CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 612

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12612P612PP5004PsynccTccA501046010.91836315274-15276
ORF1ab/nsp12612P612PP5004PsynccTccC50103360.067065915274-15276
ORF1ab/nsp12612P612PP5004PsynccTccG5010730.014570915274-15276
ORF1ab/nsp12612P612SP5004SnonsynCctTct2062050.99514615274-15276
ORF1ab/nsp12612P612SP5004SnonsynCCtAGt20610.0048543715274-15276
ORF1ab/nsp12612P612delP5004deldelCCT---3131115274-15276
ORF1ab/nsp12612P612HP5004HnonsyncCtcAt21200.95238115274-15276
ORF1ab/nsp12612P612HP5004HnonsyncCTcAC2110.04761915274-15276
ORF1ab/nsp12612P612TP5004TnonsynCctAct55115274-15276
ORF1ab/nsp12612P612LP5004LnonsyncCtcTt430.7515274-15276
ORF1ab/nsp12612P612LP5004LnonsynCCTTTA410.2515274-15276
ORF1ab/nsp12612P612RP5004RnonsyncCtcGt22115274-15276
ORF1ab/nsp12612P612del1P5004del1delccTcc-11115274-15276
ORF1ab/nsp12612P612CP5004CnonsynCCtTGt11115274-15276
ORF1ab/nsp12612P612del2P5004del2delCCT--C11115274-15276

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12612P612PccTccA46015010All0.00088
ORF1ab/nsp12612P612PccTccC3365010All0.000064
ORF1ab/nsp12612P612PccTccG735010All0.000014
ORF1ab/nsp12612P612PccTccA19411941B.1.5820.952404
ORF1ab/nsp12612P612PccTccA10491054B.10.009608
ORF1ab/nsp12612P612PccTccC41054B.10.000037
ORF1ab/nsp12612P612PccTccG11054B.10.000009
ORF1ab/nsp12612P612PccTccA846846B.1.5680.94
ORF1ab/nsp12612P612PccTccA375375B.1.6120.994695
ORF1ab/nsp12612P612SCctTct205206All0.000039
ORF1ab/nsp12612P612SCCtAGt1206All0
ORF1ab/nsp12612P612PccTccA100100B.1.5810.943396
ORF1ab/nsp12612P612PccTccA8696B.1.20.000757
ORF1ab/nsp12612P612PccTccC696B.1.20.000053
ORF1ab/nsp12612P612PccTccG496B.1.20.000035
ORF1ab/nsp12612P612PccTccC4964AY.40.000076
ORF1ab/nsp12612P612PccTccA1064AY.40.000016
ORF1ab/nsp12612P612PccTccG564AY.40.000008
ORF1ab/nsp12612P612PccTccC4646B.1.5260.001081
ORF1ab/nsp12612P612PccTccC3245B.1.1.70.000029
ORF1ab/nsp12612P612PccTccG1345B.1.1.70.000012
ORF1ab/nsp12612P612SCctTct4444AY.40.000068
ORF1ab/nsp12612P612PccTccA4444B.1.5960.003834
ORF1ab/nsp12612P612SCctTct3232AY.1030.000199
ORF1ab/nsp12612P612delCCT---3131All0.000006
ORF1ab/nsp12612P612PccTccC2727AY.410.007937
ORF1ab/nsp12612P612PccTccG1727B.1.617.20.000064
ORF1ab/nsp12612P612PccTccC927B.1.617.20.000034
ORF1ab/nsp12612P612PccTccA127B.1.617.20.000004
ORF1ab/nsp12612P612PccTccC2525AY.140.0022
ORF1ab/nsp12612P612PccTccC2325AY.250.000138
ORF1ab/nsp12612P612PccTccG125AY.250.000006
ORF1ab/nsp12612P612PccTccA125AY.250.000006
ORF1ab/nsp12612P612SCctTct2222B.1.617.20.000083
ORF1ab/nsp12612P612HcCtcAt2021All0.000004
ORF1ab/nsp12612P612HcCTcAC121All0
ORF1ab/nsp12612P612PccTccC1818B.1.1.3060.007891
ORF1ab/nsp12612P612PccTccA1516B.1.10.000272
ORF1ab/nsp12612P612PccTccC116B.1.10.000018
ORF1ab/nsp12612P612PccTccG1414AY.1000.000644
ORF1ab/nsp12612P612SCctTct1414AY.390.000346
ORF1ab/nsp12612P612PccTccC1314AY.440.000079
ORF1ab/nsp12612P612PccTccA114AY.440.000006
ORF1ab/nsp12612P612delCCT---1414B.1.1.70.000013
ORF1ab/nsp12612P612PccTccA1212B.1.1.3500.48
ORF1ab/nsp12612P612PccTccA1212B.1.5170.005124
ORF1ab/nsp12612P612SCctTct1111AY.200.000428
ORF1ab/nsp12612P612SCctTct1111AY.30.000109
ORF1ab/nsp12612P612SCctTct1111AY.330.000735
ORF1ab/nsp12612P612SCctTct1010AY.250.00006
ORF1ab/nsp12612P612PccTccC88AY.430.000035
ORF1ab/nsp12612P612PccTccA88B.1.3690.002282
ORF1ab/nsp12612P612PccTccC88B.1.6130.216216
ORF1ab/nsp12612P612PccTccC88P.10.000126
ORF1ab/nsp12612P612HcCtcAt77AY.40.000011
ORF1ab/nsp12612P612PccTccA77B.1.5760.006346
ORF1ab/nsp12612P612PccTccG66AY.390.000148
ORF1ab/nsp12612P612SCctTct66AY.430.000027
ORF1ab/nsp12612P612SCctTct56B.1.1.70.000004
ORF1ab/nsp12612P612SCCtAGt16B.1.1.70.000001
ORF1ab/nsp12612P612PccTccC56B.1.1770.000066
ORF1ab/nsp12612P612PccTccA16B.1.1770.000013
ORF1ab/nsp12612P612PccTccA66B.1.4510.04918
ORF1ab/nsp12612P612PccTccA66B.1.5640.002555
ORF1ab/nsp12612P612TCctAct55All0.000001
ORF1ab/nsp12612P612PccTccC45AY.260.000113
ORF1ab/nsp12612P612PccTccA15AY.260.000028
ORF1ab/nsp12612P612SCctTct55AY.440.00003
ORF1ab/nsp12612P612PccTccA55B.1.2060.004078
ORF1ab/nsp12612P612PccTccA55B.1.5800.020325
ORF1ab/nsp12612P612LcCtcTt34All0.000001
ORF1ab/nsp12612P612LCCTTTA14All0
ORF1ab/nsp12612P612SCctTct44AY.4.50.00043
ORF1ab/nsp12612P612PccTccA44AY.4.50.00043
ORF1ab/nsp12612P612SCctTct44AY.60.000165
ORF1ab/nsp12612P612PccTccA44B.1.1.4320.005063
ORF1ab/nsp12612P612PccTccA44B.1.2840.052632
ORF1ab/nsp12612P612PccTccC34B.1.466.20.001174
ORF1ab/nsp12612P612PccTccA14B.1.466.20.000391
ORF1ab/nsp12612P612PccTccA44B.1.5770.002749
ORF1ab/nsp12612P612PccTccA44B.1.5950.001044
ORF1ab/nsp12612P612SCctTct33AY.1020.00008
ORF1ab/nsp12612P612PccTccG33AY.1170.000254
ORF1ab/nsp12612P612HcCtcAt33B.10.000027
ORF1ab/nsp12612P612PccTccC33B.1.1.2840.000322
ORF1ab/nsp12612P612PccTccA23B.1.2340.000264
ORF1ab/nsp12612P612PccTccC13B.1.2340.000132
ORF1ab/nsp12612P612PccTccA33B.1.36.220.003623
ORF1ab/nsp12612P612PccTccA33B.1.3960.002117
ORF1ab/nsp12612P612PccTccC33B.1.5380.024194
ORF1ab/nsp12612P612PccTccC33B.1.5650.002431
ORF1ab/nsp12612P612RcCtcGt22All0
ORF1ab/nsp12612P612PccTccG12AY.1030.000006
ORF1ab/nsp12612P612PccTccC12AY.1030.000006
ORF1ab/nsp12612P612SCctTct22AY.230.000139
ORF1ab/nsp12612P612PccTccC22AY.270.000129
ORF1ab/nsp12612P612PccTccC22AY.290.000032
ORF1ab/nsp12612P612PccTccC22AY.30.00002
ORF1ab/nsp12612P612SCctTct22AY.50.000041
ORF1ab/nsp12612P612SCctTct22AY.70.000392
ORF1ab/nsp12612P612PccTccC22AY.750.000112
ORF1ab/nsp12612P612PccTccC12AY.90.000068
ORF1ab/nsp12612P612PccTccA12AY.90.000068
ORF1ab/nsp12612P612PccTccC22AY.99.20.000184
ORF1ab/nsp12612P612SCctTct22B.10.000018
ORF1ab/nsp12612P612PccTccA22B.1.1.2580.006515
ORF1ab/nsp12612P612PccTccA22B.1.1.3350.025974
ORF1ab/nsp12612P612HcCtcAt12B.1.1.70.000001
ORF1ab/nsp12612P612HcCTcAC12B.1.1.70.000001
ORF1ab/nsp12612P612PccTccA22B.1.1390.001466
ORF1ab/nsp12612P612PccTccA22B.1.177.650.001331
ORF1ab/nsp12612P612PccTccG12B.1.2400.000216
ORF1ab/nsp12612P612PccTccA12B.1.2400.000216
ORF1ab/nsp12612P612PccTccA22B.1.2430.000139
ORF1ab/nsp12612P612PccTccG12B.1.3510.00003
ORF1ab/nsp12612P612PccTccC12B.1.3510.00003
ORF1ab/nsp12612P612PccTccA22B.1.3670.001585
ORF1ab/nsp12612P612PccTccA22B.1.5210.00995
ORF1ab/nsp12612P612PccTccA22B.1.5460.007407
ORF1ab/nsp12612P612PccTccA22B.1.6060.012048
ORF1ab/nsp12612P612PccTccC22B.1.6230.001073
ORF1ab/nsp12612P612SCctTct11A.2.30.004739
ORF1ab/nsp12612P612PccTccC11A.50.001923
ORF1ab/nsp12612P612delCCT---11AD.20.000219
ORF1ab/nsp12612P612SCctTct11AK.10.012658
ORF1ab/nsp12612P612del1ccTcc-11All0
ORF1ab/nsp12612P612del2CCT--C11All0
ORF1ab/nsp12612P612CCCtTGt11All0
ORF1ab/nsp12612P612PccTccC11AM.30.033333
ORF1ab/nsp12612P612PccTccG11AY.1020.000027
ORF1ab/nsp12612P612PccTccC11AY.1090.00074
ORF1ab/nsp12612P612SCctTct11AY.1130.000142
ORF1ab/nsp12612P612PccTccC11AY.1160.000287
ORF1ab/nsp12612P612PccTccC11AY.1190.000035
ORF1ab/nsp12612P612HcCtcAt11AY.1200.000037
ORF1ab/nsp12612P612PccTccG11AY.120.10.000321
ORF1ab/nsp12612P612PccTccC11AY.160.00038
ORF1ab/nsp12612P612PccTccC11AY.230.00007
ORF1ab/nsp12612P612HcCtcAt11AY.240.000431
ORF1ab/nsp12612P612PccTccA11AY.240.000431
ORF1ab/nsp12612P612delCCT---11AY.250.000006
ORF1ab/nsp12612P612SCctTct11AY.260.000028
ORF1ab/nsp12612P612SCctTct11AY.3.10.000085
ORF1ab/nsp12612P612delCCT---11AY.340.000097
ORF1ab/nsp12612P612TCctAct11AY.390.000025
ORF1ab/nsp12612P612SCctTct11AY.4.20.000022
ORF1ab/nsp12612P612HcCtcAt11AY.4.20.000022
ORF1ab/nsp12612P612delCCT---11AY.4.50.000107
ORF1ab/nsp12612P612PccTccC11AY.420.00004
ORF1ab/nsp12612P612delCCT---11AY.430.000004
ORF1ab/nsp12612P612del2CCT--C11AY.440.000006
ORF1ab/nsp12612P612PccTccG11AY.46.60.000072
ORF1ab/nsp12612P612LcCtcTt11AY.50.000021
ORF1ab/nsp12612P612SCctTct11AY.510.000909
ORF1ab/nsp12612P612PccTccC11AY.540.000095
ORF1ab/nsp12612P612SCctTct11AY.540.000095
ORF1ab/nsp12612P612HcCtcAt11AY.60.000041
ORF1ab/nsp12612P612PccTccG11AY.610.000105
ORF1ab/nsp12612P612SCctTct11AY.750.000056
ORF1ab/nsp12612P612delCCT---11AY.75.10.00018
ORF1ab/nsp12612P612PccTccC11AY.9.20.000037
ORF1ab/nsp12612P612PccTccC11AY.98.10.000048
ORF1ab/nsp12612P612SCctTct11AY.99.20.000092
ORF1ab/nsp12612P612HcCtcAt11B0.000128
ORF1ab/nsp12612P612PccTccC11B0.000128
ORF1ab/nsp12612P612TCctAct11B.10.000009
ORF1ab/nsp12612P612SCctTct11B.1.10.000018
ORF1ab/nsp12612P612RcCtcGt11B.1.10.000018
ORF1ab/nsp12612P612CCCtTGt11B.1.10.000018
ORF1ab/nsp12612P612PccTccA11B.1.1.2100.005714
ORF1ab/nsp12612P612PccTccA11B.1.1.2260.005814
ORF1ab/nsp12612P612PccTccA11B.1.1.2300.009174
ORF1ab/nsp12612P612PccTccA11B.1.1.4660.008696
ORF1ab/nsp12612P612TCctAct11B.1.1.70.000001
ORF1ab/nsp12612P612LcCtcTt11B.1.1.70.000001
ORF1ab/nsp12612P612delCCT---11B.1.1.700.000341
ORF1ab/nsp12612P612HcCtcAt11B.1.1.700.000341
ORF1ab/nsp12612P612SCctTct11B.1.1.980.018519
ORF1ab/nsp12612P612delCCT---11B.1.1400.018868
ORF1ab/nsp12612P612delCCT---11B.1.160.230.004831
ORF1ab/nsp12612P612HcCtcAt11B.1.1770.000013
ORF1ab/nsp12612P612delCCT---11B.1.1770.000013
ORF1ab/nsp12612P612PccTccC11B.1.177.120.000152
ORF1ab/nsp12612P612delCCT---11B.1.177.160.000664
ORF1ab/nsp12612P612PccTccC11B.1.177.40.000211
ORF1ab/nsp12612P612PccTccG11B.1.177.440.000519
ORF1ab/nsp12612P612delCCT---11B.1.177.50.001242
ORF1ab/nsp12612P612delCCT---11B.1.177.540.000606
ORF1ab/nsp12612P612delCCT---11B.1.177.90.001332
ORF1ab/nsp12612P612del1ccTcc-11B.1.20.000009
ORF1ab/nsp12612P612SCctTct11B.1.20.000009
ORF1ab/nsp12612P612LcCtcTt11B.1.20.000009
ORF1ab/nsp12612P612PccTccC11B.1.2210.000071
ORF1ab/nsp12612P612PccTccA11B.1.2320.000537
ORF1ab/nsp12612P612PccTccA11B.1.3050.002151
ORF1ab/nsp12612P612PccTccC11B.1.3240.001605
ORF1ab/nsp12612P612PccTccA11B.1.3360.002439
ORF1ab/nsp12612P612PccTccA11B.1.3500.002933
ORF1ab/nsp12612P612PccTccA11B.1.3610.001289
ORF1ab/nsp12612P612PccTccA11B.1.3630.012987
ORF1ab/nsp12612P612PccTccA11B.1.3700.008
ORF1ab/nsp12612P612PccTccG11B.1.3890.001002
ORF1ab/nsp12612P612delCCT---11B.1.4150.014286
ORF1ab/nsp12612P612PccTccA11B.1.4240.008065
ORF1ab/nsp12612P612PccTccA11B.1.4430.004673
ORF1ab/nsp12612P612PccTccC11B.1.4690.00361
ORF1ab/nsp12612P612TCctAct11B.1.4700.001404
ORF1ab/nsp12612P612PccTccC11B.1.5090.000866
ORF1ab/nsp12612P612PccTccA11B.1.5660.019231
ORF1ab/nsp12612P612PccTccA11B.1.5870.001898
ORF1ab/nsp12612P612PccTccA11B.1.5890.007576
ORF1ab/nsp12612P612LCCTTTA11B.1.617.10.000129
ORF1ab/nsp12612P612delCCT---11B.1.617.20.000004
ORF1ab/nsp12612P612TCctAct11B.1.617.20.000004
ORF1ab/nsp12612P612SCctTct11B.1.6210.000089
ORF1ab/nsp12612P612PccTccA11B.1.6270.00202
ORF1ab/nsp12612P612PccTccA11B.1.6340.003425
ORF1ab/nsp12612P612HcCtcAt11B.60.00091
ORF1ab/nsp12612P612HcCtcAt11B.6.60.000889
ORF1ab/nsp12612P612PccTccA11C.370.000116
ORF1ab/nsp12612P612RcCtcGt11D.20.000075
ORF1ab/nsp12612P612PccTccC11P.1.150.000232
ORF1ab/nsp12612P612PccTccC11P.1.170.000162
ORF1ab/nsp12612P612PccTccC11P.1.40.000977
ORF1ab/nsp12612P612PccTccC11P.20.000187
ORF1ab/nsp12612P612SCctTct11P.20.000187
ORF1ab/nsp12612P612delCCT---11Q.80.000165