CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 612 & Codon = ccC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12612P612PP5004PsynccTccC50103360.067065915274-15276

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12612P612PccTccC3365010All0.000064
ORF1ab/nsp12612P612PccTccC41054B.10.000037
ORF1ab/nsp12612P612PccTccC696B.1.20.000053
ORF1ab/nsp12612P612PccTccC4964AY.40.000076
ORF1ab/nsp12612P612PccTccC4646B.1.5260.001081
ORF1ab/nsp12612P612PccTccC3245B.1.1.70.000029
ORF1ab/nsp12612P612PccTccC2727AY.410.007937
ORF1ab/nsp12612P612PccTccC927B.1.617.20.000034
ORF1ab/nsp12612P612PccTccC2525AY.140.0022
ORF1ab/nsp12612P612PccTccC2325AY.250.000138
ORF1ab/nsp12612P612PccTccC1818B.1.1.3060.007891
ORF1ab/nsp12612P612PccTccC116B.1.10.000018
ORF1ab/nsp12612P612PccTccC1314AY.440.000079
ORF1ab/nsp12612P612PccTccC88AY.430.000035
ORF1ab/nsp12612P612PccTccC88B.1.6130.216216
ORF1ab/nsp12612P612PccTccC88P.10.000126
ORF1ab/nsp12612P612PccTccC56B.1.1770.000066
ORF1ab/nsp12612P612PccTccC45AY.260.000113
ORF1ab/nsp12612P612PccTccC34B.1.466.20.001174
ORF1ab/nsp12612P612PccTccC33B.1.1.2840.000322
ORF1ab/nsp12612P612PccTccC13B.1.2340.000132
ORF1ab/nsp12612P612PccTccC33B.1.5380.024194
ORF1ab/nsp12612P612PccTccC33B.1.5650.002431
ORF1ab/nsp12612P612PccTccC12AY.1030.000006
ORF1ab/nsp12612P612PccTccC22AY.270.000129
ORF1ab/nsp12612P612PccTccC22AY.290.000032
ORF1ab/nsp12612P612PccTccC22AY.30.00002
ORF1ab/nsp12612P612PccTccC22AY.750.000112
ORF1ab/nsp12612P612PccTccC12AY.90.000068
ORF1ab/nsp12612P612PccTccC22AY.99.20.000184
ORF1ab/nsp12612P612PccTccC12B.1.3510.00003
ORF1ab/nsp12612P612PccTccC22B.1.6230.001073
ORF1ab/nsp12612P612PccTccC11A.50.001923
ORF1ab/nsp12612P612PccTccC11AM.30.033333
ORF1ab/nsp12612P612PccTccC11AY.1090.00074
ORF1ab/nsp12612P612PccTccC11AY.1160.000287
ORF1ab/nsp12612P612PccTccC11AY.1190.000035
ORF1ab/nsp12612P612PccTccC11AY.160.00038
ORF1ab/nsp12612P612PccTccC11AY.230.00007
ORF1ab/nsp12612P612PccTccC11AY.420.00004
ORF1ab/nsp12612P612PccTccC11AY.540.000095
ORF1ab/nsp12612P612PccTccC11AY.9.20.000037
ORF1ab/nsp12612P612PccTccC11AY.98.10.000048
ORF1ab/nsp12612P612PccTccC11B0.000128
ORF1ab/nsp12612P612PccTccC11B.1.177.120.000152
ORF1ab/nsp12612P612PccTccC11B.1.177.40.000211
ORF1ab/nsp12612P612PccTccC11B.1.2210.000071
ORF1ab/nsp12612P612PccTccC11B.1.3240.001605
ORF1ab/nsp12612P612PccTccC11B.1.4690.00361
ORF1ab/nsp12612P612PccTccC11B.1.5090.000866
ORF1ab/nsp12612P612PccTccC11P.1.150.000232
ORF1ab/nsp12612P612PccTccC11P.1.170.000162
ORF1ab/nsp12612P612PccTccC11P.1.40.000977
ORF1ab/nsp12612P612PccTccC11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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