AY.46.40.000494
ORF1ab/nsp12613H613YCacTac33AY.5.30.001012
ORF1ab/nsp12613H613YCacTac33AY.75.10.000541
ORF1ab/nsp12613H613YCacTac33AY.910.002191
ORF1ab/nsp12613H613YCacTac33B.1.1.2160.002671
ORF1ab/nsp12613H613YCacTac33B.1.1.4340.001046
ORF1ab/nsp12613H613YCacTac33B.1.1.5280.014423
ORF1ab/nsp12613H613YCacTac33B.1.177.320.004049
ORF1ab/nsp12613H613YCacTac33B.1.177.540.001819
ORF1ab/nsp12613H613YCacTac33B.1.4700.004213
ORF1ab/nsp12613H613YCacTac33B.1.5070.033708
ORF1ab/nsp12613H613YCacTac33B.1.5610.001191
ORF1ab/nsp12613H613YCacTac33C.370.000348
ORF1ab/nsp12613H613YCacTac33P.1.150.000697
ORF1ab/nsp12613H613YCacTac33R.10.00027
ORF1ab/nsp12613H613YCacTac22A.2.5.30.020619
ORF1ab/nsp12613H613YCacTac22AY.1010.000981
ORF1ab/nsp12613H613YCacTac22AY.1060.00067
ORF1ab/nsp12613H613YCacTac22AY.120.000632
ORF1ab/nsp12613H613YCacTac22AY.300.000791
ORF1ab/nsp12613H613YCacTac22AY.340.000194
ORF1ab/nsp12613H613YCacTac22AY.400.001929
ORF1ab/nsp12613H613YCacTac22AY.460.000208
ORF1ab/nsp12613H613YCacTac22AY.46.60.000144
ORF1ab/nsp12613H613YCacTac22AY.480.00093
ORF1ab/nsp12613H613YCacTac22AY.5.40.000553
ORF1ab/nsp12613H613YCacTac22AY.610.00021
ORF1ab/nsp12613H613YCacTac22AY.690.000373
ORF1ab/nsp12613H613YCacTac22AY.730.001331
ORF1ab/nsp12613H613YCacTac22AY.740.000231
ORF1ab/nsp12613H613YCacTac22AY.790.002421
ORF1ab/nsp12613H613YCacTac22AY.850.000854
ORF1ab/nsp12613H613YCacTac22AY.930.000546
ORF1ab/nsp12613H613YCacTac22B.1.1.3070.005063
ORF1ab/nsp12613H613YCacTac22B.1.1.500.001358
ORF1ab/nsp12613H613YCacTac22B.1.1570.00597
ORF1ab/nsp12613H613YCacTac22B.1.177.560.001335
ORF1ab/nsp12613H613YCacTac22B.1.177.750.002081
ORF1ab/nsp12613H613YCacTac22B.1.177.830.002963
ORF1ab/nsp12613H613YCacTac22B.1.2140.007326
ORF1ab/nsp12613H613YCacTac22B.1.2400.000431
ORF1ab/nsp12613H613YCacTac22B.1.351.20.000605
ORF1ab/nsp12613H613YCacTac22B.1.36.190.018519
ORF1ab/nsp12613H613YCacTac22B.1.36.80.002
ORF1ab/nsp12613H613YCacTac22B.1.3700.016
ORF1ab/nsp12613H613YCacTac22B.1.3750.001639
ORF1ab/nsp12613H613YCacTac22B.1.4000.000858
ORF1ab/nsp12613H613YCacTac22B.1.4280.002041
ORF1ab/nsp12613H613YCacTac22B.1.5230.004902
ORF1ab/nsp12613H613YCacTac22B.1.6210.000177
ORF1ab/nsp12613H613YCacTac22B.1.6280.000705
ORF1ab/nsp12613H613YCacTac22P.1.70.000639
ORF1ab/nsp12613H613YCacTac11A0.000387
ORF1ab/nsp12613H613YCacTac11A.2.5.10.004808
ORF1ab/nsp12613H613YCacTac11AE.80.000489
ORF1ab/nsp12613H613YCacTac11AY.1050.000643
ORF1ab/nsp12613H613YCacTac11AY.1100.000113
ORF1ab/nsp12613H613YCacTac11AY.1140.000231
ORF1ab/nsp12613H613YCacTac11AY.116.10.000311
ORF1ab/nsp12613H613YCacTac11AY.1180.000063
ORF1ab/nsp12613H613YCacTac11AY.120.10.000321
ORF1ab/nsp12613H613YCacTac11AY.1210.000135
ORF1ab/nsp12613H613YCacTac11AY.130.000161
ORF1ab/nsp12613H613YCacTac11AY.190.00114
ORF1ab/nsp12613H613YCacTac11AY.23.10.000417
ORF1ab/nsp12613H613YCacTac11AY.34.10.00051
ORF1ab/nsp12613H613YCacTac11AY.39.20.001541
ORF1ab/nsp12613H613YCacTac11AY.4.2.10.000149
ORF1ab/nsp12613H613YCacTac11AY.4.40.000409
ORF1ab/nsp12613H613YCacTac11AY.46.10.001027
ORF1ab/nsp12613H613YCacTac11AY.46.20.000635
ORF1ab/nsp12613H613YCacTac11AY.46.50.000198
ORF1ab/nsp12613H613YCacTac11AY.560.001605
ORF1ab/nsp12613H613YCacTac11AY.570.000656
ORF1ab/nsp12613H613YCacTac11AY.580.000907
ORF1ab/nsp12613H613YCacTac11AY.670.000464
ORF1ab/nsp12613H613YCacTac11AY.680.000274
ORF1ab/nsp12613H613YCacTac11AY.70.000196
ORF1ab/nsp12613H613YCacTac11AY.7.10.000113
ORF1ab/nsp12613H613YCacTac11AY.780.001541
ORF1ab/nsp12613H613YCacTac11AY.80.000606
ORF1ab/nsp12613H613YCacTac11AY.820.001357
ORF1ab/nsp12613H613YCacTac11AY.840.000437
ORF1ab/nsp12613H613YCacTac11AY.870.000833
ORF1ab/nsp12613H613YCacTac11AY.90.000068
ORF1ab/nsp12613H613YCacTac11AY.9.10.000084
ORF1ab/nsp12613H613YCacTac11AY.900.000684
ORF1ab/nsp12613H613YCacTac11AY.99.20.000092
ORF1ab/nsp12613H613YCacTac11B.1.1.1620.029412
ORF1ab/nsp12613H613YCacTac11B.1.1.1760.000439
ORF1ab/nsp12613H613YCacTac11B.1.1.2200.001859
ORF1ab/nsp12613H613YCacTac11B.1.1.3010.001179
ORF1ab/nsp12613H613YCacTac11B.1.1.3020.002075
ORF1ab/nsp12613H613YCacTac11B.1.1.3180.000302
ORF1ab/nsp12613H613YCacTac11B.1.1.3280.016949
ORF1ab/nsp12613H613YCacTac11B.1.1.330.000421
ORF1ab/nsp12613H613YCacTac11B.1.1.3480.000796
ORF1ab/nsp12613H613YCacTac11B.1.1.3640.066667
ORF1ab/nsp12613H613YCacTac11B.1.1.3720.000689
ORF1ab/nsp12613H613YCacTac11B.1.1.3780.007299
ORF1ab/nsp12613H613YCacTac11B.1.1.3890.006061
ORF1ab/nsp12613H613YCacTac11B.1.1.3970.002252
ORF1ab/nsp12613H613YCacTac11B.1.1.40.002976
ORF1ab/nsp12613H613YCacTac11B.1.1.4170.002703
ORF1ab/nsp12613H613YCacTac11B.1.1.4240.045455
ORF1ab/nsp12613H613YCacTac11B.1.1.5230.001563
ORF1ab/nsp12613H613YCacTac11B.1.110.30.000718
ORF1ab/nsp12613H613YCacTac11B.1.130.002375
ORF1ab/nsp12613H613YCacTac11B.1.1470.000756
ORF1ab/nsp12613H613YCacTac11B.1.160.330.004425
ORF1ab/nsp12613H613YCacTac11B.1.177.200.001517
ORF1ab/nsp12613H613YCacTac11B.1.177.350.000691
ORF1ab/nsp12613H613YCacTac11B.1.177.420.000894
ORF1ab/nsp12613H613YCacTac11B.1.177.440.000519
ORF1ab/nsp12613H613YCacTac11B.1.177.580.001332
ORF1ab/nsp12613H613YCacTac11B.1.177.860.000183
ORF1ab/nsp12613H613YCacTac11B.1.2100.002132
ORF1ab/nsp12613H613YCacTac11B.1.220.001318
ORF1ab/nsp12613H613YCacTac11B.1.2210.000071
ORF1ab/nsp12613H613YCacTac11B.1.2470.014925
ORF1ab/nsp12613H613YCacTac11B.1.2790.000514
ORF1ab/nsp12613H613YCacTac11B.1.2810.021739
ORF1ab/nsp12613H613YCacTac11B.1.3110.000275
ORF1ab/nsp12613H613YCacTac11B.1.3480.018182
ORF1ab/nsp12613H613YCacTac11B.1.36.170.000494
ORF1ab/nsp12613H613YCacTac11B.1.36.200.016949
ORF1ab/nsp12613H613YCacTac11B.1.36.230.016393
ORF1ab/nsp12613H613YCacTac11B.1.36.380.001642
ORF1ab/nsp12613H613YCacTac11B.1.3800.006623
ORF1ab/nsp12613H613YCacTac11B.1.3810.007812
ORF1ab/nsp12613H613YCacTac11B.1.3910.001127
ORF1ab/nsp12613H613YCacTac11B.1.4080.00369
ORF1ab/nsp12613H613YCacTac11B.1.4090.000781
ORF1ab/nsp12613H613YCacTac11B.1.438.10.000107
ORF1ab/nsp12613H613YCacTac11B.1.466.10.007194
ORF1ab/nsp12613H613YCacTac11B.1.5170.000427
ORF1ab/nsp12613H613YCacTac11B.1.5380.008065
ORF1ab/nsp12613H613YCacTac11B.1.5640.000426
ORF1ab/nsp12613H613YCacTac11B.1.5650.00081
ORF1ab/nsp12613H613YCacTac11B.1.5750.000303
ORF1ab/nsp12613H613YCacTac11B.1.6270.00202
ORF1ab/nsp12613H613YCacTac11B.1.80.001972
ORF1ab/nsp12613H613YCacTac11B.1.840.020833
ORF1ab/nsp12613H613YCacTac11B.200.023256
ORF1ab/nsp12613H613YCacTac11C.300.001727
ORF1ab/nsp12613H613YCacTac11C.40.01
ORF1ab/nsp12613H613YCacTac11D.20.000075
ORF1ab/nsp12613H613YCacTac11D.50.004975
ORF1ab/nsp12613H613YCacTac11P.1.130.000898
ORF1ab/nsp12613H613YCacTac11P.1.20.001156
ORF1ab/nsp12613H613YCacTac11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.