CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 599

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12599H599HH4991HsyncaCcaT3145931459115235-15237
ORF1ab/nsp12599H599YH4991YnonsynCacTac2522450.97222215235-15237
ORF1ab/nsp12599H599YH4991YnonsynCaCTaT25270.027777815235-15237
ORF1ab/nsp12599H599QH4991QnonsyncaCcaA1341260.94029815235-15237
ORF1ab/nsp12599H599QH4991QnonsyncaCcaG13480.059701515235-15237
ORF1ab/nsp12599H599NH4991NnonsynCacAac94850.90425515235-15237
ORF1ab/nsp12599H599NH4991NnonsynCaCAaT9490.095744715235-15237
ORF1ab/nsp12599H599KH4991KnonsynCaCAaA6262115235-15237
ORF1ab/nsp12599H599IH4991InonsynCACATA61310.50819715235-15237
ORF1ab/nsp12599H599IH4991InonsynCAcATc61240.39344315235-15237
ORF1ab/nsp12599H599IH4991InonsynCACATT6160.098360715235-15237
ORF1ab/nsp12599H599XH4991XnonsynCaCTaA3737115235-15237
ORF1ab/nsp12599H599LH4991LnonsynCACTTA36230.63888915235-15237
ORF1ab/nsp12599H599LH4991LnonsyncAccTc3670.19444415235-15237
ORF1ab/nsp12599H599LH4991LnonsyncACcTA3650.13888915235-15237
ORF1ab/nsp12599H599LH4991LnonsyncACcTT3610.027777815235-15237
ORF1ab/nsp12599H599delH4991deldelCAC---3333115235-15237
ORF1ab/nsp12599H599FH4991FnonsynCAcTTc22170.77272715235-15237
ORF1ab/nsp12599H599FH4991FnonsynCACTTT2250.22727315235-15237
ORF1ab/nsp12599H599SH4991SnonsynCAcTCc830.37515235-15237
ORF1ab/nsp12599H599SH4991SnonsynCACTCA830.37515235-15237
ORF1ab/nsp12599H599SH4991SnonsynCAcAGc820.2515235-15237
ORF1ab/nsp12599H599RH4991RnonsyncAccGc55115235-15237
ORF1ab/nsp12599H599DH4991DnonsynCacGac44115235-15237
ORF1ab/nsp12599H599TH4991TnonsynCAcACc420.515235-15237
ORF1ab/nsp12599H599TH4991TnonsynCACACA420.515235-15237
ORF1ab/nsp12599H599PH4991PnonsyncAccCc320.66666715235-15237
ORF1ab/nsp12599H599PH4991PnonsyncACcCA310.33333315235-15237
ORF1ab/nsp12599H599del2H4991del2delCAc--c22115235-15237
ORF1ab/nsp12599H599del1H4991del1delcAcc-c11115235-15237
ORF1ab/nsp12599H599GH4991GnonsynCAcGGc11115235-15237
ORF1ab/nsp12599H599VH4991VnonsynCAcGTc11115235-15237

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12599H599HcaCcaT3145931459All0.006017
ORF1ab/nsp12599H599HcaCcaT2095520955AY.420.843022
ORF1ab/nsp12599H599HcaCcaT33093309AY.40.00515
ORF1ab/nsp12599H599HcaCcaT12591259B.1.1.70.001127
ORF1ab/nsp12599H599HcaCcaT11511151B.1.20.010135
ORF1ab/nsp12599H599HcaCcaT610610AY.1030.003788
ORF1ab/nsp12599H599HcaCcaT540540B.1.617.20.002033
ORF1ab/nsp12599H599HcaCcaT328328B.1.1770.004319
ORF1ab/nsp12599H599YCacTac245252All0.000047
ORF1ab/nsp12599H599YCaCTaT7252All0.000001
ORF1ab/nsp12599H599HcaCcaT228228AY.430.00101
ORF1ab/nsp12599H599HcaCcaT203203B.1.1.1590.948598
ORF1ab/nsp12599H599HcaCcaT197197AY.440.001199
ORF1ab/nsp12599H599HcaCcaT166166B.1.6280.058492
ORF1ab/nsp12599H599HcaCcaT155155B.1.10.002812
ORF1ab/nsp12599H599QcaCcaA126134All0.000024
ORF1ab/nsp12599H599QcaCcaG8134All0.000002
ORF1ab/nsp12599H599HcaCcaT129129AY.790.156174
ORF1ab/nsp12599H599YCacTac126126B.1.5260.002962
ORF1ab/nsp12599H599HcaCcaT101101B.10.000925
ORF1ab/nsp12599H599HcaCcaT9898B.1.5260.002303
ORF1ab/nsp12599H599NCacAac8594All0.000016
ORF1ab/nsp12599H599NCaCAaT994All0.000002
ORF1ab/nsp12599H599HcaCcaT9292AY.250.000553
ORF1ab/nsp12599H599HcaCcaT8686B.1.5960.007494
ORF1ab/nsp12599H599QcaCcaA8383AY.40.000129
ORF1ab/nsp12599H599HcaCcaT8181AY.30.000806
ORF1ab/nsp12599H599YCacTac6368B.1.1.70.000056
ORF1ab/nsp12599H599YCaCTaT568B.1.1.70.000004
ORF1ab/nsp12599H599HcaCcaT6464AY.1200.002379
ORF1ab/nsp12599H599HcaCcaT6464P.10.001008
ORF1ab/nsp12599H599KCaCAaA6262All0.000012
ORF1ab/nsp12599H599ICACATA3161All0.000006
ORF1ab/nsp12599H599ICAcATc2461All0.000005
ORF1ab/nsp12599H599ICACATT661All0.000001
ORF1ab/nsp12599H599HcaCcaT6161AY.50.00126
ORF1ab/nsp12599H599KCaCAaA5656B.1.1.70.00005
ORF1ab/nsp12599H599HcaCcaT5353AY.390.00131
ORF1ab/nsp12599H599ICACATA2752B.1.1.70.000024
ORF1ab/nsp12599H599ICAcATc2152B.1.1.70.000019
ORF1ab/nsp12599H599ICACATT452B.1.1.70.000004
ORF1ab/nsp12599H599HcaCcaT5151AY.46.20.032402
ORF1ab/nsp12599H599NCacAac4349B.1.1.70.000038
ORF1ab/nsp12599H599NCaCAaT649B.1.1.70.000005
ORF1ab/nsp12599H599HcaCcaT4444B.1.2210.003125
ORF1ab/nsp12599H599HcaCcaT4343B.1.2580.002862
ORF1ab/nsp12599H599HcaCcaT3939B.1.1.5190.001549
ORF1ab/nsp12599H599XCaCTaA3737All0.000007
ORF1ab/nsp12599H599HcaCcaT3737B.1.1.2140.002052
ORF1ab/nsp12599H599LCACTTA2336All0.000004
ORF1ab/nsp12599H599LcAccTc736All0.000001
ORF1ab/nsp12599H599LcACcTA536All0.000001
ORF1ab/nsp12599H599LcACcTT136All0
ORF1ab/nsp12599H599XCaCTaA3434B.1.1.70.00003
ORF1ab/nsp12599H599delCAC---3333All0.000006
ORF1ab/nsp12599H599HcaCcaT3232AY.290.000505
ORF1ab/nsp12599H599HcaCcaT3232B.1.1.3740.07601
ORF1ab/nsp12599H599HcaCcaT3131AY.610.003248
ORF1ab/nsp12599H599LCACTTA2029B.1.1.70.000018
ORF1ab/nsp12599H599LcAccTc529B.1.1.70.000004
ORF1ab/nsp12599H599LcACcTA429B.1.1.70.000004
ORF1ab/nsp12599H599HcaCcaT2626AY.900.017796
ORF1ab/nsp12599H599HcaCcaT2626B.1.1.4320.032911
ORF1ab/nsp12599H599HcaCcaT2424AY.260.000679
ORF1ab/nsp12599H599HcaCcaT2323B.1.1600.000717
ORF1ab/nsp12599H599FCAcTTc1722All0.000003
ORF1ab/nsp12599H599FCACTTT522All0.000001
ORF1ab/nsp12599H599HcaCcaT2222AY.460.00229
ORF1ab/nsp12599H599HcaCcaT2222B.1.177.120.003337
ORF1ab/nsp12599H599HcaCcaT2121AY.1170.001775
ORF1ab/nsp12599H599HcaCcaT2121AY.4.20.000455
ORF1ab/nsp12599H599HcaCcaT2121B.1.1.2690.028417
ORF1ab/nsp12599H599HcaCcaT2121B.1.4290.000494
ORF1ab/nsp12599H599HcaCcaT2121B.1.5250.002376
ORF1ab/nsp12599H599HcaCcaT2020B.1.258.170.002079
ORF1ab/nsp12599H599HcaCcaT1919AY.46.60.001372
ORF1ab/nsp12599H599HcaCcaT1919B.1.6210.001682
ORF1ab/nsp12599H599HcaCcaT1919B.1.6370.001388
ORF1ab/nsp12599H599HcaCcaT1919P.1.10.006036
ORF1ab/nsp12599H599FCAcTTc1418B.1.1.70.000013
ORF1ab/nsp12599H599FCACTTT418B.1.1.70.000004
ORF1ab/nsp12599H599HcaCcaT1717AY.1000.000782
ORF1ab/nsp12599H599NCacAac1616AY.30.000159
ORF1ab/nsp12599H599HcaCcaT1616B.1.177.600.003495
ORF1ab/nsp12599H599HcaCcaT1616B.1.3510.000476
ORF1ab/nsp12599H599HcaCcaT1616B.1.4710.043716
ORF1ab/nsp12599H599HcaCcaT1616B.1.5750.004854
ORF1ab/nsp12599H599HcaCcaT1616P.20.002986
ORF1ab/nsp12599H599HcaCcaT1515AY.1210.00203
ORF1ab/nsp12599H599HcaCcaT1515AY.99.20.001382
ORF1ab/nsp12599H599HcaCcaT1414AY.3.10.001194
ORF1ab/nsp12599H599delCAC---1414B.1.1.70.000013
ORF1ab/nsp12599H599QcaCcaA1314B.1.1.70.000012
ORF1ab/nsp12599H599QcaCcaG114B.1.1.70.000001
ORF1ab/nsp12599H599HcaCcaT1313AY.116.10.004049
ORF1ab/nsp12599H599HcaCcaT1313B.1.177.40.002744
ORF1ab/nsp12599H599HcaCcaT1313B.1.5510.016774
ORF1ab/nsp12599H599QcaCcaA1212AY.260.00034
ORF1ab/nsp12599H599HcaCcaT1212AY.340.001164
ORF1ab/nsp12599H599HcaCcaT1212B.1.1.2160.010686
ORF1ab/nsp12599H599HcaCcaT1212B.1.1.4060.077922
ORF1ab/nsp12599H599HcaCcaT1111AY.230.000767
ORF1ab/nsp12599H599HcaCcaT1111AY.470.000342
ORF1ab/nsp12599H599HcaCcaT1111B.1.2400.002371
ORF1ab/nsp12599H599HcaCcaT1010AY.1020.000265
ORF1ab/nsp12599H599HcaCcaT1010AY.1060.003349
ORF1ab/nsp12599H599HcaCcaT1010B.1.3110.002746
ORF1ab/nsp12599H599HcaCcaT1010B.1.36.290.005173
ORF1ab/nsp12599H599HcaCcaT99AY.98.10.000436
ORF1ab/nsp12599H599HcaCcaT99B.1.1.280.002801
ORF1ab/nsp12599H599YCacTac99B.1.20.000079
ORF1ab/nsp12599H599HcaCcaT99C.370.001045
ORF1ab/nsp12599H599SCACTCA38All0.000001
ORF1ab/nsp12599H599SCAcTCc38All0.000001
ORF1ab/nsp12599H599SCAcAGc28All0
ORF1ab/nsp12599H599HcaCcaT88AY.330.000534
ORF1ab/nsp12599H599HcaCcaT88AY.750.000448
ORF1ab/nsp12599H599HcaCcaT88AY.980.000632
ORF1ab/nsp12599H599HcaCcaT88B.1.1.3060.003507
ORF1ab/nsp12599H599HcaCcaT88B.1.1.3370.028777
ORF1ab/nsp12599H599HcaCcaT88B.1.177.860.001468
ORF1ab/nsp12599H599HcaCcaT88B.1.214.30.057143
ORF1ab/nsp12599H599HcaCcaT88B.1.36.380.013136
ORF1ab/nsp12599H599HcaCcaT88Q.10.001011
ORF1ab/nsp12599H599HcaCcaT88Q.40.003638
ORF1ab/nsp12599H599HcaCcaT88Q.80.001319
ORF1ab/nsp12599H599HcaCcaT77AY.1180.000439
ORF1ab/nsp12599H599HcaCcaT77AY.450.000852
ORF1ab/nsp12599H599HcaCcaT77AY.550.006422
ORF1ab/nsp12599H599HcaCcaT77AY.9.20.000257
ORF1ab/nsp12599H599SCAcTCc37B.1.1.70.000003
ORF1ab/nsp12599H599SCACTCA37B.1.1.70.000003
ORF1ab/nsp12599H599SCAcAGc17B.1.1.70.000001
ORF1ab/nsp12599H599HcaCcaT77B.1.3490.005004
ORF1ab/nsp12599H599HcaCcaT77P.1.140.000335
ORF1ab/nsp12599H599HcaCcaT77Q.30.001015
ORF1ab/nsp12599H599HcaCcaT66AY.1190.000212
ORF1ab/nsp12599H599HcaCcaT66AY.120.2.10.00299
ORF1ab/nsp12599H599HcaCcaT66AY.200.000233
ORF1ab/nsp12599H599HcaCcaT66AY.300.002374
ORF1ab/nsp12599H599HcaCcaT66B.1.1.390.003058
ORF1ab/nsp12599H599HcaCcaT66B.1.177.320.008097
ORF1ab/nsp12599H599HcaCcaT66B.1.360.000875
ORF1ab/nsp12599H599HcaCcaT66B.1.36.80.006
ORF1ab/nsp12599H599HcaCcaT66B.1.4160.007614
ORF1ab/nsp12599H599HcaCcaT66B.1.4270.000303
ORF1ab/nsp12599H599HcaCcaT66B.1.930.005602
ORF1ab/nsp12599H599RcAccGc55All0.000001
ORF1ab/nsp12599H599HcaCcaT55AY.1130.000712
ORF1ab/nsp12599H599HcaCcaT55AY.380.002496
ORF1ab/nsp12599H599HcaCcaT55AY.39.10.000198
ORF1ab/nsp12599H599HcaCcaT55AY.46.40.000823
ORF1ab/nsp12599H599HcaCcaT55AY.870.004163
ORF1ab/nsp12599H599HcaCcaT55B0.000639
ORF1ab/nsp12599H599HcaCcaT55B.1.1.500.003394
ORF1ab/nsp12599H599HcaCcaT55B.1.160.80.006443
ORF1ab/nsp12599H599YCacTac55B.1.2210.000355
ORF1ab/nsp12599H599HcaCcaT55B.1.2430.000348
ORF1ab/nsp12599H599HcaCcaT55B.1.3690.001426
ORF1ab/nsp12599H599HcaCcaT55P.1.150.001162
ORF1ab/nsp12599H599HcaCcaT55P.1.170.000809
ORF1ab/nsp12599H599HcaCcaT55R.10.00045
ORF1ab/nsp12599H599HcaCcaT44A.2.5.20.006289
ORF1ab/nsp12599H599DCacGac44All0.000001
ORF1ab/nsp12599H599TCAcACc24All0
ORF1ab/nsp12599H599TCACACA24All0
ORF1ab/nsp12599H599HcaCcaT44AY.120.20.005141
ORF1ab/nsp12599H599HcaCcaT44AY.23.10.001669
ORF1ab/nsp12599H599YCacTac44AY.250.000024
ORF1ab/nsp12599H599YCacTac44AY.40.000006
ORF1ab/nsp12599H599NCacAac44AY.430.000018
ORF1ab/nsp12599H599HcaCcaT44AY.7.10.000451
ORF1ab/nsp12599H599HcaCcaT44AY.99.10.006211
ORF1ab/nsp12599H599NCacAac44B.10.000037
ORF1ab/nsp12599H599HcaCcaT44B.1.1.2070.004728
ORF1ab/nsp12599H599HcaCcaT44B.1.1.3390.042105
ORF1ab/nsp12599H599HcaCcaT44B.1.1.370.000771
ORF1ab/nsp12599H599TCAcACc24B.1.1.70.000002
ORF1ab/nsp12599H599TCACACA24B.1.1.70.000002
ORF1ab/nsp12599H599YCacTac44B.1.3510.000119
ORF1ab/nsp12599H599HcaCcaT44B.1.575.10.009756
ORF1ab/nsp12599H599HcaCcaT44B.1.5950.001044
ORF1ab/nsp12599H599HcaCcaT44B.1.617.10.000516
ORF1ab/nsp12599H599QcaCcaA44B.1.6280.001409
ORF1ab/nsp12599H599HcaCcaT33A.23.10.002113
ORF1ab/nsp12599H599PcAccCc23All0
ORF1ab/nsp12599H599PcACcCA13All0
ORF1ab/nsp12599H599YCacTac33AY.1030.000019
ORF1ab/nsp12599H599HcaCcaT33AY.1110.000549
ORF1ab/nsp12599H599HcaCcaT33AY.16.10.00141
ORF1ab/nsp12599H599NCacAac33AY.200.000117
ORF1ab/nsp12599H599NCacAac33AY.250.000018
ORF1ab/nsp12599H599HcaCcaT33AY.34.10.00153
ORF1ab/nsp12599H599YCacTac33AY.4.20.000065
ORF1ab/nsp12599H599HcaCcaT33AY.4.50.000322
ORF1ab/nsp12599H599QcaCcaA33AY.430.000013
ORF1ab/nsp12599H599HcaCcaT33AY.570.001969
ORF1ab/nsp12599H599HcaCcaT33AY.60.000123
ORF1ab/nsp12599H599HcaCcaT33AY.9.10.000251
ORF1ab/nsp12599H599HcaCcaT33AY.920.000862
ORF1ab/nsp12599H599YCacTac33B.10.000027
ORF1ab/nsp12599H599HcaCcaT33B.1.1.1890.004539
ORF1ab/nsp12599H599HcaCcaT33B.1.1.2430.012245
ORF1ab/nsp12599H599HcaCcaT33B.1.1.250.001706
ORF1ab/nsp12599H599HcaCcaT33B.1.1.3330.003229
ORF1ab/nsp12599H599HcaCcaT33B.1.1.4870.01676
ORF1ab/nsp12599H599HcaCcaT33B.1.177.210.000229
ORF1ab/nsp12599H599HcaCcaT33B.1.2340.000396
ORF1ab/nsp12599H599HcaCcaT33B.1.2500.043478
ORF1ab/nsp12599H599HcaCcaT33B.1.3970.014563
ORF1ab/nsp12599H599HcaCcaT33B.1.4000.001287
ORF1ab/nsp12599H599NCacAac33B.1.5960.000261
ORF1ab/nsp12599H599HcaCcaT33B.1.6090.001438
ORF1ab/nsp12599H599HcaCcaT33C.360.002732
ORF1ab/nsp12599H599HcaCcaT33D.20.000225
ORF1ab/nsp12599H599ICACATA13P.10.000016
ORF1ab/nsp12599H599ICACATT13P.10.000016
ORF1ab/nsp12599H599ICAcATc13P.10.000016
ORF1ab/nsp12599H599del2CAc--c22All0
ORF1ab/nsp12599H599HcaCcaT22AU.30.004219
ORF1ab/nsp12599H599HcaCcaT22AY.10.000791
ORF1ab/nsp12599H599HcaCcaT22AY.1100.000225
ORF1ab/nsp12599H599HcaCcaT22AY.240.000862
ORF1ab/nsp12599H599ICAcATc12AY.250.000006
ORF1ab/nsp12599H599ICACATA12AY.250.000006
ORF1ab/nsp12599H599HcaCcaT22AY.320.001065
ORF1ab/nsp12599H599HcaCcaT22AY.4.2.10.000298
ORF1ab/nsp12599H599HcaCcaT22AY.530.000575
ORF1ab/nsp12599H599HcaCcaT22AY.540.000191
ORF1ab/nsp12599H599HcaCcaT22AY.580.001815
ORF1ab/nsp12599H599HcaCcaT22AY.590.001059
ORF1ab/nsp12599H599HcaCcaT22AY.700.000417
ORF1ab/nsp12599H599HcaCcaT22AY.710.00095
ORF1ab/nsp12599H599HcaCcaT22AY.730.001331
ORF1ab/nsp12599H599HcaCcaT22AY.90.000135
ORF1ab/nsp12599H599HcaCcaT22AY.910.001461
ORF1ab/nsp12599H599QcaCcaA22B.10.000018
ORF1ab/nsp12599H599KCaCAaA22B.10.000018
ORF1ab/nsp12599H599YCacTac22B.1.10.000036
ORF1ab/nsp12599H599LcAccTc12B.1.10.000018
ORF1ab/nsp12599H599ICAcATc12B.1.10.000018
ORF1ab/nsp12599H599LCACTTA12B.1.10.000018
ORF1ab/nsp12599H599ICACATA12B.1.10.000018
ORF1ab/nsp12599H599HcaCcaT22B.1.1.2200.003717
ORF1ab/nsp12599H599HcaCcaT22B.1.1.2630.003115
ORF1ab/nsp12599H599HcaCcaT22B.1.1.2840.000215
ORF1ab/nsp12599H599HcaCcaT22B.1.1.2910.001485
ORF1ab/nsp12599H599HcaCcaT22B.1.1.3110.000716
ORF1ab/nsp12599H599HcaCcaT22B.1.1.3120.003824
ORF1ab/nsp12599H599HcaCcaT22B.1.1.3170.000823
ORF1ab/nsp12599H599HcaCcaT22B.1.1.3770.002762
ORF1ab/nsp12599H599HcaCcaT22B.1.1.3890.012121
ORF1ab/nsp12599H599HcaCcaT22B.1.1.4480.004065
ORF1ab/nsp12599H599HcaCcaT22B.1.1.460.008734
ORF1ab/nsp12599H599PcACcCA12B.1.1.70.000001
ORF1ab/nsp12599H599PcAccCc12B.1.1.70.000001
ORF1ab/nsp12599H599delCAC---22B.1.1770.000026
ORF1ab/nsp12599H599NCaCAaT12B.1.20.000009
ORF1ab/nsp12599H599NCacAac12B.1.20.000009
ORF1ab/nsp12599H599QcaCcaG22B.1.258.170.000208
ORF1ab/nsp12599H599YCacTac22B.1.258.170.000208
ORF1ab/nsp12599H599HcaCcaT22B.1.3290.001215
ORF1ab/nsp12599H599HcaCcaT22B.1.36.70.008
ORF1ab/nsp12599H599HcaCcaT22B.1.4330.00639
ORF1ab/nsp12599H599HcaCcaT22B.1.5650.001621
ORF1ab/nsp12599H599QcaCcaA22B.1.5750.000607
ORF1ab/nsp12599H599ICACATT12B.1.5760.000907
ORF1ab/nsp12599H599LcACcTA12B.1.5760.000907
ORF1ab/nsp12599H599LcACcTT12B.1.5760.000907
ORF1ab/nsp12599H599ICACATA12B.1.5760.000907
ORF1ab/nsp12599H599YCacTac22B.1.6090.000959
ORF1ab/nsp12599H599QcaCcaA22B.1.617.20.000008
ORF1ab/nsp12599H599HcaCcaT22C.36.10.008299
ORF1ab/nsp12599H599NCaCAaT12P.10.000016
ORF1ab/nsp12599H599FCACTTT12P.10.000016
ORF1ab/nsp12599H599YCaCTaT12P.10.000016
ORF1ab/nsp12599H599YCacTac12P.10.000016
ORF1ab/nsp12599H599NCacAac12P.10.000016
ORF1ab/nsp12599H599FCAcTTc12P.10.000016
ORF1ab/nsp12599H599HcaCcaT22P.1.160.000748
ORF1ab/nsp12599H599HcaCcaT22P.1.70.000639
ORF1ab/nsp12599H599HcaCcaT11A0.000387
ORF1ab/nsp12599H599HcaCcaT11A.10.000282
ORF1ab/nsp12599H599HcaCcaT11A.210.00277
ORF1ab/nsp12599H599HcaCcaT11A.30.002096
ORF1ab/nsp12599H599delCAC---11AD.20.000219
ORF1ab/nsp12599H599HcaCcaT11AD.20.000219
ORF1ab/nsp12599H599YCacTac11AE.40.043478
ORF1ab/nsp12599H599HcaCcaT11AL.10.012987
ORF1ab/nsp12599H599del1cAcc-c11All0
ORF1ab/nsp12599H599VCAcGTc11All0
ORF1ab/nsp12599H599GCAcGGc11All0
ORF1ab/nsp12599H599HcaCcaT11AY.1010.00049
ORF1ab/nsp12599H599YCacTac11AY.1020.000027
ORF1ab/nsp12599H599QcaCcaA11AY.1030.000006
ORF1ab/nsp12599H599HcaCcaT11AY.1050.000643
ORF1ab/nsp12599H599HcaCcaT11AY.1080.001103
ORF1ab/nsp12599H599YCacTac11AY.1130.000142
ORF1ab/nsp12599H599YCacTac11AY.1170.000085
ORF1ab/nsp12599H599del1cAcc-c11AY.120.10.000321
ORF1ab/nsp12599H599HcaCcaT11AY.120.10.000321
ORF1ab/nsp12599H599HcaCcaT11AY.150.002222
ORF1ab/nsp12599H599HcaCcaT11AY.160.00038
ORF1ab/nsp12599H599NCacAac11AY.230.00007
ORF1ab/nsp12599H599LCACTTA11AY.250.000006
ORF1ab/nsp12599H599XCaCTaA11AY.250.000006
ORF1ab/nsp12599H599FCAcTTc11AY.250.000006
ORF1ab/nsp12599H599KCaCAaA11AY.250.000006
ORF1ab/nsp12599H599YCacTac11AY.260.000028
ORF1ab/nsp12599H599HcaCcaT11AY.270.000065
ORF1ab/nsp12599H599HcaCcaT11AY.280.00189
ORF1ab/nsp12599H599HcaCcaT11AY.29.10.000221
ORF1ab/nsp12599H599HcaCcaT11AY.350.000233
ORF1ab/nsp12599H599delCAC---11AY.40.000002
ORF1ab/nsp12599H599HcaCcaT11AY.4.10.000737
ORF1ab/nsp12599H599delCAC---11AY.4.50.000107
ORF1ab/nsp12599H599HcaCcaT11AY.410.000294
ORF1ab/nsp12599H599YCaCTaT11AY.420.00004
ORF1ab/nsp12599H599delCAC---11AY.430.000004
ORF1ab/nsp12599H599DCacGac11AY.430.000004
ORF1ab/nsp12599H599YCacTac11AY.440.000006
ORF1ab/nsp12599H599del2CAc--c11AY.460.000104
ORF1ab/nsp12599H599HcaCcaT11AY.46.10.001027
ORF1ab/nsp12599H599HcaCcaT11AY.46.50.000198
ORF1ab/nsp12599H599HcaCcaT11AY.480.000465
ORF1ab/nsp12599H599HcaCcaT11AY.5.30.000337
ORF1ab/nsp12599H599HcaCcaT11AY.5.40.000277
ORF1ab/nsp12599H599HcaCcaT11AY.520.000814
ORF1ab/nsp12599H599delCAC---11AY.520.000814
ORF1ab/nsp12599H599RcAccGc11AY.620.000436
ORF1ab/nsp12599H599HcaCcaT11AY.630.000387
ORF1ab/nsp12599H599HcaCcaT11AY.680.000274
ORF1ab/nsp12599H599HcaCcaT11AY.70.000196
ORF1ab/nsp12599H599HcaCcaT11AY.7.20.000559
ORF1ab/nsp12599H599HcaCcaT11AY.740.000116
ORF1ab/nsp12599H599HcaCcaT11AY.75.10.00018
ORF1ab/nsp12599H599delCAC---11AY.75.10.00018
ORF1ab/nsp12599H599HcaCcaT11AY.80.000606
ORF1ab/nsp12599H599YCacTac11AY.840.000437
ORF1ab/nsp12599H599HcaCcaT11AY.880.000884
ORF1ab/nsp12599H599QcaCcaA11AY.9.20.000037
ORF1ab/nsp12599H599NCacAac11AY.9.20.000037
ORF1ab/nsp12599H599HcaCcaT11AY.930.000273
ORF1ab/nsp12599H599HcaCcaT11AY.940.000443
ORF1ab/nsp12599H599HcaCcaT11AY.950.000761
ORF1ab/nsp12599H599HcaCcaT11AY.990.001049
ORF1ab/nsp12599H599delCAC---11AY.99.10.001553
ORF1ab/nsp12599H599YCacTac11B0.000128
ORF1ab/nsp12599H599DCacGac11B.10.000009
ORF1ab/nsp12599H599GCAcGGc11B.10.000009
ORF1ab/nsp12599H599KCaCAaA11B.1.10.000018
ORF1ab/nsp12599H599XCaCTaA11B.1.10.000018
ORF1ab/nsp12599H599FCAcTTc11B.1.10.000018
ORF1ab/nsp12599H599NCacAac11B.1.10.000018
ORF1ab/nsp12599H599QcaCcaG11B.1.10.000018
ORF1ab/nsp12599H599HcaCcaT11B.1.1.10.000327
ORF1ab/nsp12599H599HcaCcaT11B.1.1.100.001115
ORF1ab/nsp12599H599RcAccGc11B.1.1.1480.008772
ORF1ab/nsp12599H599HcaCcaT11B.1.1.1610.003534
ORF1ab/nsp12599H599HcaCcaT11B.1.1.1920.002309
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2220.000204
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2260.005814
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2310.003096
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2650.003155
ORF1ab/nsp12599H599QcaCcaG11B.1.1.280.000311
ORF1ab/nsp12599H599DCacGac11B.1.1.2840.000107
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2890.002083
ORF1ab/nsp12599H599HcaCcaT11B.1.1.2940.001266
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3010.001179
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3180.000302
ORF1ab/nsp12599H599NCacAac11B.1.1.3180.000302
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3260.001761
ORF1ab/nsp12599H599HcaCcaT11B.1.1.330.000421
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3470.018182
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3680.003086
ORF1ab/nsp12599H599HcaCcaT11B.1.1.3700.012658
ORF1ab/nsp12599H599SCAcAGc11B.1.1.4090.002833
ORF1ab/nsp12599H599HcaCcaT11B.1.1.4160.000905
ORF1ab/nsp12599H599HcaCcaT11B.1.1.4200.001006
ORF1ab/nsp12599H599HcaCcaT11B.1.1.4340.000349
ORF1ab/nsp12599H599HcaCcaT11B.1.1.4490.022727
ORF1ab/nsp12599H599delCAC---11B.1.1.5190.00004
ORF1ab/nsp12599H599HcaCcaT11B.1.1.520.012195
ORF1ab/nsp12599H599HcaCcaT11B.1.1.5210.005348
ORF1ab/nsp12599H599VCAcGTc11B.1.1.70.000001
ORF1ab/nsp12599H599del2CAc--c11B.1.1.70.000001
ORF1ab/nsp12599H599DCacGac11B.1.1.70.000001
ORF1ab/nsp12599H599delCAC---11B.1.1.700.000341
ORF1ab/nsp12599H599HcaCcaT11B.1.110.30.000718
ORF1ab/nsp12599H599RcAccGc11B.1.110.30.000718
ORF1ab/nsp12599H599delCAC---11B.1.1400.018868
ORF1ab/nsp12599H599delCAC---11B.1.1600.000031
ORF1ab/nsp12599H599HcaCcaT11B.1.160.160.000929
ORF1ab/nsp12599H599delCAC---11B.1.160.230.004831
ORF1ab/nsp12599H599QcaCcaG11B.1.160.230.004831
ORF1ab/nsp12599H599YCacTac11B.1.1770.000013
ORF1ab/nsp12599H599QcaCcaA11B.1.1770.000013
ORF1ab/nsp12599H599HcaCcaT11B.1.177.110.001698
ORF1ab/nsp12599H599HcaCcaT11B.1.177.160.000664
ORF1ab/nsp12599H599delCAC---11B.1.177.160.000664
ORF1ab/nsp12599H599HcaCcaT11B.1.177.350.000691
ORF1ab/nsp12599H599NCacAac11B.1.177.40.000211
ORF1ab/nsp12599H599HcaCcaT11B.1.177.500.004695
ORF1ab/nsp12599H599HcaCcaT11B.1.177.520.001757
ORF1ab/nsp12599H599delCAC---11B.1.177.540.000606
ORF1ab/nsp12599H599HcaCcaT11B.1.177.540.000606
ORF1ab/nsp12599H599HcaCcaT11B.1.177.70.000165
ORF1ab/nsp12599H599HcaCcaT11B.1.177.730.000566
ORF1ab/nsp12599H599HcaCcaT11B.1.177.800.001912
ORF1ab/nsp12599H599QcaCcaG11B.1.177.810.000189
ORF1ab/nsp12599H599HcaCcaT11B.1.177.810.000189
ORF1ab/nsp12599H599delCAC---11B.1.177.810.000189
ORF1ab/nsp12599H599HcaCcaT11B.1.177.830.001481
ORF1ab/nsp12599H599HcaCcaT11B.1.177.850.005435
ORF1ab/nsp12599H599QcaCcaA11B.1.20.000009
ORF1ab/nsp12599H599HcaCcaT11B.1.2060.000816
ORF1ab/nsp12599H599HcaCcaT11B.1.2130.014925
ORF1ab/nsp12599H599RcAccGc11B.1.2320.000537
ORF1ab/nsp12599H599HcaCcaT11B.1.2360.002053
ORF1ab/nsp12599H599HcaCcaT11B.1.2410.000812
ORF1ab/nsp12599H599RcAccGc11B.1.2430.00007
ORF1ab/nsp12599H599HcaCcaT11B.1.258.40.003448
ORF1ab/nsp12599H599HcaCcaT11B.1.2600.003344
ORF1ab/nsp12599H599HcaCcaT11B.1.2650.001271
ORF1ab/nsp12599H599HcaCcaT11B.1.2790.000514
ORF1ab/nsp12599H599HcaCcaT11B.1.2980.002114
ORF1ab/nsp12599H599PcAccCc11B.1.3050.002151
ORF1ab/nsp12599H599HcaCcaT11B.1.3460.001311
ORF1ab/nsp12599H599HcaCcaT11B.1.36.160.001425
ORF1ab/nsp12599H599HcaCcaT11B.1.36.170.000494
ORF1ab/nsp12599H599HcaCcaT11B.1.3600.012658
ORF1ab/nsp12599H599HcaCcaT11B.1.3620.001541
ORF1ab/nsp12599H599HcaCcaT11B.1.3750.00082
ORF1ab/nsp12599H599HcaCcaT11B.1.3810.007812
ORF1ab/nsp12599H599HcaCcaT11B.1.3890.001002
ORF1ab/nsp12599H599YCacTac11B.1.3960.000706
ORF1ab/nsp12599H599HcaCcaT11B.1.4040.001302
ORF1ab/nsp12599H599HcaCcaT11B.1.4250.002994
ORF1ab/nsp12599H599YCacTac11B.1.4290.000024
ORF1ab/nsp12599H599HcaCcaT11B.1.466.20.000391
ORF1ab/nsp12599H599HcaCcaT11B.1.4680.005714
ORF1ab/nsp12599H599HcaCcaT11B.1.4700.001404
ORF1ab/nsp12599H599HcaCcaT11B.1.4990.00105
ORF1ab/nsp12599H599HcaCcaT11B.1.5200.021739
ORF1ab/nsp12599H599HcaCcaT11B.1.5610.000397
ORF1ab/nsp12599H599HcaCcaT11B.1.5640.000426
ORF1ab/nsp12599H599HcaCcaT11B.1.5740.002151
ORF1ab/nsp12599H599QcaCcaA11B.1.5760.000907
ORF1ab/nsp12599H599NCaCAaT11B.1.5760.000907
ORF1ab/nsp12599H599KCaCAaA11B.1.5760.000907
ORF1ab/nsp12599H599HcaCcaT11B.1.5760.000907
ORF1ab/nsp12599H599HcaCcaT11B.1.5820.000491
ORF1ab/nsp12599H599HcaCcaT11B.1.5880.00091
ORF1ab/nsp12599H599QcaCcaG11B.1.5950.000261
ORF1ab/nsp12599H599HcaCcaT11B.1.6100.003546
ORF1ab/nsp12599H599YCacTac11B.1.617.20.000004
ORF1ab/nsp12599H599delCAC---11B.1.617.20.000004
ORF1ab/nsp12599H599HcaCcaT11B.1.6270.00202
ORF1ab/nsp12599H599HcaCcaT11B.1.90.006173
ORF1ab/nsp12599H599HcaCcaT11B.400.000364
ORF1ab/nsp12599H599HcaCcaT11B.6.60.000889
ORF1ab/nsp12599H599HcaCcaT11C.10.002392
ORF1ab/nsp12599H599HcaCcaT11C.160.00106
ORF1ab/nsp12599H599NCacAac11C.360.000911
ORF1ab/nsp12599H599HcaCcaT11C.400.027778
ORF1ab/nsp12599H599YCacTac11D.20.000075
ORF1ab/nsp12599H599HcaCcaT11N.50.001767
ORF1ab/nsp12599H599KCaCAaA11P.10.000016
ORF1ab/nsp12599H599LCACTTA11P.10.000016
ORF1ab/nsp12599H599XCaCTaA11P.10.000016
ORF1ab/nsp12599H599HcaCcaT11P.1.120.000484
ORF1ab/nsp12599H599LcAccTc11P.1.120.000484
ORF1ab/nsp12599H599NCacAac11P.1.150.000232
ORF1ab/nsp12599H599HcaCcaT11P.30.001595
ORF1ab/nsp12599H599HcaCcaT11P.70.004367
ORF1ab/nsp12599H599HcaCcaT11Q.20.000613
ORF1ab/nsp12599H599YCacTac11Q.30.000145
ORF1ab/nsp12599H599delCAC---11U.30.003861