CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 613 | H613H | H5005H | syn | caC | caT | 1142683 | 1142683 | 1 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613Y | H5005Y | nonsyn | Cac | Tac | 22506 | 21277 | 0.945392 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613Y | H5005Y | nonsyn | CaC | TaT | 22506 | 1229 | 0.0546077 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613R | H5005R | nonsyn | cAC | cGT | 647 | 583 | 0.901082 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613R | H5005R | nonsyn | cAc | cGc | 647 | 64 | 0.0989181 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613Q | H5005Q | nonsyn | caC | caA | 125 | 121 | 0.968 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613Q | H5005Q | nonsyn | caC | caG | 125 | 4 | 0.032 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613del | H5005del | del | CAC | --- | 34 | 34 | 1 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613N | H5005N | nonsyn | Cac | Aac | 32 | 32 | 1 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613del1 | H5005del1 | del | caC | ca- | 11 | 6 | 0.545455 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613del1 | H5005del1 | del | cAc | c-c | 11 | 3 | 0.272727 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613del1 | H5005del1 | del | cAC | c-T | 11 | 1 | 0.0909091 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613del1 | H5005del1 | del | Cac | -ac | 11 | 1 | 0.0909091 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613D | H5005D | nonsyn | Cac | Gac | 8 | 8 | 1 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613L | H5005L | nonsyn | cAc | cTc | 8 | 4 | 0.5 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613L | H5005L | nonsyn | cAC | cTT | 8 | 4 | 0.5 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613A | H5005A | nonsyn | CAc | GCc | 6 | 6 | 1 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613del2 | H5005del2 | del | cAC | c-- | 1 | 1 | 1 | 15277-15279 |
ORF1ab/nsp12 | 613 | H613P | H5005P | nonsyn | cAc | cCc | 1 | 1 | 1 | 15277-15279 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1142683 | 1142683 | All | 0.218552 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1110752 | 1110752 | B.1.1.7 | 0.994371 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 21277 | 22506 | All | 0.004069 |
ORF1ab/nsp12 | 613 | H613Y | CaC | TaT | 1229 | 22506 | All | 0.000235 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 17706 | 17711 | AY.4 | 0.027558 |
ORF1ab/nsp12 | 613 | H613Y | CaC | TaT | 5 | 17711 | AY.4 | 0.000008 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7888 | 7888 | Q.1 | 0.996463 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 6860 | 6860 | Q.3 | 0.994924 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4598 | 4598 | Q.8 | 0.758245 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2961 | 2961 | B.1.1 | 0.053715 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2184 | 2184 | Q.4 | 0.993179 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1629 | 1629 | Q.2 | 0.999387 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1454 | 1454 | B.1 | 0.013318 |
ORF1ab/nsp12 | 613 | H613Y | CaC | TaT | 1216 | 1216 | B.1.1.7 | 0.001089 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 898 | 898 | Q.7 | 0.997778 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 716 | 716 | B.1.617.2 | 0.002696 |
ORF1ab/nsp12 | 613 | H613R | cAC | cGT | 583 | 647 | All | 0.000112 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 64 | 647 | All | 0.000012 |
ORF1ab/nsp12 | 613 | H613R | cAC | cGT | 581 | 581 | B.1.1.7 | 0.00052 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 500 | 500 | AY.4 | 0.000778 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 254 | 254 | AY.5 | 0.005245 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 242 | 242 | AY.39 | 0.00598 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 214 | 214 | B.1.177.73 | 0.121178 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 195 | 195 | AY.29 | 0.003076 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 172 | 172 | AY.43 | 0.000762 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 151 | 151 | Q.6 | 1 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 121 | 125 | All | 0.000023 |
ORF1ab/nsp12 | 613 | H613Q | caC | caG | 4 | 125 | All | 0.000001 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 115 | 115 | AY.29 | 0.001814 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 104 | 104 | B.1.617.2 | 0.000392 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 97 | 97 | AY.103 | 0.000602 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 94 | 94 | B.1.177 | 0.001238 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 91 | 91 | AY.6 | 0.003743 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 87 | 87 | AY.44 | 0.00053 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 85 | 85 | AY.3 | 0.000845 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 83 | 83 | B.1.375 | 0.068033 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 80 | 80 | B.1.349 | 0.057184 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 79 | 79 | P.1 | 0.001245 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 78 | 78 | B.1.637 | 0.0057 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 76 | 76 | B.1.2 | 0.000669 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 76 | 76 | B.1.36 | 0.011088 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 72 | 72 | B.1.2 | 0.000634 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 70 | 70 | AY.44 | 0.000426 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 67 | 67 | B.1.1.311 | 0.023997 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 64 | 64 | AY.25 | 0.000385 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 64 | 64 | AY.43 | 0.000284 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 63 | 63 | B.1.2 | 0.000555 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 59 | 59 | Q.5 | 1 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 58 | 58 | B.1.177 | 0.000764 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 58 | 58 | B.1.526 | 0.001363 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 58 | 58 | B.1.6 | 1 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 53 | 53 | B.1.576 | 0.048051 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 48 | 50 | B.1 | 0.00044 |
ORF1ab/nsp12 | 613 | H613Y | CaC | TaT | 2 | 50 | B.1 | 0.000018 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 46 | 46 | B | 0.005879 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 44 | 44 | B.1.1 | 0.000798 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 43 | 43 | AY.100 | 0.001978 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 43 | 43 | AY.3 | 0.000428 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 43 | 43 | B.1.111 | 0.050529 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 42 | 42 | B.1.205 | 1 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 41 | 41 | B.1.1.409 | 0.116147 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 39 | 39 | B.1.177.7 | 0.006429 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 39 | 39 | P.1 | 0.000614 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 38 | 38 | B.1.1.222 | 0.007752 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 38 | 38 | B.1.36.29 | 0.019659 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 38 | 38 | B.1.596 | 0.003311 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 36 | 36 | AY.25 | 0.000217 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 36 | 36 | AY.26 | 0.001019 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 35 | 35 | B.1.258.14 | 0.034314 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 34 | 34 | All | 0.000007 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 34 | 34 | AY.1 | 0.013455 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 33 | 33 | B.1.429 | 0.000776 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 32 | 32 | All | 0.000006 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 31 | 31 | B.1.221 | 0.002202 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 30 | 30 | AY.98 | 0.00237 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 30 | 30 | B.1.258 | 0.001996 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 30 | 30 | B.1.351 | 0.000892 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 29 | 29 | AY.102 | 0.000769 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 29 | 29 | AY.120 | 0.001078 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 29 | 29 | AY.74 | 0.003354 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 29 | 29 | B.6 | 0.026388 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 28 | 28 | AY.41 | 0.00823 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 26 | 26 | B.1 | 0.000238 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 26 | 26 | B.1.1.519 | 0.001032 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 24 | 24 | B.1.177.43 | 0.035451 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 23 | 23 | AY.102 | 0.00061 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 22 | 22 | AY.103 | 0.000137 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 22 | 22 | AY.4.2 | 0.000477 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 22 | 22 | B.1.1.507 | 0.191304 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 22 | 22 | B.1.427 | 0.001111 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 21 | 21 | B.1.177.86 | 0.003853 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 21 | 21 | P.1.1 | 0.006671 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 20 | 20 | AY.39 | 0.000494 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 20 | 20 | AY.98.1 | 0.000969 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 18 | 18 | AY.33 | 0.001202 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 18 | 18 | AY.86 | 0.014938 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 18 | 18 | B.1.1.161 | 0.063604 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 18 | 18 | P.1.16 | 0.006734 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 17 | 17 | AY.47 | 0.000529 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 17 | 17 | B.1.1.317 | 0.006999 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 16 | 16 | AY.46.6 | 0.001155 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 16 | 16 | B.1.1.214 | 0.000887 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 16 | 16 | B.1.351 | 0.000476 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 16 | 16 | P.2 | 0.002986 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 15 | 15 | AY.26 | 0.000425 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 15 | 15 | AZ.2 | 0.012315 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 15 | 15 | B.1.1.220 | 0.027881 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 15 | 15 | B.1.258.17 | 0.00156 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 15 | 15 | B.1.526 | 0.000353 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 15 | 15 | B.1.637 | 0.001096 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 14 | 14 | AY.3.1 | 0.001194 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 14 | 14 | AY.35 | 0.003263 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 14 | 14 | C.37 | 0.001625 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 13 | 13 | B.1.1.39 | 0.006626 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 13 | 13 | B.1.177.21 | 0.000994 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 13 | 13 | B.1.258.17 | 0.001352 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 12 | 12 | B.1.215 | 0.115385 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 12 | 12 | B.1.609 | 0.005753 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 11 | 11 | 0.611111 | |
ORF1ab/nsp12 | 613 | H613del1 | caC | ca- | 6 | 11 | All | 0.000001 |
ORF1ab/nsp12 | 613 | H613del1 | cAc | c-c | 3 | 11 | All | 0.000001 |
ORF1ab/nsp12 | 613 | H613del1 | Cac | -ac | 1 | 11 | All | 0 |
ORF1ab/nsp12 | 613 | H613del1 | cAC | c-T | 1 | 11 | All | 0 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 11 | 11 | B.1.377 | 0.050228 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 11 | 11 | B.1.595 | 0.002871 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 10 | 10 | AY.114 | 0.002311 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 9 | 9 | AY.16 | 0.003417 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 9 | 9 | AY.99 | 0.009444 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 9 | 9 | B.1.1.1 | 0.00294 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 9 | 9 | B.1.509 | 0.007792 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 9 | 9 | B.6.6 | 0.008 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 9 | 9 | C.36.3 | 0.005105 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp12 | 613 | H613D | Cac | Gac | 8 | 8 | All | 0.000002 |
ORF1ab/nsp12 | 613 | H613L | cAC | cTT | 4 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 613 | H613L | cAc | cTc | 4 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 8 | 8 | AY.39.1 | 0.000317 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 8 | 8 | AY.59 | 0.004237 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 8 | 8 | B.1.1.432 | 0.010127 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 8 | 8 | B.1.1.528 | 0.038462 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 8 | 8 | P.1.12 | 0.003872 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | AY.109 | 0.005178 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | B.1.1.312 | 0.013384 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | B.1.1.58 | 0.037634 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | B.1.177.81 | 0.001325 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 7 | 7 | B.1.397 | 0.033981 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | B.1.411 | 0.025926 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | B.1.623 | 0.003755 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 7 | 7 | B.1.91 | 0.014523 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 7 | 7 | P.1.17 | 0.001132 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp12 | 613 | H613A | CAc | GCc | 6 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 6 | 6 | AY.52 | 0.004886 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 6 | 6 | B.1.1.63 | 0.002315 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 6 | 6 | B.1.139 | 0.004399 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 6 | 6 | B.1.241 | 0.00487 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp12 | 613 | H613A | CAc | GCc | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 5 | 5 | A.30 | 0.714286 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | B | 0.000639 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp12 | 613 | H613Q | caC | caG | 4 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | B.1.128 | 0.003177 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 5 | 5 | B.1.206 | 0.004078 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 5 | 5 | B.1.214.2 | 0.002998 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | B.1.413 | 0.021277 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | B.1.422 | 0.004062 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | B.1.465 | 0.019011 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 5 | 5 | C.18 | 0.012953 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | A | 0.001548 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp12 | 613 | H613D | Cac | Gac | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | AY.52 | 0.003257 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | AY.99.1 | 0.006211 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.1.10 | 0.004459 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.1.523 | 0.00625 |
ORF1ab/nsp12 | 613 | H613L | cAC | cTT | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.157 | 0.01194 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.177.17 | 0.003284 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.177.31 | 0.045977 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.177.32 | 0.005398 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.214 | 0.014652 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.564 | 0.001704 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | C.16 | 0.004242 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | AH.3 | 0.011407 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.1.205 | 0.011152 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.1.356 | 0.025641 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | B.1.1.528 | 0.014423 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | B.1.177.32 | 0.004049 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.177.41 | 0.0075 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | B.1.177.54 | 0.001819 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.237 | 0.014925 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | B.1.507 | 0.033708 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.580 | 0.012195 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.590 | 0.013636 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp12 | 613 | H613Y | CaC | TaT | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | A.2.5.3 | 0.020619 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 613 | H613del1 | caC | ca- | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp12 | 613 | H613del1 | cAC | c-T | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp12 | 613 | H613del1 | cAc | c-c | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 613 | H613del1 | caC | ca- | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.171 | 0.007353 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.209 | 0.017857 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.1.307 | 0.005063 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.417 | 0.005405 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.524 | 0.041667 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.1.525 | 0.010929 |
ORF1ab/nsp12 | 613 | H613del1 | caC | ca- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 613 | H613del1 | Cac | -ac | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.177.63 | 0.005405 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.214.3 | 0.014286 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.370 | 0.016 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.523 | 0.004902 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.533 | 0.019231 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.599 | 0.007299 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 613 | H613del1 | caC | ca- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 613 | H613D | Cac | Gac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | B.1.633 | 0.083333 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp12 | 613 | H613Y | CaC | TaT | 2 | 2 | Q.7 | 0.002222 |
ORF1ab/nsp12 | 613 | H613R | cAC | cGT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | A.7 | 0.055556 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp12 | 613 | H613del2 | cAC | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 613 | H613P | cAc | cCc | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp12 | 613 | H613D | Cac | Gac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 613 | H613D | Cac | Gac | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 613 | H613L | cAc | cTc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 613 | H613del1 | cAc | c-c | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.162 | 0.029412 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp12 | 613 | H613L | cAc | cTc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.364 | 0.066667 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.424 | 0.045455 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.437 | 0.010417 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | B.1.177.67 | 0.007634 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 613 | H613del1 | cAc | c-c | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.36.20 | 0.016949 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.36.23 | 0.016393 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp12 | 613 | H613L | cAc | cTc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.510 | 0.026316 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp12 | 613 | H613Q | caC | caA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 613 | H613del1 | caC | ca- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 613 | H613L | cAc | cTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 613 | H613R | cAc | cGc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp12 | 613 | H613del2 | cAC | c-- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 613 | H613N | Cac | Aac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 613 | H613P | cAc | cCc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp12 | 613 | H613H | caC | caT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp12 | 613 | H613Y | Cac | Tac | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp12 | 613 | H613Y | CaC | TaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 613 | H613del | CAC | --- | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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