CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 592 & Codon = agT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12592S592SS4984SsynagCagT21562156115214-15216

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12592S592SagCagT21562156All0.000412
ORF1ab/nsp12592S592SagCagT699699B.1.1.70.000626
ORF1ab/nsp12592S592SagCagT254254B.1.617.20.000956
ORF1ab/nsp12592S592SagCagT199199AY.40.00031
ORF1ab/nsp12592S592SagCagT9191AY.430.000403
ORF1ab/nsp12592S592SagCagT7979AY.1030.000491
ORF1ab/nsp12592S592SagCagT7575AY.1000.00345
ORF1ab/nsp12592S592SagCagT7575B.1.10.001361
ORF1ab/nsp12592S592SagCagT5454B.1.20.000475
ORF1ab/nsp12592S592SagCagT4141U.30.158301
ORF1ab/nsp12592S592SagCagT3636AY.250.000217
ORF1ab/nsp12592S592SagCagT3434B.10.000311
ORF1ab/nsp12592S592SagCagT3333AY.30.000328
ORF1ab/nsp12592S592SagCagT3232N.40.13617
ORF1ab/nsp12592S592SagCagT1717P.10.000268
ORF1ab/nsp12592S592SagCagT1515AY.440.000091
ORF1ab/nsp12592S592SagCagT1414AY.1020.000371
ORF1ab/nsp12592S592SagCagT1313C.370.001509
ORF1ab/nsp12592S592SagCagT1212AL.10.155844
ORF1ab/nsp12592S592SagCagT1212AY.410.003527
ORF1ab/nsp12592S592SagCagT1111B.1.1770.000145
ORF1ab/nsp12592S592SagCagT99AY.99.20.000829
ORF1ab/nsp12592S592SagCagT99B.1.466.20.003521
ORF1ab/nsp12592S592SagCagT99B.1.5640.003833
ORF1ab/nsp12592S592SagCagT99B.1.5750.002731
ORF1ab/nsp12592S592SagCagT99P.1.150.002091
ORF1ab/nsp12592S592SagCagT88AY.870.006661
ORF1ab/nsp12592S592SagCagT88B.1.110.10.8
ORF1ab/nsp12592S592SagCagT88B.1.3510.000238
ORF1ab/nsp12592S592SagCagT77AY.1190.000247
ORF1ab/nsp12592S592SagCagT77AY.200.000272
ORF1ab/nsp12592S592SagCagT77AY.260.000198
ORF1ab/nsp12592S592SagCagT77AY.290.00011
ORF1ab/nsp12592S592SagCagT77AY.340.000679
ORF1ab/nsp12592S592SagCagT77AY.39.10.000277
ORF1ab/nsp12592S592SagCagT77P.1.140.000335
ORF1ab/nsp12592S592SagCagT66AY.1130.000854
ORF1ab/nsp12592S592SagCagT66AY.230.000418
ORF1ab/nsp12592S592SagCagT66AY.470.000187
ORF1ab/nsp12592S592SagCagT66AY.50.000124
ORF1ab/nsp12592S592SagCagT66B.1.5960.000523
ORF1ab/nsp12592S592SagCagT66Q.80.000989
ORF1ab/nsp12592S592SagCagT55B.1.1600.000156
ORF1ab/nsp12592S592SagCagT55B.1.220.006588
ORF1ab/nsp12592S592SagCagT55B.1.4290.000118
ORF1ab/nsp12592S592SagCagT44AY.3.10.000341
ORF1ab/nsp12592S592SagCagT44AY.390.000099
ORF1ab/nsp12592S592SagCagT44AY.450.000487
ORF1ab/nsp12592S592SagCagT44AY.60.000165
ORF1ab/nsp12592S592SagCagT44AY.70.000784
ORF1ab/nsp12592S592SagCagT44AY.740.000463
ORF1ab/nsp12592S592SagCagT44AY.980.000316
ORF1ab/nsp12592S592SagCagT44B.1.1.4860.006309
ORF1ab/nsp12592S592SagCagT44B.1.177.570.001124
ORF1ab/nsp12592S592SagCagT44B.1.2210.000284
ORF1ab/nsp12592S592SagCagT44B.1.2400.000862
ORF1ab/nsp12592S592SagCagT44D.20.0003
ORF1ab/nsp12592S592SagCagT33AY.10.001187
ORF1ab/nsp12592S592SagCagT33AY.1170.000254
ORF1ab/nsp12592S592SagCagT33AY.190.003421
ORF1ab/nsp12592S592SagCagT33AY.4.20.000065
ORF1ab/nsp12592S592SagCagT33AY.810.005976
ORF1ab/nsp12592S592SagCagT33B.1.1.2190.015
ORF1ab/nsp12592S592SagCagT33B.1.1.480.008621
ORF1ab/nsp12592S592SagCagT33B.1.2580.0002
ORF1ab/nsp12592S592SagCagT33B.1.36.290.001552
ORF1ab/nsp12592S592SagCagT33B.1.4430.014019
ORF1ab/nsp12592S592SagCagT33B.1.6210.000266
ORF1ab/nsp12592S592SagCagT22AY.1110.000366
ORF1ab/nsp12592S592SagCagT22AY.120.000632
ORF1ab/nsp12592S592SagCagT22AY.1210.000271
ORF1ab/nsp12592S592SagCagT22AY.16.10.00094
ORF1ab/nsp12592S592SagCagT22AY.300.000791
ORF1ab/nsp12592S592SagCagT22AY.330.000134
ORF1ab/nsp12592S592SagCagT22AY.4.50.000215
ORF1ab/nsp12592S592SagCagT22AY.90.000135
ORF1ab/nsp12592S592SagCagT22AY.9.20.000073
ORF1ab/nsp12592S592SagCagT22B.1.1.10.000653
ORF1ab/nsp12592S592SagCagT22B.1.1.2030.033898
ORF1ab/nsp12592S592SagCagT22B.1.1.2160.001781
ORF1ab/nsp12592S592SagCagT22B.1.1.4130.013793
ORF1ab/nsp12592S592SagCagT22B.1.177.540.001213
ORF1ab/nsp12592S592SagCagT22B.1.5060.047619
ORF1ab/nsp12592S592SagCagT22B.1.5950.000522
ORF1ab/nsp12592S592SagCagT22B.60.00182
ORF1ab/nsp12592S592SagCagT22C.1.20.008511
ORF1ab/nsp12592S592SagCagT22Q.30.00029
ORF1ab/nsp12592S592SagCagT11A0.000387
ORF1ab/nsp12592S592SagCagT11A.10.000282
ORF1ab/nsp12592S592SagCagT11A.2.50.000499
ORF1ab/nsp12592S592SagCagT11A.23.10.000704
ORF1ab/nsp12592S592SagCagT11A.50.001923
ORF1ab/nsp12592S592SagCagT11AD.10.004115
ORF1ab/nsp12592S592SagCagT11AY.1010.00049
ORF1ab/nsp12592S592SagCagT11AY.1060.000335
ORF1ab/nsp12592S592SagCagT11AY.1070.000466
ORF1ab/nsp12592S592SagCagT11AY.1180.000063
ORF1ab/nsp12592S592SagCagT11AY.1200.000037
ORF1ab/nsp12592S592SagCagT11AY.140.000088
ORF1ab/nsp12592S592SagCagT11AY.160.00038
ORF1ab/nsp12592S592SagCagT11AY.240.000431
ORF1ab/nsp12592S592SagCagT11AY.360.000148
ORF1ab/nsp12592S592SagCagT11AY.4.30.000842
ORF1ab/nsp12592S592SagCagT11AY.420.00004
ORF1ab/nsp12592S592SagCagT11AY.460.000104
ORF1ab/nsp12592S592SagCagT11AY.46.40.000165
ORF1ab/nsp12592S592SagCagT11AY.510.000909
ORF1ab/nsp12592S592SagCagT11AY.540.000095
ORF1ab/nsp12592S592SagCagT11AY.550.000917
ORF1ab/nsp12592S592SagCagT11AY.620.000436
ORF1ab/nsp12592S592SagCagT11AY.700.000209
ORF1ab/nsp12592S592SagCagT11AY.750.000056
ORF1ab/nsp12592S592SagCagT11AY.75.10.00018
ORF1ab/nsp12592S592SagCagT11AY.9.10.000084
ORF1ab/nsp12592S592SagCagT11AY.910.00073
ORF1ab/nsp12592S592SagCagT11AY.950.000761
ORF1ab/nsp12592S592SagCagT11B.1.1.100.001115
ORF1ab/nsp12592S592SagCagT11B.1.1.1010.01
ORF1ab/nsp12592S592SagCagT11B.1.1.1610.003534
ORF1ab/nsp12592S592SagCagT11B.1.1.1640.005155
ORF1ab/nsp12592S592SagCagT11B.1.1.2140.000055
ORF1ab/nsp12592S592SagCagT11B.1.1.2220.000204
ORF1ab/nsp12592S592SagCagT11B.1.1.2730.006757
ORF1ab/nsp12592S592SagCagT11B.1.1.2940.001266
ORF1ab/nsp12592S592SagCagT11B.1.1.3060.000438
ORF1ab/nsp12592S592SagCagT11B.1.1.330.000421
ORF1ab/nsp12592S592SagCagT11B.1.1.3480.000796
ORF1ab/nsp12592S592SagCagT11B.1.1.390.00051
ORF1ab/nsp12592S592SagCagT11B.1.1.4090.002833
ORF1ab/nsp12592S592SagCagT11B.1.1.460.004367
ORF1ab/nsp12592S592SagCagT11B.1.1.5190.00004
ORF1ab/nsp12592S592SagCagT11B.1.1.5230.001563
ORF1ab/nsp12592S592SagCagT11B.1.1.700.000341
ORF1ab/nsp12592S592SagCagT11B.1.160.280.002924
ORF1ab/nsp12592S592SagCagT11B.1.177.150.000631
ORF1ab/nsp12592S592SagCagT11B.1.177.320.00135
ORF1ab/nsp12592S592SagCagT11B.1.177.350.000691
ORF1ab/nsp12592S592SagCagT11B.1.214.20.0006
ORF1ab/nsp12592S592SagCagT11B.1.221.10.002907
ORF1ab/nsp12592S592SagCagT11B.1.2290.009709
ORF1ab/nsp12592S592SagCagT11B.1.2320.000537
ORF1ab/nsp12592S592SagCagT11B.1.2340.000132
ORF1ab/nsp12592S592SagCagT11B.1.258.170.000104
ORF1ab/nsp12592S592SagCagT11B.1.36.10.00114
ORF1ab/nsp12592S592SagCagT11B.1.36.310.001751
ORF1ab/nsp12592S592SagCagT11B.1.36.80.001
ORF1ab/nsp12592S592SagCagT11B.1.3750.00082
ORF1ab/nsp12592S592SagCagT11B.1.4270.00005
ORF1ab/nsp12592S592SagCagT11B.1.4700.001404
ORF1ab/nsp12592S592SagCagT11B.1.5260.000024
ORF1ab/nsp12592S592SagCagT11B.1.5770.000687
ORF1ab/nsp12592S592SagCagT11B.1.5980.016949
ORF1ab/nsp12592S592SagCagT11B.1.6370.000073
ORF1ab/nsp12592S592SagCagT11B.410.008
ORF1ab/nsp12592S592SagCagT11B.610.005747
ORF1ab/nsp12592S592SagCagT11C.160.00106
ORF1ab/nsp12592S592SagCagT11C.36.30.000567
ORF1ab/nsp12592S592SagCagT11P.1.120.000484
ORF1ab/nsp12592S592SagCagT11P.1.70.000319