CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 594

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12594F594FF4986FsynttCttT26822682115220-15222
ORF1ab/nsp12594F594CF4986CnonsyntTctGc200200115220-15222
ORF1ab/nsp12594F594LF4986LnonsynTtcCtc61360.59016415220-15222
ORF1ab/nsp12594F594LF4986LnonsynttCttA61220.36065615220-15222
ORF1ab/nsp12594F594LF4986LnonsynttCttG6130.049180315220-15222
ORF1ab/nsp12594F594delF4986deldelTTC---4343115220-15222
ORF1ab/nsp12594F594SF4986SnonsyntTctCc66115220-15222
ORF1ab/nsp12594F594VF4986VnonsynTtcGtc44115220-15222
ORF1ab/nsp12594F594del1F4986del1delttCtt-420.515220-15222
ORF1ab/nsp12594F594del1F4986del1delTtc-tc420.515220-15222
ORF1ab/nsp12594F594del2F4986del2delTTc--c320.66666715220-15222
ORF1ab/nsp12594F594del2F4986del2deltTCt--310.33333315220-15222
ORF1ab/nsp12594F594YF4986YnonsyntTctAc22115220-15222
ORF1ab/nsp12594F594IF4986InonsynTtcAtc11115220-15222

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12594F594FttCttT26822682All0.000513
ORF1ab/nsp12594F594FttCttT486486B.1.1.70.000435
ORF1ab/nsp12594F594FttCttT336336AY.40.000523
ORF1ab/nsp12594F594CtTctGc200200All0.000038
ORF1ab/nsp12594F594CtTctGc192192B.1.1.70.000172
ORF1ab/nsp12594F594FttCttT170170B.1.617.20.00064
ORF1ab/nsp12594F594FttCttT163163AY.250.00098
ORF1ab/nsp12594F594FttCttT148148B.1.20.001303
ORF1ab/nsp12594F594FttCttT130130B.1.1.2280.396341
ORF1ab/nsp12594F594FttCttT115115AY.1020.003049
ORF1ab/nsp12594F594FttCttT8989N.50.157244
ORF1ab/nsp12594F594FttCttT6767P.10.001056
ORF1ab/nsp12594F594LTtcCtc3661All0.000007
ORF1ab/nsp12594F594LttCttA2261All0.000004
ORF1ab/nsp12594F594LttCttG361All0.000001
ORF1ab/nsp12594F594FttCttT6060B.1.1.2240.857143
ORF1ab/nsp12594F594FttCttT5656AY.260.001585
ORF1ab/nsp12594F594FttCttT5353AY.50.001094
ORF1ab/nsp12594F594FttCttT4444AY.460.00458
ORF1ab/nsp12594F594delTTC---4343All0.000008
ORF1ab/nsp12594F594FttCttT4040AY.440.000243
ORF1ab/nsp12594F594FttCttT3838AY.470.001182
ORF1ab/nsp12594F594FttCttT3636AY.1100.004057
ORF1ab/nsp12594F594FttCttT3636AY.430.000159
ORF1ab/nsp12594F594FttCttT3030AY.1030.000186
ORF1ab/nsp12594F594FttCttT2424B.1.3510.000713
ORF1ab/nsp12594F594FttCttT2323B.1.10.000417
ORF1ab/nsp12594F594delTTC---2323B.1.1.70.000021
ORF1ab/nsp12594F594FttCttT1818AY.30.000179
ORF1ab/nsp12594F594FttCttT1818B.10.000165
ORF1ab/nsp12594F594FttCttT1818B.1.177.830.026667
ORF1ab/nsp12594F594FttCttT1818P.1.140.00086
ORF1ab/nsp12594F594FttCttT1717AY.540.001621
ORF1ab/nsp12594F594FttCttT1616AY.390.000395
ORF1ab/nsp12594F594FttCttT1616B.1.5260.000376
ORF1ab/nsp12594F594FttCttT1515B.1.2430.001044
ORF1ab/nsp12594F594FttCttT1515B.1.3810.117188
ORF1ab/nsp12594F594FttCttT1515B.1.4290.000353
ORF1ab/nsp12594F594FttCttT1313B.1.1.4340.004531
ORF1ab/nsp12594F594LttCttA812AY.40.000012
ORF1ab/nsp12594F594LTtcCtc312AY.40.000005
ORF1ab/nsp12594F594LttCttG112AY.40.000002
ORF1ab/nsp12594F594FttCttT1212AY.690.00224
ORF1ab/nsp12594F594FttCttT1111AY.1190.000388
ORF1ab/nsp12594F594FttCttT1111B.1.1.5190.000437
ORF1ab/nsp12594F594FttCttT1111B.1.4270.000555
ORF1ab/nsp12594F594FttCttT1010B.1.6370.000731
ORF1ab/nsp12594F594FttCttT99AY.98.10.000436
ORF1ab/nsp12594F594FttCttT99B.1.1.3060.003946
ORF1ab/nsp12594F594FttCttT99B.350.070312
ORF1ab/nsp12594F594FttCttT88AY.330.000534
ORF1ab/nsp12594F594FttCttT88B.1.1600.00025
ORF1ab/nsp12594F594FttCttT88P.1.120.003872
ORF1ab/nsp12594F594FttCttT77AY.290.00011
ORF1ab/nsp12594F594FttCttT77B.1.1.330.002946
ORF1ab/nsp12594F594StTctCc66All0.000001
ORF1ab/nsp12594F594FttCttT66B.1.1.2220.001224
ORF1ab/nsp12594F594FttCttT66B.1.1.3170.00247
ORF1ab/nsp12594F594LTtcCtc66B.1.1.70.000005
ORF1ab/nsp12594F594FttCttT66B.1.1770.000079
ORF1ab/nsp12594F594FttCttT55A.2.50.002495
ORF1ab/nsp12594F594FttCttT55AY.1170.000423
ORF1ab/nsp12594F594FttCttT55AY.4.20.000108
ORF1ab/nsp12594F594FttCttT55AY.400.004822
ORF1ab/nsp12594F594FttCttT55AY.980.000395
ORF1ab/nsp12594F594LttCttA45B.10.000037
ORF1ab/nsp12594F594LTtcCtc15B.10.000009
ORF1ab/nsp12594F594FttCttT55B.1.5820.002453
ORF1ab/nsp12594F594VTtcGtc44All0.000001
ORF1ab/nsp12594F594del1Ttc-tc24All0
ORF1ab/nsp12594F594del1ttCtt-24All0
ORF1ab/nsp12594F594FttCttT44AY.1210.000541
ORF1ab/nsp12594F594FttCttT44B.1.1.2140.000222
ORF1ab/nsp12594F594FttCttT44B.1.1.3480.003185
ORF1ab/nsp12594F594FttCttT44B.1.617.10.000516
ORF1ab/nsp12594F594del2TTc--c23All0
ORF1ab/nsp12594F594del2tTCt--13All0
ORF1ab/nsp12594F594FttCttT33AY.1060.001005
ORF1ab/nsp12594F594FttCttT33AY.1130.000427
ORF1ab/nsp12594F594FttCttT33AY.130.000483
ORF1ab/nsp12594F594LTtcCtc33AY.290.000047
ORF1ab/nsp12594F594FttCttT33AY.340.000291
ORF1ab/nsp12594F594FttCttT33AY.360.000445
ORF1ab/nsp12594F594delTTC---33AY.40.000005
ORF1ab/nsp12594F594FttCttT33AY.4.40.001227
ORF1ab/nsp12594F594FttCttT33AY.420.000121
ORF1ab/nsp12594F594LTtcCtc23AY.440.000012
ORF1ab/nsp12594F594LttCttA13AY.440.000006
ORF1ab/nsp12594F594FttCttT33AY.830.005172
ORF1ab/nsp12594F594FttCttT33AY.920.000862
ORF1ab/nsp12594F594FttCttT33B.1.1.280.000934
ORF1ab/nsp12594F594FttCttT33B.1.1.3110.001074
ORF1ab/nsp12594F594del1Ttc-tc23B.1.1.70.000002
ORF1ab/nsp12594F594del1ttCtt-13B.1.1.70.000001
ORF1ab/nsp12594F594delTTC---33B.1.1770.00004
ORF1ab/nsp12594F594FttCttT33B.1.177.770.002179
ORF1ab/nsp12594F594FttCttT33B.1.2580.0002
ORF1ab/nsp12594F594FttCttT33B.1.5950.000783
ORF1ab/nsp12594F594FttCttT33B.1.5960.000261
ORF1ab/nsp12594F594FttCttT33B.1.6010.090909
ORF1ab/nsp12594F594FttCttT33B.1.6090.001438
ORF1ab/nsp12594F594LTtcCtc33B.1.617.20.000011
ORF1ab/nsp12594F594FttCttT33B.1.6210.000266
ORF1ab/nsp12594F594FttCttT33Q.30.000435
ORF1ab/nsp12594F594YtTctAc22All0
ORF1ab/nsp12594F594FttCttT22AY.100.00106
ORF1ab/nsp12594F594LttCttG12AY.1030.000006
ORF1ab/nsp12594F594LTtcCtc12AY.1030.000006
ORF1ab/nsp12594F594FttCttT22AY.1160.000574
ORF1ab/nsp12594F594FttCttT22AY.1200.000074
ORF1ab/nsp12594F594FttCttT22AY.140.000176
ORF1ab/nsp12594F594FttCttT22AY.200.000078
ORF1ab/nsp12594F594FttCttT22AY.230.000139
ORF1ab/nsp12594F594FttCttT22AY.300.000791
ORF1ab/nsp12594F594delTTC---22AY.4.50.000215
ORF1ab/nsp12594F594FttCttT22AY.450.000243
ORF1ab/nsp12594F594FttCttT22AY.46.20.001271
ORF1ab/nsp12594F594FttCttT22AY.640.00119
ORF1ab/nsp12594F594FttCttT22AY.7.10.000225
ORF1ab/nsp12594F594FttCttT22AY.740.000231
ORF1ab/nsp12594F594FttCttT22AY.750.000112
ORF1ab/nsp12594F594FttCttT22AY.90.000135
ORF1ab/nsp12594F594CtTctGc22B.10.000018
ORF1ab/nsp12594F594FttCttT22B.1.1.1570.001826
ORF1ab/nsp12594F594FttCttT22B.1.1.1890.003026
ORF1ab/nsp12594F594FttCttT22B.1.1.2690.002706
ORF1ab/nsp12594F594FttCttT22B.1.1.3180.000604
ORF1ab/nsp12594F594FttCttT22B.1.1.5260.007092
ORF1ab/nsp12594F594del2TTc--c22B.1.1.70.000002
ORF1ab/nsp12594F594FttCttT22B.1.177.150.001262
ORF1ab/nsp12594F594FttCttT22B.1.177.210.000153
ORF1ab/nsp12594F594StTctCc22B.1.20.000018
ORF1ab/nsp12594F594FttCttT22B.1.2210.000142
ORF1ab/nsp12594F594FttCttT22B.1.2340.000264
ORF1ab/nsp12594F594FttCttT22B.1.2400.000431
ORF1ab/nsp12594F594FttCttT22B.1.2410.001623
ORF1ab/nsp12594F594FttCttT22B.1.258.170.000208
ORF1ab/nsp12594F594FttCttT22B.1.3060.011429
ORF1ab/nsp12594F594FttCttT22B.1.360.000292
ORF1ab/nsp12594F594FttCttT22B.1.3690.00057
ORF1ab/nsp12594F594FttCttT22B.1.3890.002004
ORF1ab/nsp12594F594FttCttT22C.10.004785
ORF1ab/nsp12594F594FttCttT22P.1.170.000324
ORF1ab/nsp12594F594ITtcAtc11A.2.40.003367
ORF1ab/nsp12594F594FttCttT11A.2.5.10.004808
ORF1ab/nsp12594F594FttCttT11AD.10.004115
ORF1ab/nsp12594F594delTTC---11AD.20.000219
ORF1ab/nsp12594F594ITtcAtc11All0
ORF1ab/nsp12594F594FttCttT11AM.40.003571
ORF1ab/nsp12594F594FttCttT11AY.10.000396
ORF1ab/nsp12594F594FttCttT11AY.1000.000046
ORF1ab/nsp12594F594FttCttT11AY.1180.000063
ORF1ab/nsp12594F594FttCttT11AY.120.10.000321
ORF1ab/nsp12594F594del2tTCt--11AY.190.00114
ORF1ab/nsp12594F594LttCttA11AY.200.000039
ORF1ab/nsp12594F594LttCttA11AY.240.000431
ORF1ab/nsp12594F594LTtcCtc11AY.260.000028
ORF1ab/nsp12594F594FttCttT11AY.270.000065
ORF1ab/nsp12594F594CtTctGc11AY.290.000016
ORF1ab/nsp12594F594LTtcCtc11AY.30.00001
ORF1ab/nsp12594F594delTTC---11AY.330.000067
ORF1ab/nsp12594F594FttCttT11AY.34.10.00051
ORF1ab/nsp12594F594FttCttT11AY.380.000499
ORF1ab/nsp12594F594LttCttG11AY.390.000025
ORF1ab/nsp12594F594VTtcGtc11AY.39.10.00004
ORF1ab/nsp12594F594CtTctGc11AY.40.000002
ORF1ab/nsp12594F594VTtcGtc11AY.4.20.000022
ORF1ab/nsp12594F594FttCttT11AY.4.50.000107
ORF1ab/nsp12594F594VTtcGtc11AY.430.000004
ORF1ab/nsp12594F594LttCttA11AY.430.000004
ORF1ab/nsp12594F594delTTC---11AY.430.000004
ORF1ab/nsp12594F594del1ttCtt-11AY.440.000006
ORF1ab/nsp12594F594FttCttT11AY.46.10.001027
ORF1ab/nsp12594F594LTtcCtc11AY.46.60.000072
ORF1ab/nsp12594F594LTtcCtc11AY.50.000021
ORF1ab/nsp12594F594FttCttT11AY.5.40.000277
ORF1ab/nsp12594F594FttCttT11AY.510.000909
ORF1ab/nsp12594F594LttCttA11AY.520.000814
ORF1ab/nsp12594F594delTTC---11AY.520.000814
ORF1ab/nsp12594F594FttCttT11AY.530.000288
ORF1ab/nsp12594F594FttCttT11AY.60.000041
ORF1ab/nsp12594F594LTtcCtc11AY.610.000105
ORF1ab/nsp12594F594FttCttT11AY.610.000105
ORF1ab/nsp12594F594FttCttT11AY.70.000196
ORF1ab/nsp12594F594FttCttT11AY.710.000475
ORF1ab/nsp12594F594LTtcCtc11AY.750.000056
ORF1ab/nsp12594F594FttCttT11AY.840.000437
ORF1ab/nsp12594F594LTtcCtc11AY.920.000287
ORF1ab/nsp12594F594delTTC---11AY.99.10.001553
ORF1ab/nsp12594F594FttCttT11AZ.10.000867
ORF1ab/nsp12594F594LttCttA11B0.000128
ORF1ab/nsp12594F594FttCttT11B0.000128
ORF1ab/nsp12594F594YtTctAc11B.10.000009
ORF1ab/nsp12594F594StTctCc11B.10.000009
ORF1ab/nsp12594F594FttCttT11B.1.1.1100.090909
ORF1ab/nsp12594F594FttCttT11B.1.1.1170.009709
ORF1ab/nsp12594F594FttCttT11B.1.1.2050.003717
ORF1ab/nsp12594F594CtTctGc11B.1.1.2070.001182
ORF1ab/nsp12594F594FttCttT11B.1.1.2310.003096
ORF1ab/nsp12594F594FttCttT11B.1.1.2840.000107
ORF1ab/nsp12594F594FttCttT11B.1.1.3490.010309
ORF1ab/nsp12594F594FttCttT11B.1.1.3860.066667
ORF1ab/nsp12594F594FttCttT11B.1.1.4090.002833
ORF1ab/nsp12594F594LTtcCtc11B.1.1.4340.000349
ORF1ab/nsp12594F594YtTctAc11B.1.1.5190.00004
ORF1ab/nsp12594F594VTtcGtc11B.1.1.70.000001
ORF1ab/nsp12594F594delTTC---11B.1.1.700.000341
ORF1ab/nsp12594F594FttCttT11B.1.130.002375
ORF1ab/nsp12594F594delTTC---11B.1.1600.000031
ORF1ab/nsp12594F594delTTC---11B.1.160.230.004831
ORF1ab/nsp12594F594LTtcCtc11B.1.177.100.000878
ORF1ab/nsp12594F594delTTC---11B.1.177.160.000664
ORF1ab/nsp12594F594FttCttT11B.1.177.230.003236
ORF1ab/nsp12594F594FttCttT11B.1.177.50.001242
ORF1ab/nsp12594F594delTTC---11B.1.177.540.000606
ORF1ab/nsp12594F594FttCttT11B.1.177.600.000218
ORF1ab/nsp12594F594FttCttT11B.1.177.730.000566
ORF1ab/nsp12594F594LttCttA11B.1.177.790.002342
ORF1ab/nsp12594F594delTTC---11B.1.177.810.000189
ORF1ab/nsp12594F594FttCttT11B.1.177.860.000183
ORF1ab/nsp12594F594FttCttT11B.1.2980.002114
ORF1ab/nsp12594F594FttCttT11B.1.3130.006579
ORF1ab/nsp12594F594LTtcCtc11B.1.3380.008621
ORF1ab/nsp12594F594StTctCc11B.1.3510.00003
ORF1ab/nsp12594F594LTtcCtc11B.1.360.000146
ORF1ab/nsp12594F594FttCttT11B.1.3980.002976
ORF1ab/nsp12594F594FttCttT11B.1.4110.003704
ORF1ab/nsp12594F594FttCttT11B.1.4160.001269
ORF1ab/nsp12594F594LTtcCtc11B.1.4220.000812
ORF1ab/nsp12594F594LTtcCtc11B.1.4270.00005
ORF1ab/nsp12594F594LTtcCtc11B.1.4290.000024
ORF1ab/nsp12594F594FttCttT11B.1.4590.004082
ORF1ab/nsp12594F594FttCttT11B.1.4620.007246
ORF1ab/nsp12594F594FttCttT11B.1.466.20.000391
ORF1ab/nsp12594F594LTtcCtc11B.1.466.20.000391
ORF1ab/nsp12594F594LttCttA11B.1.5260.000024
ORF1ab/nsp12594F594LTtcCtc11B.1.5330.009615
ORF1ab/nsp12594F594CtTctGc11B.1.5760.000907
ORF1ab/nsp12594F594LttCttA11B.1.5960.000087
ORF1ab/nsp12594F594FttCttT11B.1.596.10.009346
ORF1ab/nsp12594F594StTctCc11B.1.617.20.000004
ORF1ab/nsp12594F594LttCttA11B.1.6230.000536
ORF1ab/nsp12594F594FttCttT11B.1.9.50.005682
ORF1ab/nsp12594F594FttCttT11C.110.010638
ORF1ab/nsp12594F594FttCttT11C.360.000911
ORF1ab/nsp12594F594FttCttT11C.370.000116
ORF1ab/nsp12594F594FttCttT11D.20.000075
ORF1ab/nsp12594F594LTtcCtc11D.20.000075
ORF1ab/nsp12594F594StTctCc11D.20.000075
ORF1ab/nsp12594F594FttCttT11P.1.160.000374
ORF1ab/nsp12594F594FttCttT11P.1.20.001156
ORF1ab/nsp12594F594FttCttT11P.20.000187
ORF1ab/nsp12594F594CtTctGc11Q.10.000126
ORF1ab/nsp12594F594CtTctGc11Q.80.000165
ORF1ab/nsp12594F594FttCttT11Q.80.000165
ORF1ab/nsp12594F594delTTC---11U.30.003861