CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 613

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12613H613HH5005HsyncaCcaT11426831142683115277-15279
ORF1ab/nsp12613H613YH5005YnonsynCacTac22506212770.94539215277-15279
ORF1ab/nsp12613H613YH5005YnonsynCaCTaT2250612290.054607715277-15279
ORF1ab/nsp12613H613RH5005RnonsyncACcGT6475830.90108215277-15279
ORF1ab/nsp12613H613RH5005RnonsyncAccGc647640.098918115277-15279
ORF1ab/nsp12613H613QH5005QnonsyncaCcaA1251210.96815277-15279
ORF1ab/nsp12613H613QH5005QnonsyncaCcaG12540.03215277-15279
ORF1ab/nsp12613H613delH5005deldelCAC---3434115277-15279
ORF1ab/nsp12613H613NH5005NnonsynCacAac3232115277-15279
ORF1ab/nsp12613H613del1H5005del1delcaCca-1160.54545515277-15279
ORF1ab/nsp12613H613del1H5005del1delcAcc-c1130.27272715277-15279
ORF1ab/nsp12613H613del1H5005del1delcACc-T1110.090909115277-15279
ORF1ab/nsp12613H613del1H5005del1delCac-ac1110.090909115277-15279
ORF1ab/nsp12613H613DH5005DnonsynCacGac88115277-15279
ORF1ab/nsp12613H613LH5005LnonsyncAccTc840.515277-15279
ORF1ab/nsp12613H613LH5005LnonsyncACcTT840.515277-15279
ORF1ab/nsp12613H613AH5005AnonsynCAcGCc66115277-15279
ORF1ab/nsp12613H613del2H5005del2delcACc--11115277-15279
ORF1ab/nsp12613H613PH5005PnonsyncAccCc11115277-15279

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12613H613HcaCcaT11426831142683All0.218552
ORF1ab/nsp12613H613HcaCcaT11107521110752B.1.1.70.994371
ORF1ab/nsp12613H613YCacTac2127722506All0.004069
ORF1ab/nsp12613H613YCaCTaT122922506All0.000235
ORF1ab/nsp12613H613YCacTac1770617711AY.40.027558
ORF1ab/nsp12613H613YCaCTaT517711AY.40.000008
ORF1ab/nsp12613H613HcaCcaT78887888Q.10.996463
ORF1ab/nsp12613H613HcaCcaT68606860Q.30.994924
ORF1ab/nsp12613H613HcaCcaT45984598Q.80.758245
ORF1ab/nsp12613H613HcaCcaT29612961B.1.10.053715
ORF1ab/nsp12613H613HcaCcaT21842184Q.40.993179
ORF1ab/nsp12613H613HcaCcaT16291629Q.20.999387
ORF1ab/nsp12613H613HcaCcaT14541454B.10.013318
ORF1ab/nsp12613H613YCaCTaT12161216B.1.1.70.001089
ORF1ab/nsp12613H613HcaCcaT898898Q.70.997778
ORF1ab/nsp12613H613YCacTac716716B.1.617.20.002696
ORF1ab/nsp12613H613RcACcGT583647All0.000112
ORF1ab/nsp12613H613RcAccGc64647All0.000012
ORF1ab/nsp12613H613RcACcGT581581B.1.1.70.00052
ORF1ab/nsp12613H613HcaCcaT500500AY.40.000778
ORF1ab/nsp12613H613YCacTac254254AY.50.005245
ORF1ab/nsp12613H613YCacTac242242AY.390.00598
ORF1ab/nsp12613H613HcaCcaT214214B.1.177.730.121178
ORF1ab/nsp12613H613YCacTac195195AY.290.003076
ORF1ab/nsp12613H613YCacTac172172AY.430.000762
ORF1ab/nsp12613H613HcaCcaT151151Q.61
ORF1ab/nsp12613H613QcaCcaA121125All0.000023
ORF1ab/nsp12613H613QcaCcaG4125All0.000001
ORF1ab/nsp12613H613HcaCcaT115115AY.290.001814
ORF1ab/nsp12613H613HcaCcaT104104B.1.617.20.000392
ORF1ab/nsp12613H613YCacTac9797AY.1030.000602
ORF1ab/nsp12613H613HcaCcaT9494B.1.1770.001238
ORF1ab/nsp12613H613YCacTac9191AY.60.003743
ORF1ab/nsp12613H613YCacTac8787AY.440.00053
ORF1ab/nsp12613H613HcaCcaT8585AY.30.000845
ORF1ab/nsp12613H613HcaCcaT8383B.1.3750.068033
ORF1ab/nsp12613H613YCacTac8080B.1.3490.057184
ORF1ab/nsp12613H613HcaCcaT7979P.10.001245
ORF1ab/nsp12613H613HcaCcaT7878B.1.6370.0057
ORF1ab/nsp12613H613HcaCcaT7676B.1.20.000669
ORF1ab/nsp12613H613HcaCcaT7676B.1.360.011088
ORF1ab/nsp12613H613QcaCcaA7272B.1.20.000634
ORF1ab/nsp12613H613HcaCcaT7070AY.440.000426
ORF1ab/nsp12613H613HcaCcaT6767B.1.1.3110.023997
ORF1ab/nsp12613H613YCacTac6464AY.250.000385
ORF1ab/nsp12613H613HcaCcaT6464AY.430.000284
ORF1ab/nsp12613H613YCacTac6363B.1.20.000555
ORF1ab/nsp12613H613HcaCcaT5959Q.51
ORF1ab/nsp12613H613YCacTac5858B.1.1770.000764
ORF1ab/nsp12613H613HcaCcaT5858B.1.5260.001363
ORF1ab/nsp12613H613YCacTac5858B.1.61
ORF1ab/nsp12613H613HcaCcaT5353B.1.5760.048051
ORF1ab/nsp12613H613YCacTac4850B.10.00044
ORF1ab/nsp12613H613YCaCTaT250B.10.000018
ORF1ab/nsp12613H613HcaCcaT4646B0.005879
ORF1ab/nsp12613H613YCacTac4444B.1.10.000798
ORF1ab/nsp12613H613YCacTac4343AY.1000.001978
ORF1ab/nsp12613H613YCacTac4343AY.30.000428
ORF1ab/nsp12613H613YCacTac4343B.1.1110.050529
ORF1ab/nsp12613H613YCacTac4242B.1.2051
ORF1ab/nsp12613H613HcaCcaT4141B.1.1.4090.116147
ORF1ab/nsp12613H613HcaCcaT3939B.1.177.70.006429
ORF1ab/nsp12613H613YCacTac3939P.10.000614
ORF1ab/nsp12613H613HcaCcaT3838B.1.1.2220.007752
ORF1ab/nsp12613H613YCacTac3838B.1.36.290.019659
ORF1ab/nsp12613H613HcaCcaT3838B.1.5960.003311
ORF1ab/nsp12613H613HcaCcaT3636AY.250.000217
ORF1ab/nsp12613H613HcaCcaT3636AY.260.001019
ORF1ab/nsp12613H613YCacTac3535B.1.258.140.034314
ORF1ab/nsp12613H613delCAC---3434All0.000007
ORF1ab/nsp12613H613YCacTac3434AY.10.013455
ORF1ab/nsp12613H613HcaCcaT3333B.1.4290.000776
ORF1ab/nsp12613H613NCacAac3232All0.000006
ORF1ab/nsp12613H613HcaCcaT3131B.1.2210.002202
ORF1ab/nsp12613H613YCacTac3030AY.980.00237
ORF1ab/nsp12613H613HcaCcaT3030B.1.2580.001996
ORF1ab/nsp12613H613HcaCcaT3030B.1.3510.000892
ORF1ab/nsp12613H613YCacTac2929AY.1020.000769
ORF1ab/nsp12613H613YCacTac2929AY.1200.001078
ORF1ab/nsp12613H613HcaCcaT2929AY.740.003354
ORF1ab/nsp12613H613YCacTac2929B.60.026388
ORF1ab/nsp12613H613YCacTac2828AY.410.00823
ORF1ab/nsp12613H613RcAccGc2626B.10.000238
ORF1ab/nsp12613H613HcaCcaT2626B.1.1.5190.001032
ORF1ab/nsp12613H613HcaCcaT2424B.1.177.430.035451
ORF1ab/nsp12613H613HcaCcaT2323AY.1020.00061
ORF1ab/nsp12613H613HcaCcaT2222AY.1030.000137
ORF1ab/nsp12613H613YCacTac2222AY.4.20.000477
ORF1ab/nsp12613H613HcaCcaT2222B.1.1.5070.191304
ORF1ab/nsp12613H613HcaCcaT2222B.1.4270.001111
ORF1ab/nsp12613H613HcaCcaT2121B.1.177.860.003853
ORF1ab/nsp12613H613HcaCcaT2121P.1.10.006671
ORF1ab/nsp12613H613HcaCcaT2020AY.390.000494
ORF1ab/nsp12613H613YCacTac2020AY.98.10.000969
ORF1ab/nsp12613H613QcaCcaA1919AY.40.00003
ORF1ab/nsp12613H613YCacTac1919B.1.4290.000447
ORF1ab/nsp12613H613YCacTac1818AY.330.001202
ORF1ab/nsp12613H613HcaCcaT1818AY.860.014938
ORF1ab/nsp12613H613HcaCcaT1818B.1.1.1610.063604
ORF1ab/nsp12613H613HcaCcaT1818P.1.160.006734
ORF1ab/nsp12613H613HcaCcaT1717AY.470.000529
ORF1ab/nsp12613H613YCacTac1717B.1.1.3170.006999
ORF1ab/nsp12613H613HcaCcaT1616AY.46.60.001155
ORF1ab/nsp12613H613YCacTac1616B.1.1.2140.000887
ORF1ab/nsp12613H613YCacTac1616B.1.3510.000476
ORF1ab/nsp12613H613HcaCcaT1616P.20.002986
ORF1ab/nsp12613H613HcaCcaT1515AY.200.000583
ORF1ab/nsp12613H613YCacTac1515AY.260.000425
ORF1ab/nsp12613H613RcAccGc1515AY.40.000023
ORF1ab/nsp12613H613YCacTac1515AY.420.000603
ORF1ab/nsp12613H613YCacTac1515AY.9.20.000551
ORF1ab/nsp12613H613NCacAac1515AZ.20.012315
ORF1ab/nsp12613H613HcaCcaT1515B.1.1.2200.027881
ORF1ab/nsp12613H613YCacTac1515B.1.2430.001044
ORF1ab/nsp12613H613YCacTac1515B.1.258.170.00156
ORF1ab/nsp12613H613YCacTac1515B.1.5260.000353
ORF1ab/nsp12613H613YCacTac1515B.1.6370.001096
ORF1ab/nsp12613H613YCacTac1414AY.3.10.001194
ORF1ab/nsp12613H613YCacTac1414AY.350.003263
ORF1ab/nsp12613H613delCAC---1414B.1.1.70.000013
ORF1ab/nsp12613H613HcaCcaT1414B.1.1600.000437
ORF1ab/nsp12613H613HcaCcaT1414C.370.001625
ORF1ab/nsp12613H613YCacTac1313B.1.1.390.006626
ORF1ab/nsp12613H613YCacTac1313B.1.177.210.000994
ORF1ab/nsp12613H613HcaCcaT1313B.1.258.170.001352
ORF1ab/nsp12613H613YCacTac1212B.1.2150.115385
ORF1ab/nsp12613H613HcaCcaT1212B.1.6090.005753
ORF1ab/nsp12613H613HcaCcaT11110.611111
ORF1ab/nsp12613H613del1caCca-611All0.000001
ORF1ab/nsp12613H613del1cAcc-c311All0.000001
ORF1ab/nsp12613H613del1Cac-ac111All0
ORF1ab/nsp12613H613del1cACc-T111All0
ORF1ab/nsp12613H613YCacTac1111AY.1190.000388
ORF1ab/nsp12613H613HcaCcaT1111B.1.3770.050228
ORF1ab/nsp12613H613HcaCcaT1111B.1.5950.002871
ORF1ab/nsp12613H613YCacTac1010AY.1130.001424
ORF1ab/nsp12613H613HcaCcaT1010AY.1140.002311
ORF1ab/nsp12613H613YCacTac1010AY.200.000389
ORF1ab/nsp12613H613YCacTac1010B.1.1600.000312
ORF1ab/nsp12613H613YCacTac1010B.1.2340.001319
ORF1ab/nsp12613H613YCacTac99AY.160.003417
ORF1ab/nsp12613H613YCacTac99AY.750.000504
ORF1ab/nsp12613H613YCacTac99AY.990.009444
ORF1ab/nsp12613H613YCacTac99B.1.1.10.00294
ORF1ab/nsp12613H613YCacTac99B.1.360.001313
ORF1ab/nsp12613H613YCacTac99B.1.5090.007792
ORF1ab/nsp12613H613HcaCcaT99B.1.617.10.001161
ORF1ab/nsp12613H613YCacTac99B.6.60.008
ORF1ab/nsp12613H613HcaCcaT99C.36.30.005105
ORF1ab/nsp12613H613HcaCcaT99P.1.150.002091
ORF1ab/nsp12613H613DCacGac88All0.000002
ORF1ab/nsp12613H613LcACcTT48All0.000001
ORF1ab/nsp12613H613LcAccTc48All0.000001
ORF1ab/nsp12613H613HcaCcaT88AY.39.10.000317
ORF1ab/nsp12613H613YCacTac88AY.590.004237
ORF1ab/nsp12613H613HcaCcaT88B.1.1.4320.010127
ORF1ab/nsp12613H613YCacTac88B.1.1.5190.000318
ORF1ab/nsp12613H613HcaCcaT88B.1.1.5280.038462
ORF1ab/nsp12613H613HcaCcaT88B.1.3110.002197
ORF1ab/nsp12613H613HcaCcaT88P.1.120.003872
ORF1ab/nsp12613H613YCacTac88P.1.140.000382
ORF1ab/nsp12613H613HcaCcaT88R.10.00072
ORF1ab/nsp12613H613HcaCcaT77AY.1000.000322
ORF1ab/nsp12613H613HcaCcaT77AY.1090.005178
ORF1ab/nsp12613H613HcaCcaT77AY.300.00277
ORF1ab/nsp12613H613HcaCcaT77AY.420.000282
ORF1ab/nsp12613H613HcaCcaT77AY.750.000392
ORF1ab/nsp12613H613HcaCcaT77B.1.1.3120.013384
ORF1ab/nsp12613H613HcaCcaT77B.1.1.580.037634
ORF1ab/nsp12613H613HcaCcaT77B.1.177.810.001325
ORF1ab/nsp12613H613YCacTac77B.1.3970.033981
ORF1ab/nsp12613H613HcaCcaT77B.1.4110.025926
ORF1ab/nsp12613H613YCacTac77B.1.466.20.002739
ORF1ab/nsp12613H613HcaCcaT77B.1.6230.003755
ORF1ab/nsp12613H613YCacTac77B.1.910.014523
ORF1ab/nsp12613H613HcaCcaT77P.1.170.001132
ORF1ab/nsp12613H613HcaCcaT66A.2.50.002994
ORF1ab/nsp12613H613ACAcGCc66All0.000001
ORF1ab/nsp12613H613YCacTac66AY.230.000418
ORF1ab/nsp12613H613YCacTac66AY.520.004886
ORF1ab/nsp12613H613YCacTac66AY.540.000572
ORF1ab/nsp12613H613YCacTac66B.1.1.630.002315
ORF1ab/nsp12613H613HcaCcaT66B.1.1390.004399
ORF1ab/nsp12613H613HcaCcaT66B.1.2400.001293
ORF1ab/nsp12613H613HcaCcaT66B.1.2410.00487
ORF1ab/nsp12613H613YCacTac66B.1.3690.001711
ORF1ab/nsp12613H613YCacTac66B.1.617.10.000774
ORF1ab/nsp12613H613ACAcGCc66B.1.617.20.000023
ORF1ab/nsp12613H613HcaCcaT55A.300.714286
ORF1ab/nsp12613H613YCacTac55AY.1170.000423
ORF1ab/nsp12613H613YCacTac55AY.270.000324
ORF1ab/nsp12613H613RcAccGc55AY.340.000485
ORF1ab/nsp12613H613YCacTac55AY.39.10.000198
ORF1ab/nsp12613H613YCacTac55AY.470.000156
ORF1ab/nsp12613H613HcaCcaT55AY.920.001436
ORF1ab/nsp12613H613HcaCcaT55AY.980.000395
ORF1ab/nsp12613H613YCacTac55B0.000639
ORF1ab/nsp12613H613HcaCcaT55B.1.1.280.001556
ORF1ab/nsp12613H613HcaCcaT55B.1.1.390.002548
ORF1ab/nsp12613H613QcaCcaG45B.1.1.70.000004
ORF1ab/nsp12613H613QcaCcaA15B.1.1.70.000001
ORF1ab/nsp12613H613YCacTac55B.1.1280.003177
ORF1ab/nsp12613H613YCacTac55B.1.177.40.001055
ORF1ab/nsp12613H613YCacTac55B.1.177.600.001092
ORF1ab/nsp12613H613HcaCcaT55B.1.2060.004078
ORF1ab/nsp12613H613HcaCcaT55B.1.214.20.002998
ORF1ab/nsp12613H613YCacTac55B.1.4130.021277
ORF1ab/nsp12613H613YCacTac55B.1.4220.004062
ORF1ab/nsp12613H613YCacTac55B.1.4650.019011
ORF1ab/nsp12613H613HcaCcaT55B.1.5250.000566
ORF1ab/nsp12613H613QcaCcaA55B.1.617.20.000019
ORF1ab/nsp12613H613HcaCcaT55C.180.012953
ORF1ab/nsp12613H613YCacTac55P.1.170.000809
ORF1ab/nsp12613H613HcaCcaT44A0.001548
ORF1ab/nsp12613H613YCacTac44A.2.50.001996
ORF1ab/nsp12613H613HcaCcaT44AY.1210.000541
ORF1ab/nsp12613H613HcaCcaT44AY.330.000267
ORF1ab/nsp12613H613YCacTac44AY.360.000593
ORF1ab/nsp12613H613DCacGac44AY.40.000006
ORF1ab/nsp12613H613YCacTac44AY.4.50.00043
ORF1ab/nsp12613H613HcaCcaT44AY.520.003257
ORF1ab/nsp12613H613HcaCcaT44AY.610.000419
ORF1ab/nsp12613H613YCacTac44AY.99.10.006211
ORF1ab/nsp12613H613HcaCcaT44B.1.1.100.004459
ORF1ab/nsp12613H613YCacTac44B.1.1.2220.000816
ORF1ab/nsp12613H613HcaCcaT44B.1.1.2940.005063
ORF1ab/nsp12613H613HcaCcaT44B.1.1.5230.00625
ORF1ab/nsp12613H613LcACcTT44B.1.1.70.000004
ORF1ab/nsp12613H613HcaCcaT44B.1.1.700.001364
ORF1ab/nsp12613H613HcaCcaT44B.1.1570.01194
ORF1ab/nsp12613H613HcaCcaT44B.1.177.170.003284
ORF1ab/nsp12613H613HcaCcaT44B.1.177.310.045977
ORF1ab/nsp12613H613HcaCcaT44B.1.177.320.005398
ORF1ab/nsp12613H613YCacTac44B.1.177.810.000757
ORF1ab/nsp12613H613HcaCcaT44B.1.2140.014652
ORF1ab/nsp12613H613YCacTac44B.1.2580.000266
ORF1ab/nsp12613H613HcaCcaT44B.1.36.80.004
ORF1ab/nsp12613H613YCacTac44B.1.4270.000202
ORF1ab/nsp12613H613YCacTac44B.1.5250.000453
ORF1ab/nsp12613H613HcaCcaT44B.1.5640.001704
ORF1ab/nsp12613H613HcaCcaT44B.1.5750.001214
ORF1ab/nsp12613H613YCacTac44B.1.5960.000349
ORF1ab/nsp12613H613HcaCcaT44C.160.004242
ORF1ab/nsp12613H613HcaCcaT44P.1.100.001078
ORF1ab/nsp12613H613YCacTac44P.1.120.001936
ORF1ab/nsp12613H613YCacTac33A.10.000846
ORF1ab/nsp12613H613HcaCcaT33AH.30.011407
ORF1ab/nsp12613H613YCacTac33AY.1070.001398
ORF1ab/nsp12613H613YCacTac33AY.1110.000549
ORF1ab/nsp12613H613YCacTac33AY.1160.00086
ORF1ab/nsp12613H613HcaCcaT33AY.1190.000106
ORF1ab/nsp12613H613YCacTac33AY.140.000264
ORF1ab/nsp12613H613YCacTac33AY.20.001068
ORF1ab/nsp12613H613HcaCcaT33AY.270.000194
ORF1ab/nsp12613H613YCacTac33AY.29.10.000662
ORF1ab/nsp12613H613HcaCcaT33AY.360.000445
ORF1ab/nsp12613H613RcAccGc33AY.390.000074
ORF1ab/nsp12613H613QcaCcaA33AY.440.000018
ORF1ab/nsp12613H613YCacTac33AY.450.000365
ORF1ab/nsp12613H613HcaCcaT33AY.450.000365
ORF1ab/nsp12613H613YCacTac33AY.46.40.000494
ORF1ab/nsp12613H613HcaCcaT33AY.50.000062
ORF1ab/nsp12613H613YCacTac33AY.5.30.001012
ORF1ab/nsp12613H613HcaCcaT33AY.680.000821
ORF1ab/nsp12613H613YCacTac33AY.75.10.000541
ORF1ab/nsp12613H613HcaCcaT33AY.9.10.000251
ORF1ab/nsp12613H613YCacTac33AY.910.002191
ORF1ab/nsp12613H613HcaCcaT33B.1.1.2050.011152
ORF1ab/nsp12613H613YCacTac33B.1.1.2160.002671
ORF1ab/nsp12613H613HcaCcaT33B.1.1.3560.025641
ORF1ab/nsp12613H613HcaCcaT33B.1.1.3720.002066
ORF1ab/nsp12613H613YCacTac33B.1.1.4340.001046
ORF1ab/nsp12613H613YCacTac33B.1.1.5280.014423
ORF1ab/nsp12613H613HcaCcaT33B.1.177.120.000455
ORF1ab/nsp12613H613YCacTac33B.1.177.320.004049
ORF1ab/nsp12613H613HcaCcaT33B.1.177.410.0075
ORF1ab/nsp12613H613YCacTac33B.1.177.540.001819
ORF1ab/nsp12613H613HcaCcaT33B.1.2370.014925
ORF1ab/nsp12613H613HcaCcaT33B.1.2430.000209
ORF1ab/nsp12613H613HcaCcaT33B.1.3490.002144
ORF1ab/nsp12613H613HcaCcaT33B.1.3670.002377
ORF1ab/nsp12613H613HcaCcaT33B.1.3960.002117
ORF1ab/nsp12613H613HcaCcaT33B.1.4620.021739
ORF1ab/nsp12613H613YCacTac33B.1.4700.004213
ORF1ab/nsp12613H613YCacTac33B.1.5070.033708
ORF1ab/nsp12613H613YCacTac33B.1.5610.001191
ORF1ab/nsp12613H613HcaCcaT33B.1.5800.012195
ORF1ab/nsp12613H613HcaCcaT33B.1.5900.013636
ORF1ab/nsp12613H613HcaCcaT33B.1.6210.000266
ORF1ab/nsp12613H613YCacTac33C.370.000348
ORF1ab/nsp12613H613YCacTac33P.1.150.000697
ORF1ab/nsp12613H613HcaCcaT33P.1.70.000958
ORF1ab/nsp12613H613YCaCTaT33Q.80.000495
ORF1ab/nsp12613H613YCacTac33R.10.00027
ORF1ab/nsp12613H613YCacTac22A.2.5.30.020619
ORF1ab/nsp12613H613HcaCcaT22AD.20.000438
ORF1ab/nsp12613H613YCacTac22AY.1010.000981
ORF1ab/nsp12613H613YCacTac22AY.1060.00067
ORF1ab/nsp12613H613HcaCcaT22AY.1080.002205
ORF1ab/nsp12613H613HcaCcaT22AY.1130.000285
ORF1ab/nsp12613H613HcaCcaT22AY.1180.000125
ORF1ab/nsp12613H613YCacTac22AY.120.000632
ORF1ab/nsp12613H613HcaCcaT22AY.140.000176
ORF1ab/nsp12613H613HcaCcaT22AY.160.000759
ORF1ab/nsp12613H613HcaCcaT22AY.23.10.000835
ORF1ab/nsp12613H613YCacTac22AY.300.000791
ORF1ab/nsp12613H613YCacTac22AY.340.000194
ORF1ab/nsp12613H613HcaCcaT22AY.350.000466
ORF1ab/nsp12613H613NCacAac22AY.40.000003
ORF1ab/nsp12613H613HcaCcaT22AY.4.20.000043
ORF1ab/nsp12613H613QcaCcaA22AY.4.2.10.000298
ORF1ab/nsp12613H613YCacTac22AY.400.001929
ORF1ab/nsp12613H613RcAccGc22AY.440.000012
ORF1ab/nsp12613H613YCacTac22AY.460.000208
ORF1ab/nsp12613H613HcaCcaT22AY.46.40.000329
ORF1ab/nsp12613H613YCacTac22AY.46.60.000144
ORF1ab/nsp12613H613YCacTac22AY.480.00093
ORF1ab/nsp12613H613RcAccGc22AY.50.000041
ORF1ab/nsp12613H613YCacTac22AY.5.40.000553
ORF1ab/nsp12613H613HcaCcaT22AY.530.000575
ORF1ab/nsp12613H613QcaCcaA22AY.550.001835
ORF1ab/nsp12613H613HcaCcaT22AY.590.001059
ORF1ab/nsp12613H613YCacTac22AY.610.00021
ORF1ab/nsp12613H613HcaCcaT22AY.660.002139
ORF1ab/nsp12613H613HcaCcaT22AY.670.000929
ORF1ab/nsp12613H613YCacTac22AY.690.000373
ORF1ab/nsp12613H613YCacTac22AY.730.001331
ORF1ab/nsp12613H613YCacTac22AY.740.000231
ORF1ab/nsp12613H613HcaCcaT22AY.75.10.000361
ORF1ab/nsp12613H613YCacTac22AY.790.002421
ORF1ab/nsp12613H613HcaCcaT22AY.840.000875
ORF1ab/nsp12613H613YCacTac22AY.850.000854
ORF1ab/nsp12613H613HcaCcaT22AY.850.000854
ORF1ab/nsp12613H613HcaCcaT22AY.880.001768
ORF1ab/nsp12613H613HcaCcaT22AY.9.20.000073
ORF1ab/nsp12613H613YCacTac22AY.930.000546
ORF1ab/nsp12613H613HcaCcaT22AY.930.000546
ORF1ab/nsp12613H613HcaCcaT22AZ.20.001642
ORF1ab/nsp12613H613NCacAac22B.10.000018
ORF1ab/nsp12613H613del1caCca-12B.10.000009
ORF1ab/nsp12613H613del1cACc-T12B.10.000009
ORF1ab/nsp12613H613del1cAcc-c12B.1.10.000018
ORF1ab/nsp12613H613del1caCca-12B.1.10.000018
ORF1ab/nsp12613H613HcaCcaT22B.1.1.1710.007353
ORF1ab/nsp12613H613HcaCcaT22B.1.1.2090.017857
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3060.000877
ORF1ab/nsp12613H613YCacTac22B.1.1.3070.005063
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3170.000823
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3180.000604
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3260.003521
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3700.025316
ORF1ab/nsp12613H613HcaCcaT22B.1.1.3740.004751
ORF1ab/nsp12613H613HcaCcaT22B.1.1.4170.005405
ORF1ab/nsp12613H613YCacTac22B.1.1.500.001358
ORF1ab/nsp12613H613HcaCcaT22B.1.1.5240.041667
ORF1ab/nsp12613H613HcaCcaT22B.1.1.5250.010929
ORF1ab/nsp12613H613del1caCca-12B.1.1.70.000001
ORF1ab/nsp12613H613del1Cac-ac12B.1.1.70.000001
ORF1ab/nsp12613H613YCacTac22B.1.1570.00597
ORF1ab/nsp12613H613HcaCcaT22B.1.160.160.001859
ORF1ab/nsp12613H613delCAC---22B.1.1770.000026
ORF1ab/nsp12613H613HcaCcaT22B.1.177.330.003289
ORF1ab/nsp12613H613HcaCcaT22B.1.177.500.00939
ORF1ab/nsp12613H613YCacTac22B.1.177.560.001335
ORF1ab/nsp12613H613HcaCcaT22B.1.177.630.005405
ORF1ab/nsp12613H613YCacTac22B.1.177.750.002081
ORF1ab/nsp12613H613YCacTac22B.1.177.830.002963
ORF1ab/nsp12613H613YCacTac22B.1.2140.007326
ORF1ab/nsp12613H613HcaCcaT22B.1.214.30.014286
ORF1ab/nsp12613H613YCacTac22B.1.2400.000431
ORF1ab/nsp12613H613HcaCcaT22B.1.258.140.001961
ORF1ab/nsp12613H613NCacAac22B.1.258.170.000208
ORF1ab/nsp12613H613QcaCcaA22B.1.3510.000059
ORF1ab/nsp12613H613YCacTac22B.1.351.20.000605
ORF1ab/nsp12613H613HcaCcaT22B.1.351.50.001199
ORF1ab/nsp12613H613YCacTac22B.1.36.190.018519
ORF1ab/nsp12613H613YCacTac22B.1.36.80.002
ORF1ab/nsp12613H613HcaCcaT22B.1.3620.003082
ORF1ab/nsp12613H613YCacTac22B.1.3700.016
ORF1ab/nsp12613H613YCacTac22B.1.3750.001639
ORF1ab/nsp12613H613YCacTac22B.1.4000.000858
ORF1ab/nsp12613H613YCacTac22B.1.4280.002041
ORF1ab/nsp12613H613HcaCcaT22B.1.5170.000854
ORF1ab/nsp12613H613YCacTac22B.1.5230.004902
ORF1ab/nsp12613H613HcaCcaT22B.1.5240.002813
ORF1ab/nsp12613H613HcaCcaT22B.1.5300.014286
ORF1ab/nsp12613H613HcaCcaT22B.1.5330.019231
ORF1ab/nsp12613H613HcaCcaT22B.1.5610.000794
ORF1ab/nsp12613H613HcaCcaT22B.1.5990.007299
ORF1ab/nsp12613H613delCAC---22B.1.617.20.000008
ORF1ab/nsp12613H613del1caCca-22B.1.617.20.000008
ORF1ab/nsp12613H613DCacGac22B.1.617.20.000008
ORF1ab/nsp12613H613HcaCcaT22B.1.617.30.00597
ORF1ab/nsp12613H613HcaCcaT22B.1.6200.001892
ORF1ab/nsp12613H613YCacTac22B.1.6210.000177
ORF1ab/nsp12613H613HcaCcaT22B.1.621.10.001012
ORF1ab/nsp12613H613HcaCcaT22B.1.6250.004706
ORF1ab/nsp12613H613HcaCcaT22B.1.6280.000705
ORF1ab/nsp12613H613YCacTac22B.1.6280.000705
ORF1ab/nsp12613H613HcaCcaT22B.1.6330.083333
ORF1ab/nsp12613H613HcaCcaT22P.1.130.001797
ORF1ab/nsp12613H613YCacTac22P.1.70.000639
ORF1ab/nsp12613H613YCaCTaT22Q.70.002222
ORF1ab/nsp12613H613RcACcGT22Q.80.00033
ORF1ab/nsp12613H613YCacTac11A0.000387
ORF1ab/nsp12613H613HcaCcaT11A.2.40.003367
ORF1ab/nsp12613H613YCacTac11A.2.5.10.004808
ORF1ab/nsp12613H613HcaCcaT11A.270.001656
ORF1ab/nsp12613H613HcaCcaT11A.30.002096
ORF1ab/nsp12613H613HcaCcaT11A.70.055556
ORF1ab/nsp12613H613delCAC---11AD.20.000219
ORF1ab/nsp12613H613YCacTac11AE.80.000489
ORF1ab/nsp12613H613del2cACc--11All0
ORF1ab/nsp12613H613PcAccCc11All0
ORF1ab/nsp12613H613HcaCcaT11AY.1010.00049
ORF1ab/nsp12613H613QcaCcaA11AY.1020.000027
ORF1ab/nsp12613H613RcAccGc11AY.1030.000006
ORF1ab/nsp12613H613NCacAac11AY.1030.000006
ORF1ab/nsp12613H613YCacTac11AY.1050.000643
ORF1ab/nsp12613H613YCacTac11AY.1100.000113
ORF1ab/nsp12613H613HcaCcaT11AY.1100.000113
ORF1ab/nsp12613H613NCacAac11AY.1110.000183
ORF1ab/nsp12613H613YCacTac11AY.1140.000231
ORF1ab/nsp12613H613HcaCcaT11AY.1160.000287
ORF1ab/nsp12613H613YCacTac11AY.116.10.000311
ORF1ab/nsp12613H613HcaCcaT11AY.1170.000085
ORF1ab/nsp12613H613YCacTac11AY.1180.000063
ORF1ab/nsp12613H613HcaCcaT11AY.1200.000037
ORF1ab/nsp12613H613YCacTac11AY.120.10.000321
ORF1ab/nsp12613H613YCacTac11AY.1210.000135
ORF1ab/nsp12613H613YCacTac11AY.130.000161
ORF1ab/nsp12613H613HcaCcaT11AY.130.000161
ORF1ab/nsp12613H613YCacTac11AY.190.00114
ORF1ab/nsp12613H613HcaCcaT11AY.20.000356
ORF1ab/nsp12613H613NCacAac11AY.200.000039
ORF1ab/nsp12613H613NCacAac11AY.230.00007
ORF1ab/nsp12613H613HcaCcaT11AY.230.00007
ORF1ab/nsp12613H613YCacTac11AY.23.10.000417
ORF1ab/nsp12613H613DCacGac11AY.250.000006
ORF1ab/nsp12613H613delCAC---11AY.250.000006
ORF1ab/nsp12613H613QcaCcaA11AY.250.000006
ORF1ab/nsp12613H613QcaCcaA11AY.260.000028
ORF1ab/nsp12613H613RcAccGc11AY.290.000016
ORF1ab/nsp12613H613HcaCcaT11AY.29.10.000221
ORF1ab/nsp12613H613QcaCcaA11AY.30.00001
ORF1ab/nsp12613H613DCacGac11AY.3.10.000085
ORF1ab/nsp12613H613delCAC---11AY.340.000097
ORF1ab/nsp12613H613YCacTac11AY.34.10.00051
ORF1ab/nsp12613H613QcaCcaA11AY.360.000148
ORF1ab/nsp12613H613YCacTac11AY.39.20.001541
ORF1ab/nsp12613H613HcaCcaT11AY.39.20.001541
ORF1ab/nsp12613H613HcaCcaT11AY.4.2.10.000149
ORF1ab/nsp12613H613YCacTac11AY.4.2.10.000149
ORF1ab/nsp12613H613HcaCcaT11AY.4.30.000842
ORF1ab/nsp12613H613YCacTac11AY.4.40.000409
ORF1ab/nsp12613H613delCAC---11AY.4.50.000107
ORF1ab/nsp12613H613HcaCcaT11AY.4.50.000107
ORF1ab/nsp12613H613delCAC---11AY.430.000004
ORF1ab/nsp12613H613RcAccGc11AY.430.000004
ORF1ab/nsp12613H613NCacAac11AY.430.000004
ORF1ab/nsp12613H613LcAccTc11AY.430.000004
ORF1ab/nsp12613H613NCacAac11AY.440.000006
ORF1ab/nsp12613H613HcaCcaT11AY.460.000104
ORF1ab/nsp12613H613del1cAcc-c11AY.460.000104
ORF1ab/nsp12613H613HcaCcaT11AY.46.10.001027
ORF1ab/nsp12613H613YCacTac11AY.46.10.001027
ORF1ab/nsp12613H613YCacTac11AY.46.20.000635
ORF1ab/nsp12613H613YCacTac11AY.46.50.000198
ORF1ab/nsp12613H613HcaCcaT11AY.5.40.000277
ORF1ab/nsp12613H613HcaCcaT11AY.500.000799
ORF1ab/nsp12613H613QcaCcaA11AY.540.000095
ORF1ab/nsp12613H613YCacTac11AY.560.001605
ORF1ab/nsp12613H613YCacTac11AY.570.000656
ORF1ab/nsp12613H613YCacTac11AY.580.000907
ORF1ab/nsp12613H613QcaCcaA11AY.590.00053
ORF1ab/nsp12613H613HcaCcaT11AY.60.000041
ORF1ab/nsp12613H613HcaCcaT11AY.630.000387
ORF1ab/nsp12613H613YCacTac11AY.670.000464
ORF1ab/nsp12613H613YCacTac11AY.680.000274
ORF1ab/nsp12613H613HcaCcaT11AY.690.000187
ORF1ab/nsp12613H613YCacTac11AY.70.000196
ORF1ab/nsp12613H613YCacTac11AY.7.10.000113
ORF1ab/nsp12613H613HcaCcaT11AY.7.10.000113
ORF1ab/nsp12613H613QcaCcaA11AY.710.000475
ORF1ab/nsp12613H613QcaCcaA11AY.750.000056
ORF1ab/nsp12613H613delCAC---11AY.75.10.00018
ORF1ab/nsp12613H613HcaCcaT11AY.780.001541
ORF1ab/nsp12613H613YCacTac11AY.780.001541
ORF1ab/nsp12613H613YCacTac11AY.80.000606
ORF1ab/nsp12613H613YCacTac11AY.820.001357
ORF1ab/nsp12613H613HcaCcaT11AY.820.001357
ORF1ab/nsp12613H613YCacTac11AY.840.000437
ORF1ab/nsp12613H613YCacTac11AY.870.000833
ORF1ab/nsp12613H613YCacTac11AY.90.000068
ORF1ab/nsp12613H613HcaCcaT11AY.90.000068
ORF1ab/nsp12613H613YCacTac11AY.9.10.000084
ORF1ab/nsp12613H613RcAccGc11AY.9.20.000037
ORF1ab/nsp12613H613YCacTac11AY.900.000684
ORF1ab/nsp12613H613HcaCcaT11AY.98.10.000048
ORF1ab/nsp12613H613YCacTac11AY.99.20.000092
ORF1ab/nsp12613H613QcaCcaA11B0.000128
ORF1ab/nsp12613H613QcaCcaA11B.10.000009
ORF1ab/nsp12613H613NCacAac11B.1.10.000018
ORF1ab/nsp12613H613RcAccGc11B.1.10.000018
ORF1ab/nsp12613H613QcaCcaA11B.1.10.000018
ORF1ab/nsp12613H613HcaCcaT11B.1.1.10.000327
ORF1ab/nsp12613H613YCacTac11B.1.1.1620.029412
ORF1ab/nsp12613H613HcaCcaT11B.1.1.1700.001247
ORF1ab/nsp12613H613YCacTac11B.1.1.1760.000439
ORF1ab/nsp12613H613HcaCcaT11B.1.1.1890.001513
ORF1ab/nsp12613H613HcaCcaT11B.1.1.1980.001468
ORF1ab/nsp12613H613YCacTac11B.1.1.2200.001859
ORF1ab/nsp12613H613RcAccGc11B.1.1.2220.000204
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2310.003096
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2360.006897
ORF1ab/nsp12613H613HcaCcaT11B.1.1.250.000569
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2540.011236
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2650.003155
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2690.001353
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2770.000759
ORF1ab/nsp12613H613HcaCcaT11B.1.1.2910.000742
ORF1ab/nsp12613H613HcaCcaT11B.1.1.3010.001179
ORF1ab/nsp12613H613YCacTac11B.1.1.3010.001179
ORF1ab/nsp12613H613YCacTac11B.1.1.3020.002075
ORF1ab/nsp12613H613LcAccTc11B.1.1.3110.000358
ORF1ab/nsp12613H613YCacTac11B.1.1.3180.000302
ORF1ab/nsp12613H613HcaCcaT11B.1.1.3280.016949
ORF1ab/nsp12613H613YCacTac11B.1.1.3280.016949
ORF1ab/nsp12613H613YCacTac11B.1.1.330.000421
ORF1ab/nsp12613H613HcaCcaT11B.1.1.330.000421
ORF1ab/nsp12613H613YCacTac11B.1.1.3480.000796
ORF1ab/nsp12613H613HcaCcaT11B.1.1.3480.000796
ORF1ab/nsp12613H613YCacTac11B.1.1.3640.066667
ORF1ab/nsp12613H613YCacTac11B.1.1.3720.000689
ORF1ab/nsp12613H613YCacTac11B.1.1.3780.007299
ORF1ab/nsp12613H613YCacTac11B.1.1.3890.006061
ORF1ab/nsp12613H613YCacTac11B.1.1.3970.002252
ORF1ab/nsp12613H613HcaCcaT11B.1.1.3970.002252
ORF1ab/nsp12613H613YCacTac11B.1.1.40.002976
ORF1ab/nsp12613H613YCacTac11B.1.1.4170.002703
ORF1ab/nsp12613H613YCacTac11B.1.1.4240.045455
ORF1ab/nsp12613H613HcaCcaT11B.1.1.4370.010417
ORF1ab/nsp12613H613HcaCcaT11B.1.1.4620.008621
ORF1ab/nsp12613H613HcaCcaT11B.1.1.4640.001473
ORF1ab/nsp12613H613YCacTac11B.1.1.5230.001563
ORF1ab/nsp12613H613HcaCcaT11B.1.1.5260.003546
ORF1ab/nsp12613H613delCAC---11B.1.1.700.000341
ORF1ab/nsp12613H613HcaCcaT11B.1.1.990.02381
ORF1ab/nsp12613H613YCacTac11B.1.110.30.000718
ORF1ab/nsp12613H613YCacTac11B.1.130.002375
ORF1ab/nsp12613H613delCAC---11B.1.1400.018868
ORF1ab/nsp12613H613YCacTac11B.1.1470.000756
ORF1ab/nsp12613H613NCacAac11B.1.1600.000031
ORF1ab/nsp12613H613delCAC---11B.1.160.230.004831
ORF1ab/nsp12613H613HcaCcaT11B.1.160.310.008065
ORF1ab/nsp12613H613YCacTac11B.1.160.330.004425
ORF1ab/nsp12613H613HcaCcaT11B.1.160.70.002079
ORF1ab/nsp12613H613HcaCcaT11B.1.1700.00431
ORF1ab/nsp12613H613QcaCcaA11B.1.1770.000013
ORF1ab/nsp12613H613HcaCcaT11B.1.177.150.000631
ORF1ab/nsp12613H613HcaCcaT11B.1.177.160.000664
ORF1ab/nsp12613H613delCAC---11B.1.177.160.000664
ORF1ab/nsp12613H613YCacTac11B.1.177.200.001517
ORF1ab/nsp12613H613HcaCcaT11B.1.177.210.000076
ORF1ab/nsp12613H613YCacTac11B.1.177.350.000691
ORF1ab/nsp12613H613HcaCcaT11B.1.177.40.000211
ORF1ab/nsp12613H613YCacTac11B.1.177.420.000894
ORF1ab/nsp12613H613YCacTac11B.1.177.440.000519
ORF1ab/nsp12613H613HcaCcaT11B.1.177.440.000519
ORF1ab/nsp12613H613delCAC---11B.1.177.50.001242
ORF1ab/nsp12613H613HcaCcaT11B.1.177.510.004566
ORF1ab/nsp12613H613delCAC---11B.1.177.540.000606
ORF1ab/nsp12613H613HcaCcaT11B.1.177.560.000668
ORF1ab/nsp12613H613YCacTac11B.1.177.580.001332
ORF1ab/nsp12613H613HcaCcaT11B.1.177.60.000977
ORF1ab/nsp12613H613HcaCcaT11B.1.177.600.000218
ORF1ab/nsp12613H613NCacAac11B.1.177.670.007634
ORF1ab/nsp12613H613YCacTac11B.1.177.860.000183
ORF1ab/nsp12613H613RcAccGc11B.1.177.860.000183
ORF1ab/nsp12613H613delCAC---11B.1.177.90.001332
ORF1ab/nsp12613H613RcAccGc11B.1.20.000009
ORF1ab/nsp12613H613del1cAcc-c11B.1.20.000009
ORF1ab/nsp12613H613YCacTac11B.1.2100.002132
ORF1ab/nsp12613H613YCacTac11B.1.220.001318
ORF1ab/nsp12613H613YCacTac11B.1.2210.000071
ORF1ab/nsp12613H613HcaCcaT11B.1.2340.000132
ORF1ab/nsp12613H613HcaCcaT11B.1.2390.001221
ORF1ab/nsp12613H613YCacTac11B.1.2470.014925
ORF1ab/nsp12613H613HcaCcaT11B.1.258.110.000396
ORF1ab/nsp12613H613HcaCcaT11B.1.2600.003344
ORF1ab/nsp12613H613YCacTac11B.1.2790.000514
ORF1ab/nsp12613H613YCacTac11B.1.2810.021739
ORF1ab/nsp12613H613HcaCcaT11B.1.3010.005917
ORF1ab/nsp12613H613YCacTac11B.1.3110.000275
ORF1ab/nsp12613H613HcaCcaT11B.1.3200.001245
ORF1ab/nsp12613H613HcaCcaT11B.1.3240.001605
ORF1ab/nsp12613H613HcaCcaT11B.1.3360.002439
ORF1ab/nsp12613H613YCacTac11B.1.3480.018182
ORF1ab/nsp12613H613HcaCcaT11B.1.351.30.000876
ORF1ab/nsp12613H613HcaCcaT11B.1.36.10.00114
ORF1ab/nsp12613H613HcaCcaT11B.1.36.100.004785
ORF1ab/nsp12613H613HcaCcaT11B.1.36.170.000494
ORF1ab/nsp12613H613YCacTac11B.1.36.170.000494
ORF1ab/nsp12613H613YCacTac11B.1.36.200.016949
ORF1ab/nsp12613H613YCacTac11B.1.36.230.016393
ORF1ab/nsp12613H613HcaCcaT11B.1.36.240.006173
ORF1ab/nsp12613H613YCacTac11B.1.36.380.001642
ORF1ab/nsp12613H613HcaCcaT11B.1.3690.000285
ORF1ab/nsp12613H613HcaCcaT11B.1.3800.006623
ORF1ab/nsp12613H613YCacTac11B.1.3800.006623
ORF1ab/nsp12613H613YCacTac11B.1.3810.007812
ORF1ab/nsp12613H613YCacTac11B.1.3910.001127
ORF1ab/nsp12613H613HcaCcaT11B.1.3930.028571
ORF1ab/nsp12613H613HcaCcaT11B.1.3970.004854
ORF1ab/nsp12613H613HcaCcaT11B.1.4000.000429
ORF1ab/nsp12613H613YCacTac11B.1.4080.00369
ORF1ab/nsp12613H613YCacTac11B.1.4090.000781
ORF1ab/nsp12613H613delCAC---11B.1.4150.014286
ORF1ab/nsp12613H613HcaCcaT11B.1.4160.001269
ORF1ab/nsp12613H613HcaCcaT11B.1.4170.028571
ORF1ab/nsp12613H613LcAccTc11B.1.4290.000024
ORF1ab/nsp12613H613HcaCcaT11B.1.4320.011236
ORF1ab/nsp12613H613YCacTac11B.1.438.10.000107
ORF1ab/nsp12613H613HcaCcaT11B.1.438.10.000107
ORF1ab/nsp12613H613HcaCcaT11B.1.4560.003268
ORF1ab/nsp12613H613YCacTac11B.1.466.10.007194
ORF1ab/nsp12613H613HcaCcaT11B.1.466.20.000391
ORF1ab/nsp12613H613HcaCcaT11B.1.4680.005714
ORF1ab/nsp12613H613HcaCcaT11B.1.4700.001404
ORF1ab/nsp12613H613HcaCcaT11B.1.4730.019231
ORF1ab/nsp12613H613delCAC---11B.1.4970.000315
ORF1ab/nsp12613H613HcaCcaT11B.1.5100.026316
ORF1ab/nsp12613H613YCacTac11B.1.5170.000427
ORF1ab/nsp12613H613HcaCcaT11B.1.5380.008065
ORF1ab/nsp12613H613YCacTac11B.1.5380.008065
ORF1ab/nsp12613H613YCacTac11B.1.5640.000426
ORF1ab/nsp12613H613YCacTac11B.1.5650.00081
ORF1ab/nsp12613H613YCacTac11B.1.5750.000303
ORF1ab/nsp12613H613HcaCcaT11B.1.5770.000687
ORF1ab/nsp12613H613HcaCcaT11B.1.5820.000491
ORF1ab/nsp12613H613QcaCcaA11B.1.5960.000087
ORF1ab/nsp12613H613HcaCcaT11B.1.6060.006024
ORF1ab/nsp12613H613QcaCcaA11B.1.617.10.000129
ORF1ab/nsp12613H613del1caCca-11B.1.617.10.000129
ORF1ab/nsp12613H613NCacAac11B.1.617.20.000004
ORF1ab/nsp12613H613RcAccGc11B.1.617.20.000004
ORF1ab/nsp12613H613LcAccTc11B.1.617.20.000004
ORF1ab/nsp12613H613RcAccGc11B.1.6210.000089
ORF1ab/nsp12613H613YCacTac11B.1.6270.00202
ORF1ab/nsp12613H613HcaCcaT11B.1.6270.00202
ORF1ab/nsp12613H613RcAccGc11B.1.6280.000352
ORF1ab/nsp12613H613HcaCcaT11B.1.6340.003425
ORF1ab/nsp12613H613HcaCcaT11B.1.6360.006711
ORF1ab/nsp12613H613YCacTac11B.1.80.001972
ORF1ab/nsp12613H613YCacTac11B.1.840.020833
ORF1ab/nsp12613H613HcaCcaT11B.1.940.027027
ORF1ab/nsp12613H613YCacTac11B.200.023256
ORF1ab/nsp12613H613HcaCcaT11B.350.007812
ORF1ab/nsp12613H613HcaCcaT11B.60.00091
ORF1ab/nsp12613H613HcaCcaT11B.6.60.000889
ORF1ab/nsp12613H613del2cACc--11C.170.055556
ORF1ab/nsp12613H613YCacTac11C.300.001727
ORF1ab/nsp12613H613YCacTac11C.40.01
ORF1ab/nsp12613H613YCacTac11D.20.000075
ORF1ab/nsp12613H613NCacAac11D.20.000075
ORF1ab/nsp12613H613PcAccCc11D.20.000075
ORF1ab/nsp12613H613YCacTac11D.50.004975
ORF1ab/nsp12613H613HcaCcaT11P.1.10.10.00813
ORF1ab/nsp12613H613YCacTac11P.1.130.000898
ORF1ab/nsp12613H613HcaCcaT11P.1.140.000048
ORF1ab/nsp12613H613YCacTac11P.1.20.001156
ORF1ab/nsp12613H613YCacTac11P.30.001595
ORF1ab/nsp12613H613YCaCTaT11Q.10.000126
ORF1ab/nsp12613H613delCAC---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.