CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 607 | S607I | S4999I | nonsyn | aGt | aTt | 1190 | 1190 | 1 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607R | S4999R | nonsyn | agT | agA | 358 | 344 | 0.960894 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607R | S4999R | nonsyn | Agt | Cgt | 358 | 8 | 0.0223464 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607R | S4999R | nonsyn | agT | agG | 358 | 6 | 0.0167598 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607S | S4999S | syn | agT | agC | 236 | 236 | 1 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607N | S4999N | nonsyn | aGt | aAt | 201 | 201 | 1 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607G | S4999G | nonsyn | Agt | Ggt | 118 | 118 | 1 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607del | S4999del | del | AGT | --- | 28 | 28 | 1 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607C | S4999C | nonsyn | Agt | Tgt | 14 | 13 | 0.928571 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607C | S4999C | nonsyn | AgT | TgC | 14 | 1 | 0.0714286 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607T | S4999T | nonsyn | aGt | aCt | 11 | 11 | 1 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607del1 | S4999del1 | del | aGt | a-t | 6 | 2 | 0.333333 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607del1 | S4999del1 | del | Agt | -gt | 6 | 2 | 0.333333 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607del1 | S4999del1 | del | agT | ag- | 6 | 2 | 0.333333 | 15259-15261 |
ORF1ab/nsp12 | 607 | S607D | S4999D | nonsyn | AGt | GAt | 4 | 4 | 1 | 15259-15261 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1190 | 1190 | All | 0.000228 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 344 | 358 | All | 0.000066 |
ORF1ab/nsp12 | 607 | S607R | Agt | Cgt | 8 | 358 | All | 0.000002 |
ORF1ab/nsp12 | 607 | S607R | agT | agG | 6 | 358 | All | 0.000001 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 297 | 297 | B.1.1.232 | 0.53902 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 236 | 236 | All | 0.000045 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 201 | 201 | All | 0.000038 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 143 | 143 | B.1.1.317 | 0.058872 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 124 | 127 | B.1.1.7 | 0.000111 |
ORF1ab/nsp12 | 607 | S607R | agT | agG | 2 | 127 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 607 | S607R | Agt | Cgt | 1 | 127 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 118 | 118 | All | 0.000023 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 115 | 115 | B.1.1.7 | 0.000103 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 107 | 107 | AY.4 | 0.000167 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 81 | 81 | AY.4 | 0.000126 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 66 | 66 | AY.4.2 | 0.001431 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 60 | 60 | B.1.1.312 | 0.114723 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 58 | 58 | AY.2 | 0.020655 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 56 | 56 | AY.4.5 | 0.00602 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 53 | 53 | B.1 | 0.000485 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 53 | 53 | B.1.177.73 | 0.030011 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 48 | 48 | AY.25 | 0.000289 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 44 | 44 | AY.44 | 0.000268 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 42 | 42 | B.1.617.2 | 0.000158 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 41 | 41 | B.1.617.2 | 0.000154 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 36 | 36 | AY.3 | 0.000358 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 35 | 35 | AY.43 | 0.000155 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 32 | 32 | AY.4 | 0.00005 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 31 | 31 | AY.44 | 0.000189 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 28 | 28 | All | 0.000005 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 16 | 16 | AY.55 | 0.014679 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 15 | 15 | AY.39.1 | 0.000594 |
ORF1ab/nsp12 | 607 | S607C | Agt | Tgt | 13 | 14 | All | 0.000002 |
ORF1ab/nsp12 | 607 | S607C | AgT | TgC | 1 | 14 | All | 0 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 14 | 14 | AY.29 | 0.000221 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 13 | 13 | AY.110 | 0.001465 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp12 | 607 | S607T | aGt | aCt | 11 | 11 | All | 0.000002 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 11 | 11 | AY.96 | 0.022822 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 9 | 9 | B.1.1.291 | 0.006682 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 8 | 8 | AD.2 | 0.001752 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp12 | 607 | S607del1 | Agt | -gt | 2 | 6 | All | 0 |
ORF1ab/nsp12 | 607 | S607del1 | aGt | a-t | 2 | 6 | All | 0 |
ORF1ab/nsp12 | 607 | S607del1 | agT | ag- | 2 | 6 | All | 0 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 6 | 6 | AY.16 | 0.002278 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 5 | 5 | AU.1 | 0.006329 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp12 | 607 | S607R | agT | agG | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 5 | 5 | B.1.1.135 | 0.023474 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 5 | 5 | B.1.628 | 0.001762 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp12 | 607 | S607D | AGt | GAt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 4 | 4 | AY.24 | 0.001724 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 607 | S607R | Agt | Cgt | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 607 | S607C | Agt | Tgt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 607 | S607R | Agt | Cgt | 4 | 4 | P.1.2 | 0.004624 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 4 | 4 | P.1.2 | 0.004624 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 3 | 3 | AY.89 | 0.014706 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 3 | 3 | B.1.160.31 | 0.024194 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 3 | 3 | B.1.302 | 0.04 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp12 | 607 | S607C | Agt | Tgt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 607 | S607T | aGt | aCt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp12 | 607 | S607T | aGt | aCt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp12 | 607 | S607C | Agt | Tgt | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 2 | 2 | B.1.438 | 0.013072 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 607 | S607R | agT | agG | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 607 | S607T | aGt | aCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 607 | S607C | Agt | Tgt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 607 | S607T | aGt | aCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 607 | S607C | AgT | TgC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 607 | S607D | AGt | GAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 607 | S607T | aGt | aCt | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 607 | S607D | AGt | GAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 607 | S607C | Agt | Tgt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 607 | S607D | AGt | GAt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 607 | S607del1 | aGt | a-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 607 | S607T | aGt | aCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 607 | S607del1 | Agt | -gt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 607 | S607T | aGt | aCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 607 | S607R | Agt | Cgt | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 607 | S607C | Agt | Tgt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 607 | S607C | Agt | Tgt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 607 | S607del1 | agT | ag- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 607 | S607D | AGt | GAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 607 | S607T | aGt | aCt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 607 | S607R | agT | agG | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 607 | S607T | aGt | aCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp12 | 607 | S607del1 | agT | ag- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp12 | 607 | S607R | agT | agG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 607 | S607del1 | Agt | -gt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | B.1.258.18 | 0.1 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 607 | S607R | agT | agA | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.578 | 0.017857 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 607 | S607del1 | aGt | a-t | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 607 | S607R | Agt | Cgt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 607 | S607G | Agt | Ggt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 607 | S607del | AGT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 607 | S607S | agT | agC | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 607 | S607N | aGt | aAt | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 607 | S607I | aGt | aTt | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp12 | 607 | S607C | Agt | Tgt | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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