CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 612 & Codon = ccA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12612P612PP5004PsynccTccA501046010.91836315274-15276

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12612P612PccTccA46015010All0.00088
ORF1ab/nsp12612P612PccTccA19411941B.1.5820.952404
ORF1ab/nsp12612P612PccTccA10491054B.10.009608
ORF1ab/nsp12612P612PccTccA846846B.1.5680.94
ORF1ab/nsp12612P612PccTccA375375B.1.6120.994695
ORF1ab/nsp12612P612PccTccA100100B.1.5810.943396
ORF1ab/nsp12612P612PccTccA8696B.1.20.000757
ORF1ab/nsp12612P612PccTccA1064AY.40.000016
ORF1ab/nsp12612P612PccTccA4444B.1.5960.003834
ORF1ab/nsp12612P612PccTccA127B.1.617.20.000004
ORF1ab/nsp12612P612PccTccA125AY.250.000006
ORF1ab/nsp12612P612PccTccA1516B.1.10.000272
ORF1ab/nsp12612P612PccTccA114AY.440.000006
ORF1ab/nsp12612P612PccTccA1212B.1.1.3500.48
ORF1ab/nsp12612P612PccTccA1212B.1.5170.005124
ORF1ab/nsp12612P612PccTccA88B.1.3690.002282
ORF1ab/nsp12612P612PccTccA77B.1.5760.006346
ORF1ab/nsp12612P612PccTccA16B.1.1770.000013
ORF1ab/nsp12612P612PccTccA66B.1.4510.04918
ORF1ab/nsp12612P612PccTccA66B.1.5640.002555
ORF1ab/nsp12612P612PccTccA15AY.260.000028
ORF1ab/nsp12612P612PccTccA55B.1.2060.004078
ORF1ab/nsp12612P612PccTccA55B.1.5800.020325
ORF1ab/nsp12612P612PccTccA44AY.4.50.00043
ORF1ab/nsp12612P612PccTccA44B.1.1.4320.005063
ORF1ab/nsp12612P612PccTccA44B.1.2840.052632
ORF1ab/nsp12612P612PccTccA14B.1.466.20.000391
ORF1ab/nsp12612P612PccTccA44B.1.5770.002749
ORF1ab/nsp12612P612PccTccA44B.1.5950.001044
ORF1ab/nsp12612P612PccTccA23B.1.2340.000264
ORF1ab/nsp12612P612PccTccA33B.1.36.220.003623
ORF1ab/nsp12612P612PccTccA33B.1.3960.002117
ORF1ab/nsp12612P612PccTccA12AY.90.000068
ORF1ab/nsp12612P612PccTccA22B.1.1.2580.006515
ORF1ab/nsp12612P612PccTccA22B.1.1.3350.025974
ORF1ab/nsp12612P612PccTccA22B.1.1390.001466
ORF1ab/nsp12612P612PccTccA22B.1.177.650.001331
ORF1ab/nsp12612P612PccTccA12B.1.2400.000216
ORF1ab/nsp12612P612PccTccA22B.1.2430.000139
ORF1ab/nsp12612P612PccTccA22B.1.3670.001585
ORF1ab/nsp12612P612PccTccA22B.1.5210.00995
ORF1ab/nsp12612P612PccTccA22B.1.5460.007407
ORF1ab/nsp12612P612PccTccA22B.1.6060.012048
ORF1ab/nsp12612P612PccTccA11AY.240.000431
ORF1ab/nsp12612P612PccTccA11B.1.1.2100.005714
ORF1ab/nsp12612P612PccTccA11B.1.1.2260.005814
ORF1ab/nsp12612P612PccTccA11B.1.1.2300.009174
ORF1ab/nsp12612P612PccTccA11B.1.1.4660.008696
ORF1ab/nsp12612P612PccTccA11B.1.2320.000537
ORF1ab/nsp12612P612PccTccA11B.1.3050.002151
ORF1ab/nsp12612P612PccTccA11B.1.3360.002439
ORF1ab/nsp12612P612PccTccA11B.1.3500.002933
ORF1ab/nsp12612P612PccTccA11B.1.3610.001289
ORF1ab/nsp12612P612PccTccA11B.1.3630.012987
ORF1ab/nsp12612P612PccTccA11B.1.3700.008
ORF1ab/nsp12612P612PccTccA11B.1.4240.008065
ORF1ab/nsp12612P612PccTccA11B.1.4430.004673
ORF1ab/nsp12612P612PccTccA11B.1.5660.019231
ORF1ab/nsp12612P612PccTccA11B.1.5870.001898
ORF1ab/nsp12612P612PccTccA11B.1.5890.007576
ORF1ab/nsp12612P612PccTccA11B.1.6270.00202
ORF1ab/nsp12612P612PccTccA11B.1.6340.003425
ORF1ab/nsp12612P612PccTccA11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.