CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 607

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12607S607IS4999InonsynaGtaTt11901190115259-15261
ORF1ab/nsp12607S607RS4999RnonsynagTagA3583440.96089415259-15261
ORF1ab/nsp12607S607RS4999RnonsynAgtCgt35880.022346415259-15261
ORF1ab/nsp12607S607RS4999RnonsynagTagG35860.016759815259-15261
ORF1ab/nsp12607S607SS4999SsynagTagC236236115259-15261
ORF1ab/nsp12607S607NS4999NnonsynaGtaAt201201115259-15261
ORF1ab/nsp12607S607GS4999GnonsynAgtGgt118118115259-15261
ORF1ab/nsp12607S607delS4999deldelAGT---2828115259-15261
ORF1ab/nsp12607S607CS4999CnonsynAgtTgt14130.92857115259-15261
ORF1ab/nsp12607S607CS4999CnonsynAgTTgC1410.071428615259-15261
ORF1ab/nsp12607S607TS4999TnonsynaGtaCt1111115259-15261
ORF1ab/nsp12607S607del1S4999del1delaGta-t620.33333315259-15261
ORF1ab/nsp12607S607del1S4999del1delAgt-gt620.33333315259-15261
ORF1ab/nsp12607S607del1S4999del1delagTag-620.33333315259-15261
ORF1ab/nsp12607S607DS4999DnonsynAGtGAt44115259-15261

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12607S607IaGtaTt11901190All0.000228
ORF1ab/nsp12607S607RagTagA344358All0.000066
ORF1ab/nsp12607S607RAgtCgt8358All0.000002
ORF1ab/nsp12607S607RagTagG6358All0.000001
ORF1ab/nsp12607S607IaGtaTt297297B.1.1.2320.53902
ORF1ab/nsp12607S607SagTagC236236All0.000045
ORF1ab/nsp12607S607NaGtaAt201201All0.000038
ORF1ab/nsp12607S607RagTagA143143B.1.1.3170.058872
ORF1ab/nsp12607S607RagTagA124127B.1.1.70.000111
ORF1ab/nsp12607S607RagTagG2127B.1.1.70.000002
ORF1ab/nsp12607S607RAgtCgt1127B.1.1.70.000001
ORF1ab/nsp12607S607GAgtGgt118118All0.000023
ORF1ab/nsp12607S607IaGtaTt115115B.1.1.70.000103
ORF1ab/nsp12607S607IaGtaTt107107AY.40.000167
ORF1ab/nsp12607S607GAgtGgt8181AY.40.000126
ORF1ab/nsp12607S607NaGtaAt6666AY.4.20.001431
ORF1ab/nsp12607S607IaGtaTt6060B.1.1.3120.114723
ORF1ab/nsp12607S607SagTagC5858AY.20.020655
ORF1ab/nsp12607S607IaGtaTt5656AY.4.50.00602
ORF1ab/nsp12607S607IaGtaTt5353B.10.000485
ORF1ab/nsp12607S607RagTagA5353B.1.177.730.030011
ORF1ab/nsp12607S607IaGtaTt4848AY.250.000289
ORF1ab/nsp12607S607IaGtaTt4444AY.440.000268
ORF1ab/nsp12607S607NaGtaAt4242B.1.617.20.000158
ORF1ab/nsp12607S607IaGtaTt4141B.1.617.20.000154
ORF1ab/nsp12607S607IaGtaTt3636AY.30.000358
ORF1ab/nsp12607S607IaGtaTt3535AY.430.000155
ORF1ab/nsp12607S607SagTagC3232AY.40.00005
ORF1ab/nsp12607S607SagTagC3131AY.440.000189
ORF1ab/nsp12607S607delAGT---2828All0.000005
ORF1ab/nsp12607S607SagTagC2626B.1.617.20.000098
ORF1ab/nsp12607S607NaGtaAt2323AY.40.000036
ORF1ab/nsp12607S607IaGtaTt2020B.1.20.000176
ORF1ab/nsp12607S607GAgtGgt1616AY.550.014679
ORF1ab/nsp12607S607IaGtaTt1515AY.39.10.000594
ORF1ab/nsp12607S607CAgtTgt1314All0.000002
ORF1ab/nsp12607S607CAgTTgC114All0
ORF1ab/nsp12607S607IaGtaTt1414AY.290.000221
ORF1ab/nsp12607S607IaGtaTt1313AY.1100.001465
ORF1ab/nsp12607S607IaGtaTt1212AY.1020.000318
ORF1ab/nsp12607S607SagTagC1212AY.1020.000318
ORF1ab/nsp12607S607TaGtaCt1111All0.000002
ORF1ab/nsp12607S607IaGtaTt1111AY.420.000443
ORF1ab/nsp12607S607SagTagC1111AY.960.022822
ORF1ab/nsp12607S607delAGT---1111B.1.1.70.00001
ORF1ab/nsp12607S607SagTagC1010AY.1030.000062
ORF1ab/nsp12607S607IaGtaTt1010B.1.10.000181
ORF1ab/nsp12607S607IaGtaTt1010B.1.2430.000696
ORF1ab/nsp12607S607IaGtaTt99AY.270.000582
ORF1ab/nsp12607S607IaGtaTt99B.1.1.2910.006682
ORF1ab/nsp12607S607IaGtaTt99B.1.5260.000212
ORF1ab/nsp12607S607IaGtaTt88AD.20.001752
ORF1ab/nsp12607S607IaGtaTt88B.1.1770.000105
ORF1ab/nsp12607S607IaGtaTt88B.1.2580.000532
ORF1ab/nsp12607S607RagTagA77AY.260.000198
ORF1ab/nsp12607S607NaGtaAt77B.1.20.000062
ORF1ab/nsp12607S607del1Agt-gt26All0
ORF1ab/nsp12607S607del1aGta-t26All0
ORF1ab/nsp12607S607del1agTag-26All0
ORF1ab/nsp12607S607IaGtaTt66AY.160.002278
ORF1ab/nsp12607S607SagTagC66AY.250.000036
ORF1ab/nsp12607S607NaGtaAt66AY.430.000027
ORF1ab/nsp12607S607IaGtaTt55AU.10.006329
ORF1ab/nsp12607S607IaGtaTt55AY.1030.000031
ORF1ab/nsp12607S607IaGtaTt55AY.390.000124
ORF1ab/nsp12607S607IaGtaTt55AY.980.000395
ORF1ab/nsp12607S607RagTagA45B.10.000037
ORF1ab/nsp12607S607RagTagG15B.10.000009
ORF1ab/nsp12607S607IaGtaTt55B.1.1.1350.023474
ORF1ab/nsp12607S607NaGtaAt55B.1.1.70.000004
ORF1ab/nsp12607S607NaGtaAt55B.1.6280.001762
ORF1ab/nsp12607S607IaGtaTt55D.20.000375
ORF1ab/nsp12607S607DAGtGAt44All0.000001
ORF1ab/nsp12607S607NaGtaAt44AY.1030.000025
ORF1ab/nsp12607S607SagTagC44AY.240.001724
ORF1ab/nsp12607S607NaGtaAt44AY.390.000099
ORF1ab/nsp12607S607IaGtaTt44AY.9.20.000147
ORF1ab/nsp12607S607SagTagC44B.10.000037
ORF1ab/nsp12607S607RagTagA34B.1.10.000054
ORF1ab/nsp12607S607RAgtCgt14B.1.10.000018
ORF1ab/nsp12607S607SagTagC44B.1.1.70.000004
ORF1ab/nsp12607S607CAgtTgt44B.1.1.70.000004
ORF1ab/nsp12607S607RAgtCgt44P.1.20.004624
ORF1ab/nsp12607S607IaGtaTt44P.1.20.004624
ORF1ab/nsp12607S607SagTagC33AY.10.001187
ORF1ab/nsp12607S607NaGtaAt33AY.1170.000254
ORF1ab/nsp12607S607IaGtaTt33AY.1200.000112
ORF1ab/nsp12607S607IaGtaTt33AY.1210.000406
ORF1ab/nsp12607S607NaGtaAt33AY.200.000117
ORF1ab/nsp12607S607GAgtGgt33AY.4.20.000065
ORF1ab/nsp12607S607GAgtGgt33AY.430.000013
ORF1ab/nsp12607S607GAgtGgt33AY.440.000018
ORF1ab/nsp12607S607IaGtaTt33AY.610.000314
ORF1ab/nsp12607S607IaGtaTt33AY.890.014706
ORF1ab/nsp12607S607NaGtaAt33B.10.000027
ORF1ab/nsp12607S607NaGtaAt33B.1.160.310.024194
ORF1ab/nsp12607S607IaGtaTt33B.1.3020.04
ORF1ab/nsp12607S607SagTagC33B.1.4990.003151
ORF1ab/nsp12607S607IaGtaTt33P.10.000047
ORF1ab/nsp12607S607SagTagC33P.10.000047
ORF1ab/nsp12607S607NaGtaAt33P.1.140.000143
ORF1ab/nsp12607S607IaGtaTt33R.10.00027
ORF1ab/nsp12607S607NaGtaAt22AY.1020.000053
ORF1ab/nsp12607S607IaGtaTt22AY.1070.000932
ORF1ab/nsp12607S607IaGtaTt22AY.1140.000462
ORF1ab/nsp12607S607IaGtaTt22AY.1190.000071
ORF1ab/nsp12607S607IaGtaTt22AY.200.000078
ORF1ab/nsp12607S607CAgtTgt22AY.250.000012
ORF1ab/nsp12607S607NaGtaAt22AY.30.00002
ORF1ab/nsp12607S607RagTagA22AY.390.000049
ORF1ab/nsp12607S607RagTagA22AY.40.000003
ORF1ab/nsp12607S607SagTagC22AY.460.000208
ORF1ab/nsp12607S607NaGtaAt22AY.50.000041
ORF1ab/nsp12607S607TaGtaCt22AY.50.000041
ORF1ab/nsp12607S607IaGtaTt22AY.50.000041
ORF1ab/nsp12607S607IaGtaTt22AY.540.000191
ORF1ab/nsp12607S607IaGtaTt22AY.550.001835
ORF1ab/nsp12607S607IaGtaTt22AY.90.000135
ORF1ab/nsp12607S607IaGtaTt22AY.910.001461
ORF1ab/nsp12607S607IaGtaTt22B.1.1.250.001137
ORF1ab/nsp12607S607IaGtaTt22B.1.1.3510.005587
ORF1ab/nsp12607S607SagTagC22B.1.1.4480.004065
ORF1ab/nsp12607S607TaGtaCt22B.1.1.70.000002
ORF1ab/nsp12607S607NaGtaAt22B.1.1470.001512
ORF1ab/nsp12607S607SagTagC22B.1.1770.000026
ORF1ab/nsp12607S607NaGtaAt22B.1.2580.000133
ORF1ab/nsp12607S607IaGtaTt22B.1.258.170.000208
ORF1ab/nsp12607S607IaGtaTt22B.1.36.290.001035
ORF1ab/nsp12607S607IaGtaTt22B.1.4270.000101
ORF1ab/nsp12607S607NaGtaAt22B.1.4280.002041
ORF1ab/nsp12607S607CAgtTgt22B.1.4280.002041
ORF1ab/nsp12607S607SagTagC22B.1.4290.000047
ORF1ab/nsp12607S607IaGtaTt22B.1.4290.000047
ORF1ab/nsp12607S607GAgtGgt22B.1.4380.013072
ORF1ab/nsp12607S607NaGtaAt22C.370.000232
ORF1ab/nsp12607S607SagTagC22P.1.140.000096
ORF1ab/nsp12607S607RagTagG11A.20.000662
ORF1ab/nsp12607S607SagTagC11A.2.50.000499
ORF1ab/nsp12607S607delAGT---11AD.20.000219
ORF1ab/nsp12607S607IaGtaTt11AY.1000.000046
ORF1ab/nsp12607S607IaGtaTt11AY.1010.00049
ORF1ab/nsp12607S607TaGtaCt11AY.1030.000006
ORF1ab/nsp12607S607GAgtGgt11AY.1030.000006
ORF1ab/nsp12607S607SagTagC11AY.1080.001103
ORF1ab/nsp12607S607IaGtaTt11AY.1080.001103
ORF1ab/nsp12607S607IaGtaTt11AY.1110.000183
ORF1ab/nsp12607S607IaGtaTt11AY.1160.000287
ORF1ab/nsp12607S607IaGtaTt11AY.1170.000085
ORF1ab/nsp12607S607CAgtTgt11AY.1190.000035
ORF1ab/nsp12607S607SagTagC11AY.1200.000037
ORF1ab/nsp12607S607IaGtaTt11AY.130.000161
ORF1ab/nsp12607S607SagTagC11AY.200.000039
ORF1ab/nsp12607S607IaGtaTt11AY.230.00007
ORF1ab/nsp12607S607GAgtGgt11AY.230.00007
ORF1ab/nsp12607S607GAgtGgt11AY.290.000016
ORF1ab/nsp12607S607TaGtaCt11AY.30.00001
ORF1ab/nsp12607S607SagTagC11AY.3.10.000085
ORF1ab/nsp12607S607delAGT---11AY.340.000097
ORF1ab/nsp12607S607NaGtaAt11AY.340.000097
ORF1ab/nsp12607S607SagTagC11AY.390.000025
ORF1ab/nsp12607S607CAgTTgC11AY.390.000025
ORF1ab/nsp12607S607DAGtGAt11AY.40.000002
ORF1ab/nsp12607S607delAGT---11AY.40.000002
ORF1ab/nsp12607S607TaGtaCt11AY.4.10.000737
ORF1ab/nsp12607S607delAGT---11AY.4.50.000107
ORF1ab/nsp12607S607SagTagC11AY.430.000004
ORF1ab/nsp12607S607delAGT---11AY.430.000004
ORF1ab/nsp12607S607DAGtGAt11AY.440.000006
ORF1ab/nsp12607S607CAgtTgt11AY.440.000006
ORF1ab/nsp12607S607NaGtaAt11AY.450.000122
ORF1ab/nsp12607S607IaGtaTt11AY.460.000104
ORF1ab/nsp12607S607IaGtaTt11AY.46.60.000072
ORF1ab/nsp12607S607delAGT---11AY.520.000814
ORF1ab/nsp12607S607GAgtGgt11AY.60.000041
ORF1ab/nsp12607S607NaGtaAt11AY.620.000436
ORF1ab/nsp12607S607SagTagC11AY.620.000436
ORF1ab/nsp12607S607IaGtaTt11AY.620.000436
ORF1ab/nsp12607S607SagTagC11AY.680.000274
ORF1ab/nsp12607S607IaGtaTt11AY.680.000274
ORF1ab/nsp12607S607IaGtaTt11AY.710.000475
ORF1ab/nsp12607S607SagTagC11AY.730.000665
ORF1ab/nsp12607S607IaGtaTt11AY.730.000665
ORF1ab/nsp12607S607delAGT---11AY.75.10.00018
ORF1ab/nsp12607S607IaGtaTt11AY.9.10.000084
ORF1ab/nsp12607S607RagTagA11AY.9.20.000037
ORF1ab/nsp12607S607DAGtGAt11AY.910.00073
ORF1ab/nsp12607S607NaGtaAt11AY.920.000287
ORF1ab/nsp12607S607IaGtaTt11AY.98.10.000048
ORF1ab/nsp12607S607SagTagC11AY.98.10.000048
ORF1ab/nsp12607S607delAGT---11AY.99.10.001553
ORF1ab/nsp12607S607IaGtaTt11AY.99.20.000092
ORF1ab/nsp12607S607SagTagC11B0.000128
ORF1ab/nsp12607S607IaGtaTt11B0.000128
ORF1ab/nsp12607S607del1aGta-t11B.10.000009
ORF1ab/nsp12607S607TaGtaCt11B.10.000009
ORF1ab/nsp12607S607GAgtGgt11B.10.000009
ORF1ab/nsp12607S607del1Agt-gt11B.1.10.000018
ORF1ab/nsp12607S607TaGtaCt11B.1.10.000018
ORF1ab/nsp12607S607IaGtaTt11B.1.1.1530.001095
ORF1ab/nsp12607S607RAgtCgt11B.1.1.1690.018182
ORF1ab/nsp12607S607IaGtaTt11B.1.1.1760.000439
ORF1ab/nsp12607S607IaGtaTt11B.1.1.2220.000204
ORF1ab/nsp12607S607CAgtTgt11B.1.1.2770.000759
ORF1ab/nsp12607S607CAgtTgt11B.1.1.280.000311
ORF1ab/nsp12607S607GAgtGgt11B.1.1.330.000421
ORF1ab/nsp12607S607NaGtaAt11B.1.1.3980.003226
ORF1ab/nsp12607S607NaGtaAt11B.1.1.4320.001266
ORF1ab/nsp12607S607IaGtaTt11B.1.1.4420.018519
ORF1ab/nsp12607S607IaGtaTt11B.1.1.4860.001577
ORF1ab/nsp12607S607IaGtaTt11B.1.1.5190.00004
ORF1ab/nsp12607S607GAgtGgt11B.1.1.5210.005348
ORF1ab/nsp12607S607IaGtaTt11B.1.1.630.000386
ORF1ab/nsp12607S607del1agTag-11B.1.1.70.000001
ORF1ab/nsp12607S607DAGtGAt11B.1.1.70.000001
ORF1ab/nsp12607S607TaGtaCt11B.1.1.700.000341
ORF1ab/nsp12607S607delAGT---11B.1.1.700.000341
ORF1ab/nsp12607S607RagTagG11B.1.1180.006711
ORF1ab/nsp12607S607delAGT---11B.1.1400.018868
ORF1ab/nsp12607S607delAGT---11B.1.1600.000031
ORF1ab/nsp12607S607SagTagC11B.1.1600.000031
ORF1ab/nsp12607S607delAGT---11B.1.160.230.004831
ORF1ab/nsp12607S607IaGtaTt11B.1.160.280.002924
ORF1ab/nsp12607S607GAgtGgt11B.1.1770.000013
ORF1ab/nsp12607S607RagTagA11B.1.1770.000013
ORF1ab/nsp12607S607delAGT---11B.1.1770.000013
ORF1ab/nsp12607S607TaGtaCt11B.1.1770.000013
ORF1ab/nsp12607S607delAGT---11B.1.177.160.000664
ORF1ab/nsp12607S607delAGT---11B.1.177.50.001242
ORF1ab/nsp12607S607delAGT---11B.1.177.540.000606
ORF1ab/nsp12607S607IaGtaTt11B.1.177.560.000668
ORF1ab/nsp12607S607del1agTag-11B.1.177.90.001332
ORF1ab/nsp12607S607RagTagG11B.1.20.000009
ORF1ab/nsp12607S607GAgtGgt11B.1.20.000009
ORF1ab/nsp12607S607SagTagC11B.1.20.000009
ORF1ab/nsp12607S607del1Agt-gt11B.1.20.000009
ORF1ab/nsp12607S607IaGtaTt11B.1.2060.000816
ORF1ab/nsp12607S607IaGtaTt11B.1.2210.000071
ORF1ab/nsp12607S607IaGtaTt11B.1.2340.000132
ORF1ab/nsp12607S607SagTagC11B.1.258.180.1
ORF1ab/nsp12607S607IaGtaTt11B.1.258.70.001912
ORF1ab/nsp12607S607IaGtaTt11B.1.2790.000514
ORF1ab/nsp12607S607IaGtaTt11B.1.3510.00003
ORF1ab/nsp12607S607SagTagC11B.1.351.50.0006
ORF1ab/nsp12607S607IaGtaTt11B.1.36.10.00114
ORF1ab/nsp12607S607IaGtaTt11B.1.36.170.000494
ORF1ab/nsp12607S607IaGtaTt11B.1.36.220.001208
ORF1ab/nsp12607S607IaGtaTt11B.1.3800.006623
ORF1ab/nsp12607S607SagTagC11B.1.3960.000706
ORF1ab/nsp12607S607IaGtaTt11B.1.4040.001302
ORF1ab/nsp12607S607RagTagA11B.1.4170.028571
ORF1ab/nsp12607S607RagTagA11B.1.4290.000024
ORF1ab/nsp12607S607NaGtaAt11B.1.4290.000024
ORF1ab/nsp12607S607SagTagC11B.1.466.20.000391
ORF1ab/nsp12607S607IaGtaTt11B.1.4700.001404
ORF1ab/nsp12607S607RagTagA11B.1.5260.000024
ORF1ab/nsp12607S607RagTagA11B.1.5580.004566
ORF1ab/nsp12607S607IaGtaTt11B.1.5780.017857
ORF1ab/nsp12607S607NaGtaAt11B.1.5950.000261
ORF1ab/nsp12607S607IaGtaTt11B.1.5960.000087
ORF1ab/nsp12607S607del1aGta-t11B.1.617.10.000129
ORF1ab/nsp12607S607IaGtaTt11B.1.617.10.000129
ORF1ab/nsp12607S607RAgtCgt11B.1.617.20.000004
ORF1ab/nsp12607S607GAgtGgt11B.1.617.20.000004
ORF1ab/nsp12607S607delAGT---11B.1.617.20.000004
ORF1ab/nsp12607S607IaGtaTt11B.1.6210.000089
ORF1ab/nsp12607S607NaGtaAt11B.1.6210.000089
ORF1ab/nsp12607S607SagTagC11C.20.016129
ORF1ab/nsp12607S607IaGtaTt11C.360.000911
ORF1ab/nsp12607S607NaGtaAt11C.37.10.002618
ORF1ab/nsp12607S607IaGtaTt11N.60.007092
ORF1ab/nsp12607S607IaGtaTt11P.1.170.000162
ORF1ab/nsp12607S607IaGtaTt11Q.20.000613
ORF1ab/nsp12607S607CAgtTgt11U.30.003861