CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 585 | A585V | A4977V | nonsyn | gCt | gTt | 2392 | 2392 | 1 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585S | A4977S | nonsyn | Gct | Tct | 509 | 509 | 1 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585A | A4977A | syn | gcT | gcC | 479 | 437 | 0.912317 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585A | A4977A | syn | gcT | gcA | 479 | 39 | 0.0814196 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585A | A4977A | syn | gcT | gcG | 479 | 3 | 0.00626305 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585T | A4977T | nonsyn | Gct | Act | 311 | 311 | 1 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585del | A4977del | del | GCT | --- | 44 | 44 | 1 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585D | A4977D | nonsyn | gCt | gAt | 33 | 33 | 1 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585G | A4977G | nonsyn | gCt | gGt | 3 | 3 | 1 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585P | A4977P | nonsyn | Gct | Cct | 2 | 2 | 1 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585F | A4977F | nonsyn | GCt | TTt | 2 | 2 | 1 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585del2 | A4977del2 | del | gCT | g-- | 1 | 1 | 1 | 15193-15195 |
ORF1ab/nsp12 | 585 | A585del1 | A4977del1 | del | gcT | gc- | 1 | 1 | 1 | 15193-15195 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 2392 | 2392 | All | 0.000457 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1565 | 1565 | AY.3.1 | 0.13343 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 509 | 509 | All | 0.000097 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 437 | 479 | All | 0.000084 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcA | 39 | 479 | All | 0.000007 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcG | 3 | 479 | All | 0.000001 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 311 | 311 | All | 0.000059 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 192 | 192 | B.1.1.7 | 0.000172 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 185 | 185 | B.1.1.7 | 0.000166 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 146 | 155 | B.1.617.2 | 0.00055 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcA | 9 | 155 | B.1.617.2 | 0.000034 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 92 | 92 | B.1.243 | 0.006402 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 77 | 77 | AY.4 | 0.00012 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 75 | 75 | Q.1 | 0.009474 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 71 | 71 | B.1.1.7 | 0.000064 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 68 | 68 | AY.25 | 0.000409 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 68 | 68 | AY.4 | 0.000106 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 51 | 52 | B.1.177 | 0.000672 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcG | 1 | 52 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 46 | 46 | B.1.460 | 0.821429 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 44 | 44 | All | 0.000008 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 44 | 44 | AY.44 | 0.000268 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 38 | 38 | B.1.2 | 0.000335 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 36 | 36 | AY.25 | 0.000217 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp12 | 585 | A585D | gCt | gAt | 33 | 33 | All | 0.000006 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 33 | 33 | AY.7 | 0.006468 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 30 | 30 | A.28 | 0.079365 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 30 | 30 | B.1.1 | 0.000544 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 29 | 29 | B.1.1.7 | 0.000026 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 27 | 27 | AY.3 | 0.000269 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcA | 25 | 25 | B.1.1.519 | 0.000993 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 23 | 23 | AY.3 | 0.000229 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 22 | 22 | B.1 | 0.000202 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 22 | 22 | B.1.177 | 0.00029 |
ORF1ab/nsp12 | 585 | A585D | gCt | gAt | 22 | 22 | C.39 | 0.415094 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 19 | 21 | B.1.1.7 | 0.000017 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcA | 2 | 21 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 20 | 20 | P.1 | 0.000315 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 19 | 19 | AY.36 | 0.002816 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 16 | 16 | AY.101 | 0.007847 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 13 | 13 | AY.121 | 0.001759 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 8 | 8 | B.1.177.54 | 0.004851 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 7 | 7 | AY.55 | 0.006422 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 7 | 7 | B.1.351.3 | 0.006135 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 6 | 6 | AY.105 | 0.003859 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 6 | 6 | AY.69 | 0.00112 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 6 | 6 | B.1.1.51 | 0.010309 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 3 | 4 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcA | 1 | 4 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp12 | 585 | A585D | gCt | gAt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp12 | 585 | A585G | gCt | gGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 3 | 3 | B | 0.000383 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 3 | 3 | B.1.1.325 | 0.076923 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 3 | 3 | B.1.177.23 | 0.009709 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 3 | 3 | B.1.398 | 0.008929 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp12 | 585 | A585F | GCt | TTt | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 585 | A585P | Gct | Cct | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp12 | 585 | A585G | gCt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 585 | A585D | gCt | gAt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp12 | 585 | A585D | gCt | gAt | 2 | 2 | B.1.221.2 | 0.008032 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 585 | A585F | GCt | TTt | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AE.6 | 0.038462 |
ORF1ab/nsp12 | 585 | A585del2 | gCT | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 585 | A585del1 | gcT | gc- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 585 | A585G | gCt | gGt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 585 | A585F | GCt | TTt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 585 | A585D | gCt | gAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 585 | A585del2 | gCT | g-- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcG | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 585 | A585P | Gct | Cct | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 585 | A585P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 585 | A585D | gCt | gAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 585 | A585D | gCt | gAt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 585 | A585del1 | gcT | gc- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 585 | A585del | GCT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | B.1.267 | 0.018519 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcG | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcA | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 585 | A585T | Gct | Act | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 585 | A585S | Gct | Tct | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 585 | A585A | gcT | gcC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 585 | A585V | gCt | gTt | 1 | 1 | P.3 | 0.001595 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|