CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 585

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12585A585VA4977VnonsyngCtgTt23922392115193-15195
ORF1ab/nsp12585A585SA4977SnonsynGctTct509509115193-15195
ORF1ab/nsp12585A585AA4977AsyngcTgcC4794370.91231715193-15195
ORF1ab/nsp12585A585AA4977AsyngcTgcA479390.081419615193-15195
ORF1ab/nsp12585A585AA4977AsyngcTgcG47930.0062630515193-15195
ORF1ab/nsp12585A585TA4977TnonsynGctAct311311115193-15195
ORF1ab/nsp12585A585delA4977deldelGCT---4444115193-15195
ORF1ab/nsp12585A585DA4977DnonsyngCtgAt3333115193-15195
ORF1ab/nsp12585A585GA4977GnonsyngCtgGt33115193-15195
ORF1ab/nsp12585A585PA4977PnonsynGctCct22115193-15195
ORF1ab/nsp12585A585FA4977FnonsynGCtTTt22115193-15195
ORF1ab/nsp12585A585del2A4977del2delgCTg--11115193-15195
ORF1ab/nsp12585A585del1A4977del1delgcTgc-11115193-15195

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12585A585VgCtgTt23922392All0.000457
ORF1ab/nsp12585A585VgCtgTt15651565AY.3.10.13343
ORF1ab/nsp12585A585SGctTct509509All0.000097
ORF1ab/nsp12585A585AgcTgcC437479All0.000084
ORF1ab/nsp12585A585AgcTgcA39479All0.000007
ORF1ab/nsp12585A585AgcTgcG3479All0.000001
ORF1ab/nsp12585A585TGctAct311311All0.000059
ORF1ab/nsp12585A585VgCtgTt192192B.1.1.70.000172
ORF1ab/nsp12585A585TGctAct185185B.1.1.70.000166
ORF1ab/nsp12585A585AgcTgcC146155B.1.617.20.00055
ORF1ab/nsp12585A585AgcTgcA9155B.1.617.20.000034
ORF1ab/nsp12585A585VgCtgTt9292B.1.2430.006402
ORF1ab/nsp12585A585VgCtgTt7777AY.40.00012
ORF1ab/nsp12585A585SGctTct7575Q.10.009474
ORF1ab/nsp12585A585SGctTct7171B.1.1.70.000064
ORF1ab/nsp12585A585VgCtgTt6868AY.250.000409
ORF1ab/nsp12585A585SGctTct6868AY.40.000106
ORF1ab/nsp12585A585AgcTgcC5152B.1.1770.000672
ORF1ab/nsp12585A585AgcTgcG152B.1.1770.000013
ORF1ab/nsp12585A585SGctTct4646B.1.4600.821429
ORF1ab/nsp12585A585delGCT---4444All0.000008
ORF1ab/nsp12585A585SGctTct4444AY.440.000268
ORF1ab/nsp12585A585AgcTgcC3838B.1.20.000335
ORF1ab/nsp12585A585TGctAct3636AY.250.000217
ORF1ab/nsp12585A585VgCtgTt3535B.1.617.20.000132
ORF1ab/nsp12585A585DgCtgAt3333All0.000006
ORF1ab/nsp12585A585SGctTct3333AY.70.006468
ORF1ab/nsp12585A585VgCtgTt3030A.280.079365
ORF1ab/nsp12585A585VgCtgTt3030B.1.10.000544
ORF1ab/nsp12585A585delGCT---2929B.1.1.70.000026
ORF1ab/nsp12585A585AgcTgcC2727AY.30.000269
ORF1ab/nsp12585A585AgcTgcA2525B.1.1.5190.000993
ORF1ab/nsp12585A585VgCtgTt2323AY.30.000229
ORF1ab/nsp12585A585VgCtgTt2222B.10.000202
ORF1ab/nsp12585A585VgCtgTt2222B.1.1770.00029
ORF1ab/nsp12585A585DgCtgAt2222C.390.415094
ORF1ab/nsp12585A585VgCtgTt2121AY.1030.00013
ORF1ab/nsp12585A585AgcTgcC1921B.1.1.70.000017
ORF1ab/nsp12585A585AgcTgcA221B.1.1.70.000002
ORF1ab/nsp12585A585SGctTct2121B.1.617.20.000079
ORF1ab/nsp12585A585VgCtgTt2020B.1.20.000176
ORF1ab/nsp12585A585SGctTct2020P.10.000315
ORF1ab/nsp12585A585AgcTgcC1919AY.360.002816
ORF1ab/nsp12585A585VgCtgTt1818AY.430.00008
ORF1ab/nsp12585A585TGctAct1616AY.1010.007847
ORF1ab/nsp12585A585AgcTgcC1313AY.1210.001759
ORF1ab/nsp12585A585AgcTgcC1313AY.40.00002
ORF1ab/nsp12585A585VgCtgTt1313AY.440.000079
ORF1ab/nsp12585A585SGctTct1212AY.250.000072
ORF1ab/nsp12585A585AgcTgcC1111AY.290.000174
ORF1ab/nsp12585A585SGctTct1010AY.1020.000265
ORF1ab/nsp12585A585SGctTct1010AY.290.000158
ORF1ab/nsp12585A585TGctAct1010B.1.4290.000235
ORF1ab/nsp12585A585AgcTgcC99AY.1030.000056
ORF1ab/nsp12585A585TGctAct88AY.1030.00005
ORF1ab/nsp12585A585VgCtgTt88AY.1170.000676
ORF1ab/nsp12585A585SGctTct88B.1.177.540.004851
ORF1ab/nsp12585A585TGctAct88B.1.6210.000708
ORF1ab/nsp12585A585VgCtgTt77AY.1020.000186
ORF1ab/nsp12585A585AgcTgcC77AY.250.000042
ORF1ab/nsp12585A585VgCtgTt77AY.340.000679
ORF1ab/nsp12585A585SGctTct77AY.430.000031
ORF1ab/nsp12585A585VgCtgTt77AY.550.006422
ORF1ab/nsp12585A585SGctTct77B.10.000064
ORF1ab/nsp12585A585VgCtgTt77B.1.351.30.006135
ORF1ab/nsp12585A585AgcTgcC77P.10.00011
ORF1ab/nsp12585A585SGctTct77R.10.00063
ORF1ab/nsp12585A585AgcTgcC66AY.1000.000276
ORF1ab/nsp12585A585SGctTct66AY.1000.000276
ORF1ab/nsp12585A585VgCtgTt66AY.1050.003859
ORF1ab/nsp12585A585VgCtgTt66AY.260.00017
ORF1ab/nsp12585A585TGctAct66AY.690.00112
ORF1ab/nsp12585A585VgCtgTt66B.1.1.510.010309
ORF1ab/nsp12585A585SGctTct55AY.1030.000031
ORF1ab/nsp12585A585VgCtgTt55AY.120.00158
ORF1ab/nsp12585A585TGctAct55AY.40.000008
ORF1ab/nsp12585A585VgCtgTt55AY.50.000103
ORF1ab/nsp12585A585VgCtgTt55AY.9.10.000419
ORF1ab/nsp12585A585VgCtgTt55AY.9.20.000184
ORF1ab/nsp12585A585SGctTct55B.1.1770.000066
ORF1ab/nsp12585A585AgcTgcC55B.1.360.00073
ORF1ab/nsp12585A585SGctTct55B.1.5250.000566
ORF1ab/nsp12585A585VgCtgTt55B.400.001821
ORF1ab/nsp12585A585AgcTgcC55C.370.00058
ORF1ab/nsp12585A585VgCtgTt44AY.1180.000251
ORF1ab/nsp12585A585VgCtgTt44AY.390.000099
ORF1ab/nsp12585A585VgCtgTt44AY.5.30.00135
ORF1ab/nsp12585A585AgcTgcC34AY.980.000237
ORF1ab/nsp12585A585AgcTgcA14AY.980.000079
ORF1ab/nsp12585A585TGctAct44B.10.000037
ORF1ab/nsp12585A585TGctAct44B.1.10.000073
ORF1ab/nsp12585A585VgCtgTt44B.1.1.5190.000159
ORF1ab/nsp12585A585DgCtgAt44B.1.1.70.000004
ORF1ab/nsp12585A585AgcTgcC44B.1.2210.000284
ORF1ab/nsp12585A585TGctAct44B.1.617.20.000015
ORF1ab/nsp12585A585GgCtgGt33All0.000001
ORF1ab/nsp12585A585AgcTgcC33AY.1160.00086
ORF1ab/nsp12585A585SGctTct33AY.1180.000188
ORF1ab/nsp12585A585VgCtgTt33AY.200.000117
ORF1ab/nsp12585A585SGctTct33AY.3.10.000256
ORF1ab/nsp12585A585delGCT---33AY.40.000005
ORF1ab/nsp12585A585AgcTgcC33B0.000383
ORF1ab/nsp12585A585AgcTgcC33B.1.10.000054
ORF1ab/nsp12585A585VgCtgTt33B.1.1.280.000934
ORF1ab/nsp12585A585SGctTct33B.1.1.3060.001315
ORF1ab/nsp12585A585AgcTgcC33B.1.1.3250.076923
ORF1ab/nsp12585A585SGctTct33B.1.177.230.009709
ORF1ab/nsp12585A585SGctTct33B.1.20.000026
ORF1ab/nsp12585A585SGctTct33B.1.3980.008929
ORF1ab/nsp12585A585VgCtgTt33P.10.000047
ORF1ab/nsp12585A585VgCtgTt33P.1.140.000143
ORF1ab/nsp12585A585TGctAct220.111111
ORF1ab/nsp12585A585VgCtgTt22A.10.000564
ORF1ab/nsp12585A585FGCtTTt22All0
ORF1ab/nsp12585A585PGctCct22All0
ORF1ab/nsp12585A585VgCtgTt22AY.1000.000092
ORF1ab/nsp12585A585AgcTgcC22AY.1020.000053
ORF1ab/nsp12585A585VgCtgTt22AY.1160.000574
ORF1ab/nsp12585A585SGctTct22AY.120.000632
ORF1ab/nsp12585A585TGctAct22AY.30.00002
ORF1ab/nsp12585A585SGctTct22AY.30.00002
ORF1ab/nsp12585A585AgcTgcC22AY.320.001065
ORF1ab/nsp12585A585TGctAct22AY.330.000134
ORF1ab/nsp12585A585delGCT---22AY.4.50.000215
ORF1ab/nsp12585A585AgcTgcC22AY.430.000009
ORF1ab/nsp12585A585AgcTgcC22AY.440.000012
ORF1ab/nsp12585A585AgcTgcC22AY.450.000243
ORF1ab/nsp12585A585VgCtgTt22AY.470.000062
ORF1ab/nsp12585A585AgcTgcC22AY.50.000041
ORF1ab/nsp12585A585TGctAct22AY.590.001059
ORF1ab/nsp12585A585VgCtgTt22AY.700.000417
ORF1ab/nsp12585A585VgCtgTt22AY.90.000135
ORF1ab/nsp12585A585VgCtgTt22AY.99.20.000184
ORF1ab/nsp12585A585VgCtgTt22B.1.1.2160.001781
ORF1ab/nsp12585A585GgCtgGt22B.1.1.70.000002
ORF1ab/nsp12585A585DgCtgAt22B.1.177.860.000367
ORF1ab/nsp12585A585DgCtgAt22B.1.221.20.008032
ORF1ab/nsp12585A585SGctTct22B.1.4990.002101
ORF1ab/nsp12585A585AgcTgcC22B.1.5260.000047
ORF1ab/nsp12585A585VgCtgTt22B.1.5260.000047
ORF1ab/nsp12585A585AgcTgcC22B.1.5270.007407
ORF1ab/nsp12585A585TGctAct22Q.80.00033
ORF1ab/nsp12585A585AgcTgcC22R.10.00018
ORF1ab/nsp12585A585SGctTct11A.10.000282
ORF1ab/nsp12585A585SGctTct11A.20.000662
ORF1ab/nsp12585A585FGCtTTt11A.280.002646
ORF1ab/nsp12585A585VgCtgTt11AD.20.000219
ORF1ab/nsp12585A585delGCT---11AD.20.000219
ORF1ab/nsp12585A585VgCtgTt11AE.60.038462
ORF1ab/nsp12585A585del2gCTg--11All0
ORF1ab/nsp12585A585del1gcTgc-11All0
ORF1ab/nsp12585A585VgCtgTt11AY.100.00053
ORF1ab/nsp12585A585GgCtgGt11AY.1010.00049
ORF1ab/nsp12585A585VgCtgTt11AY.1060.000335
ORF1ab/nsp12585A585VgCtgTt11AY.1080.001103
ORF1ab/nsp12585A585SGctTct11AY.110.001339
ORF1ab/nsp12585A585VgCtgTt11AY.1100.000113
ORF1ab/nsp12585A585AgcTgcC11AY.1100.000113
ORF1ab/nsp12585A585AgcTgcC11AY.1130.000142
ORF1ab/nsp12585A585AgcTgcC11AY.1170.000085
ORF1ab/nsp12585A585AgcTgcC11AY.1180.000063
ORF1ab/nsp12585A585SGctTct11AY.1190.000035
ORF1ab/nsp12585A585VgCtgTt11AY.1190.000035
ORF1ab/nsp12585A585TGctAct11AY.1190.000035
ORF1ab/nsp12585A585AgcTgcC11AY.170.008197
ORF1ab/nsp12585A585AgcTgcC11AY.200.000039
ORF1ab/nsp12585A585VgCtgTt11AY.230.00007
ORF1ab/nsp12585A585VgCtgTt11AY.240.000431
ORF1ab/nsp12585A585SGctTct11AY.240.000431
ORF1ab/nsp12585A585AgcTgcC11AY.270.000065
ORF1ab/nsp12585A585VgCtgTt11AY.290.000016
ORF1ab/nsp12585A585TGctAct11AY.290.000016
ORF1ab/nsp12585A585FGCtTTt11AY.30.00001
ORF1ab/nsp12585A585AgcTgcC11AY.330.000067
ORF1ab/nsp12585A585AgcTgcC11AY.390.000025
ORF1ab/nsp12585A585SGctTct11AY.390.000025
ORF1ab/nsp12585A585VgCtgTt11AY.39.10.00004
ORF1ab/nsp12585A585AgcTgcC11AY.39.10.00004
ORF1ab/nsp12585A585SGctTct11AY.39.10.00004
ORF1ab/nsp12585A585DgCtgAt11AY.40.000002
ORF1ab/nsp12585A585VgCtgTt11AY.410.000294
ORF1ab/nsp12585A585VgCtgTt11AY.420.00004
ORF1ab/nsp12585A585delGCT---11AY.430.000004
ORF1ab/nsp12585A585TGctAct11AY.440.000006
ORF1ab/nsp12585A585SGctTct11AY.450.000122
ORF1ab/nsp12585A585VgCtgTt11AY.450.000122
ORF1ab/nsp12585A585AgcTgcC11AY.460.000104
ORF1ab/nsp12585A585SGctTct11AY.460.000104
ORF1ab/nsp12585A585SGctTct11AY.46.40.000165
ORF1ab/nsp12585A585AgcTgcC11AY.470.000031
ORF1ab/nsp12585A585SGctTct11AY.5.40.000277
ORF1ab/nsp12585A585del2gCTg--11AY.520.000814
ORF1ab/nsp12585A585VgCtgTt11AY.540.000095
ORF1ab/nsp12585A585AgcTgcG11AY.550.000917
ORF1ab/nsp12585A585SGctTct11AY.60.000041
ORF1ab/nsp12585A585TGctAct11AY.610.000105
ORF1ab/nsp12585A585VgCtgTt11AY.620.000436
ORF1ab/nsp12585A585VgCtgTt11AY.680.000274
ORF1ab/nsp12585A585VgCtgTt11AY.750.000056
ORF1ab/nsp12585A585VgCtgTt11AY.75.10.00018
ORF1ab/nsp12585A585SGctTct11AY.890.004902
ORF1ab/nsp12585A585SGctTct11AY.90.000068
ORF1ab/nsp12585A585AgcTgcC11AY.900.000684
ORF1ab/nsp12585A585VgCtgTt11AY.920.000287
ORF1ab/nsp12585A585AgcTgcC11AY.99.20.000092
ORF1ab/nsp12585A585VgCtgTt11B0.000128
ORF1ab/nsp12585A585TGctAct11B0.000128
ORF1ab/nsp12585A585SGctTct11B0.000128
ORF1ab/nsp12585A585PGctCct11B0.000128
ORF1ab/nsp12585A585PGctCct11B.10.000009
ORF1ab/nsp12585A585AgcTgcA11B.10.000009
ORF1ab/nsp12585A585SGctTct11B.1.10.000018
ORF1ab/nsp12585A585DgCtgAt11B.1.10.000018
ORF1ab/nsp12585A585DgCtgAt11B.1.1.10.000327
ORF1ab/nsp12585A585delGCT---11B.1.1.1390.022727
ORF1ab/nsp12585A585TGctAct11B.1.1.1860.003436
ORF1ab/nsp12585A585SGctTct11B.1.1.2160.00089
ORF1ab/nsp12585A585TGctAct11B.1.1.2220.000204
ORF1ab/nsp12585A585VgCtgTt11B.1.1.250.000569
ORF1ab/nsp12585A585VgCtgTt11B.1.1.3180.000302
ORF1ab/nsp12585A585SGctTct11B.1.1.3290.003846
ORF1ab/nsp12585A585SGctTct11B.1.1.370.000193
ORF1ab/nsp12585A585VgCtgTt11B.1.1.4660.008696
ORF1ab/nsp12585A585VgCtgTt11B.1.1.570.011494
ORF1ab/nsp12585A585SGctTct11B.1.1040.00369
ORF1ab/nsp12585A585AgcTgcC11B.1.1310.008772
ORF1ab/nsp12585A585delGCT---11B.1.1600.000031
ORF1ab/nsp12585A585SGctTct11B.1.160.160.000929
ORF1ab/nsp12585A585delGCT---11B.1.160.230.004831
ORF1ab/nsp12585A585AgcTgcC11B.1.160.300.002976
ORF1ab/nsp12585A585delGCT---11B.1.1770.000013
ORF1ab/nsp12585A585del1gcTgc-11B.1.1770.000013
ORF1ab/nsp12585A585delGCT---11B.1.177.160.000664
ORF1ab/nsp12585A585VgCtgTt11B.1.177.40.000211
ORF1ab/nsp12585A585delGCT---11B.1.177.540.000606
ORF1ab/nsp12585A585delGCT---11B.1.177.600.000218
ORF1ab/nsp12585A585delGCT---11B.1.177.810.000189
ORF1ab/nsp12585A585VgCtgTt11B.1.177.860.000183
ORF1ab/nsp12585A585TGctAct11B.1.2210.000071
ORF1ab/nsp12585A585VgCtgTt11B.1.2340.000132
ORF1ab/nsp12585A585AgcTgcC11B.1.258.110.000396
ORF1ab/nsp12585A585TGctAct11B.1.2670.018519
ORF1ab/nsp12585A585SGctTct11B.1.3130.006579
ORF1ab/nsp12585A585VgCtgTt11B.1.3510.00003
ORF1ab/nsp12585A585TGctAct11B.1.36.360.000602
ORF1ab/nsp12585A585VgCtgTt11B.1.3980.002976
ORF1ab/nsp12585A585AgcTgcG11B.1.4000.000429
ORF1ab/nsp12585A585VgCtgTt11B.1.4080.00369
ORF1ab/nsp12585A585VgCtgTt11B.1.4090.000781
ORF1ab/nsp12585A585AgcTgcC11B.1.4270.00005
ORF1ab/nsp12585A585AgcTgcC11B.1.4290.000024
ORF1ab/nsp12585A585VgCtgTt11B.1.4290.000024
ORF1ab/nsp12585A585SGctTct11B.1.4290.000024
ORF1ab/nsp12585A585VgCtgTt11B.1.4560.003268
ORF1ab/nsp12585A585VgCtgTt11B.1.4690.00361
ORF1ab/nsp12585A585AgcTgcA11B.1.5460.003704
ORF1ab/nsp12585A585VgCtgTt11B.1.5820.000491
ORF1ab/nsp12585A585SGctTct11B.1.5890.007576
ORF1ab/nsp12585A585TGctAct11B.1.5960.000087
ORF1ab/nsp12585A585AgcTgcC11B.1.5960.000087
ORF1ab/nsp12585A585AgcTgcC11B.1.6210.000089
ORF1ab/nsp12585A585VgCtgTt11B.1.6210.000089
ORF1ab/nsp12585A585AgcTgcC11B.400.000364
ORF1ab/nsp12585A585TGctAct11C.140.004329
ORF1ab/nsp12585A585TGctAct11C.260.007353
ORF1ab/nsp12585A585AgcTgcC11C.350.000774
ORF1ab/nsp12585A585TGctAct11C.360.000911
ORF1ab/nsp12585A585TGctAct11P.10.000016
ORF1ab/nsp12585A585VgCtgTt11P.1.100.000269
ORF1ab/nsp12585A585SGctTct11P.1.120.000484
ORF1ab/nsp12585A585AgcTgcC11P.20.000187
ORF1ab/nsp12585A585VgCtgTt11P.30.001595