CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 572

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12572H572HH4964HsyncaTcaC639639115154-15156
ORF1ab/nsp12572H572YH4964YnonsynCatTat320320115154-15156
ORF1ab/nsp12572H572delH4964deldelCAT---3434115154-15156
ORF1ab/nsp12572H572LH4964LnonsyncAtcTt13120.92307715154-15156
ORF1ab/nsp12572H572LH4964LnonsyncATcTC1310.076923115154-15156
ORF1ab/nsp12572H572NH4964NnonsynCatAat88115154-15156
ORF1ab/nsp12572H572QH4964QnonsyncaTcaG850.62515154-15156
ORF1ab/nsp12572H572QH4964QnonsyncaTcaA830.37515154-15156
ORF1ab/nsp12572H572RH4964RnonsyncATcGG630.515154-15156
ORF1ab/nsp12572H572RH4964RnonsyncAtcGt630.515154-15156
ORF1ab/nsp12572H572del1H4964del1delCat-at520.415154-15156
ORF1ab/nsp12572H572del1H4964del1delcaTca-520.415154-15156
ORF1ab/nsp12572H572del1H4964del1delCAtT-t510.215154-15156
ORF1ab/nsp12572H572DH4964DnonsynCatGat44115154-15156
ORF1ab/nsp12572H572SH4964SnonsynCATTCC420.515154-15156
ORF1ab/nsp12572H572AH4964AnonsynCAtGCt420.515154-15156
ORF1ab/nsp12572H572AH4964AnonsynCATGCC420.515154-15156
ORF1ab/nsp12572H572SH4964SnonsynCATTCA410.2515154-15156
ORF1ab/nsp12572H572SH4964SnonsynCAtTCt410.2515154-15156
ORF1ab/nsp12572H572FH4964FnonsynCAtTTt33115154-15156
ORF1ab/nsp12572H572PH4964PnonsyncAtcCt22115154-15156
ORF1ab/nsp12572H572CH4964CnonsynCATTGC11115154-15156
ORF1ab/nsp12572H572KH4964KnonsynCaTAaG11115154-15156

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12572H572HcaTcaC639639All0.000122
ORF1ab/nsp12572H572YCatTat320320All0.000061
ORF1ab/nsp12572H572HcaTcaC216216B.1.1.70.000193
ORF1ab/nsp12572H572HcaTcaC134134B.1.1.2360.924138
ORF1ab/nsp12572H572YCatTat6767AY.40.000104
ORF1ab/nsp12572H572HcaTcaC6464B.1.20.000564
ORF1ab/nsp12572H572YCatTat3838B.1.1.70.000034
ORF1ab/nsp12572H572delCAT---3434All0.000007
ORF1ab/nsp12572H572HcaTcaC2727P.1.130.024259
ORF1ab/nsp12572H572HcaTcaC2626B.1.177.160.017276
ORF1ab/nsp12572H572HcaTcaC1919AY.440.000116
ORF1ab/nsp12572H572YCatTat1818AY.1030.000112
ORF1ab/nsp12572H572HcaTcaC1717AY.40.000026
ORF1ab/nsp12572H572YCatTat1717B.1.20.00015
ORF1ab/nsp12572H572YCatTat1717B.1.617.20.000064
ORF1ab/nsp12572H572HcaTcaC1515B.1.617.20.000056
ORF1ab/nsp12572H572LcAtcTt1213All0.000002
ORF1ab/nsp12572H572LcATcTC113All0
ORF1ab/nsp12572H572HcaTcaC1212B.1.10.000218
ORF1ab/nsp12572H572HcaTcaC1111B.10.000101
ORF1ab/nsp12572H572YCatTat1010AY.440.000061
ORF1ab/nsp12572H572YCatTat1010B.10.000092
ORF1ab/nsp12572H572YCatTat99AY.250.000054
ORF1ab/nsp12572H572NCatAat88All0.000002
ORF1ab/nsp12572H572QcaTcaG58All0.000001
ORF1ab/nsp12572H572QcaTcaA38All0.000001
ORF1ab/nsp12572H572YCatTat77AY.30.00007
ORF1ab/nsp12572H572YCatTat77AY.430.000031
ORF1ab/nsp12572H572delCAT---77B.1.1.70.000006
ORF1ab/nsp12572H572HcaTcaC77B.1.1600.000218
ORF1ab/nsp12572H572RcAtcGt36All0.000001
ORF1ab/nsp12572H572RcATcGG36All0.000001
ORF1ab/nsp12572H572del1Cat-at25All0
ORF1ab/nsp12572H572del1caTca-25All0
ORF1ab/nsp12572H572del1CAtT-t15All0
ORF1ab/nsp12572H572HcaTcaC55B.1.1.630.001929
ORF1ab/nsp12572H572YCatTat55B.1.1770.000066
ORF1ab/nsp12572H572HcaTcaC55B.1.1770.000066
ORF1ab/nsp12572H572HcaTcaC55P.10.000079
ORF1ab/nsp12572H572DCatGat44All0.000001
ORF1ab/nsp12572H572ACATGCC24All0
ORF1ab/nsp12572H572ACAtGCt24All0
ORF1ab/nsp12572H572SCATTCC24All0
ORF1ab/nsp12572H572SCAtTCt14All0
ORF1ab/nsp12572H572SCATTCA14All0
ORF1ab/nsp12572H572YCatTat44AY.200.000155
ORF1ab/nsp12572H572YCatTat44AY.300.001583
ORF1ab/nsp12572H572YCatTat44AY.4.20.000087
ORF1ab/nsp12572H572YCatTat44AY.420.000161
ORF1ab/nsp12572H572YCatTat44AY.99.20.000369
ORF1ab/nsp12572H572HcaTcaC44B.1.1.1890.006051
ORF1ab/nsp12572H572YCatTat44B.1.4290.000094
ORF1ab/nsp12572H572FCAtTTt33All0.000001
ORF1ab/nsp12572H572YCatTat33AY.1180.000188
ORF1ab/nsp12572H572YCatTat33AY.230.000209
ORF1ab/nsp12572H572YCatTat33AY.3.10.000256
ORF1ab/nsp12572H572delCAT---33AY.40.000005
ORF1ab/nsp12572H572HcaTcaC33AY.430.000013
ORF1ab/nsp12572H572HcaTcaC33AY.630.001161
ORF1ab/nsp12572H572YCatTat33AY.98.10.000145
ORF1ab/nsp12572H572YCatTat33B.1.10.000054
ORF1ab/nsp12572H572YCatTat33B.1.1820.021739
ORF1ab/nsp12572H572FCAtTTt33B.1.20.000026
ORF1ab/nsp12572H572YCatTat33B.1.3370.01676
ORF1ab/nsp12572H572HcaTcaC33B.1.36.290.001552
ORF1ab/nsp12572H572YCatTat33B.1.5680.003333
ORF1ab/nsp12572H572YCatTat33D.20.000225
ORF1ab/nsp12572H572YCatTat33P.10.000047
ORF1ab/nsp12572H572ACATGCC220.111111
ORF1ab/nsp12572H572SCATTCC220.111111
ORF1ab/nsp12572H572QcaTcaG220.111111
ORF1ab/nsp12572H572PcAtcCt22All0
ORF1ab/nsp12572H572YCatTat22AY.1020.000053
ORF1ab/nsp12572H572HcaTcaC22AY.1030.000012
ORF1ab/nsp12572H572YCatTat22AY.1190.000071
ORF1ab/nsp12572H572HcaTcaC22AY.250.000012
ORF1ab/nsp12572H572YCatTat22AY.290.000032
ORF1ab/nsp12572H572HcaTcaC22AY.390.000049
ORF1ab/nsp12572H572YCatTat22AY.390.000049
ORF1ab/nsp12572H572YCatTat22AY.4.50.000215
ORF1ab/nsp12572H572RcATcGG22AY.420.00008
ORF1ab/nsp12572H572RcAtcGt12AY.430.000004
ORF1ab/nsp12572H572RcATcGG12AY.430.000004
ORF1ab/nsp12572H572YCatTat22AY.50.000041
ORF1ab/nsp12572H572HcaTcaC22AY.650.001066
ORF1ab/nsp12572H572YCatTat22AY.660.002139
ORF1ab/nsp12572H572HcaTcaC22AY.840.000875
ORF1ab/nsp12572H572LcAtcTt22B.10.000018
ORF1ab/nsp12572H572LcAtcTt22B.1.10.000036
ORF1ab/nsp12572H572DCatGat22B.1.10.000036
ORF1ab/nsp12572H572YCatTat22B.1.1.2260.011628
ORF1ab/nsp12572H572HcaTcaC22B.1.1.3180.000604
ORF1ab/nsp12572H572delCAT---22B.1.1770.000026
ORF1ab/nsp12572H572LcATcTC12B.1.20.000009
ORF1ab/nsp12572H572LcAtcTt12B.1.20.000009
ORF1ab/nsp12572H572del1CAtT-t12B.1.20.000009
ORF1ab/nsp12572H572del1caTca-12B.1.20.000009
ORF1ab/nsp12572H572HcaTcaC22B.1.2210.000142
ORF1ab/nsp12572H572HcaTcaC22B.1.3510.000059
ORF1ab/nsp12572H572HcaTcaC22B.1.4270.000101
ORF1ab/nsp12572H572HcaTcaC22B.1.4290.000047
ORF1ab/nsp12572H572YCatTat22B.1.4360.002058
ORF1ab/nsp12572H572YCatTat22B.1.4700.002809
ORF1ab/nsp12572H572HcaTcaC22B.1.5110.068966
ORF1ab/nsp12572H572YCatTat22B.1.5260.000047
ORF1ab/nsp12572H572PcAtcCt22B.1.617.20.000008
ORF1ab/nsp12572H572delCAT---22B.1.617.20.000008
ORF1ab/nsp12572H572HcaTcaC22B.1.6210.000177
ORF1ab/nsp12572H572delCAT---22P.10.000032
ORF1ab/nsp12572H572NCatAat11A.20.000662
ORF1ab/nsp12572H572NCatAat11A.2.40.003367
ORF1ab/nsp12572H572HcaTcaC11A.2.40.003367
ORF1ab/nsp12572H572CCATTGC11All0
ORF1ab/nsp12572H572KCaTAaG11All0
ORF1ab/nsp12572H572NCatAat11AP.10.001502
ORF1ab/nsp12572H572YCatTat11AY.1000.000046
ORF1ab/nsp12572H572YCatTat11AY.1010.00049
ORF1ab/nsp12572H572HcaTcaC11AY.1070.000466
ORF1ab/nsp12572H572RcAtcGt11AY.1130.000142
ORF1ab/nsp12572H572YCatTat11AY.1130.000142
ORF1ab/nsp12572H572HcaTcaC11AY.1140.000231
ORF1ab/nsp12572H572YCatTat11AY.1140.000231
ORF1ab/nsp12572H572LcAtcTt11AY.1170.000085
ORF1ab/nsp12572H572NCatAat11AY.1170.000085
ORF1ab/nsp12572H572HcaTcaC11AY.1180.000063
ORF1ab/nsp12572H572HcaTcaC11AY.1200.000037
ORF1ab/nsp12572H572YCatTat11AY.1210.000135
ORF1ab/nsp12572H572YCatTat11AY.140.000088
ORF1ab/nsp12572H572HcaTcaC11AY.200.000039
ORF1ab/nsp12572H572HcaTcaC11AY.230.00007
ORF1ab/nsp12572H572delCAT---11AY.250.000006
ORF1ab/nsp12572H572LcAtcTt11AY.250.000006
ORF1ab/nsp12572H572HcaTcaC11AY.260.000028
ORF1ab/nsp12572H572YCatTat11AY.260.000028
ORF1ab/nsp12572H572YCatTat11AY.29.10.000221
ORF1ab/nsp12572H572HcaTcaC11AY.30.00001
ORF1ab/nsp12572H572delCAT---11AY.30.00001
ORF1ab/nsp12572H572HcaTcaC11AY.320.000532
ORF1ab/nsp12572H572HcaTcaC11AY.330.000067
ORF1ab/nsp12572H572HcaTcaC11AY.360.000148
ORF1ab/nsp12572H572YCatTat11AY.39.10.00004
ORF1ab/nsp12572H572NCatAat11AY.40.000002
ORF1ab/nsp12572H572delCAT---11AY.4.50.000107
ORF1ab/nsp12572H572HcaTcaC11AY.420.00004
ORF1ab/nsp12572H572delCAT---11AY.430.000004
ORF1ab/nsp12572H572ACAtGCt11AY.440.000006
ORF1ab/nsp12572H572LcAtcTt11AY.440.000006
ORF1ab/nsp12572H572DCatGat11AY.440.000006
ORF1ab/nsp12572H572delCAT---11AY.440.000006
ORF1ab/nsp12572H572YCatTat11AY.470.000031
ORF1ab/nsp12572H572YCatTat11AY.480.000465
ORF1ab/nsp12572H572HcaTcaC11AY.50.000021
ORF1ab/nsp12572H572HcaTcaC11AY.5.30.000337
ORF1ab/nsp12572H572YCatTat11AY.530.000288
ORF1ab/nsp12572H572HcaTcaC11AY.590.00053
ORF1ab/nsp12572H572delCAT---11AY.590.00053
ORF1ab/nsp12572H572HcaTcaC11AY.610.000105
ORF1ab/nsp12572H572HcaTcaC11AY.620.000436
ORF1ab/nsp12572H572delCAT---11AY.670.000464
ORF1ab/nsp12572H572YCatTat11AY.680.000274
ORF1ab/nsp12572H572HcaTcaC11AY.740.000116
ORF1ab/nsp12572H572HcaTcaC11AY.750.000056
ORF1ab/nsp12572H572YCatTat11AY.840.000437
ORF1ab/nsp12572H572delCAT---11AY.840.000437
ORF1ab/nsp12572H572YCatTat11AY.90.000068
ORF1ab/nsp12572H572YCatTat11AY.930.000273
ORF1ab/nsp12572H572HcaTcaC11AY.950.000761
ORF1ab/nsp12572H572HcaTcaC11AY.98.10.000048
ORF1ab/nsp12572H572delCAT---11AY.990.001049
ORF1ab/nsp12572H572NCatAat11B.10.000009
ORF1ab/nsp12572H572del1caTca-11B.10.000009
ORF1ab/nsp12572H572QcaTcaG11B.10.000009
ORF1ab/nsp12572H572KCaTAaG11B.10.000009
ORF1ab/nsp12572H572delCAT---11B.10.000009
ORF1ab/nsp12572H572CCATTGC11B.1.10.000018
ORF1ab/nsp12572H572del1Cat-at11B.1.10.000018
ORF1ab/nsp12572H572RcAtcGt11B.1.10.000018
ORF1ab/nsp12572H572delCAT---11B.1.1.1390.022727
ORF1ab/nsp12572H572YCatTat11B.1.1.2410.00207
ORF1ab/nsp12572H572YCatTat11B.1.1.2580.003257
ORF1ab/nsp12572H572YCatTat11B.1.1.280.000311
ORF1ab/nsp12572H572YCatTat11B.1.1.2860.002899
ORF1ab/nsp12572H572delCAT---11B.1.1.3060.000438
ORF1ab/nsp12572H572HcaTcaC11B.1.1.3120.001912
ORF1ab/nsp12572H572YCatTat11B.1.1.3770.001381
ORF1ab/nsp12572H572HcaTcaC11B.1.1.3980.003226
ORF1ab/nsp12572H572YCatTat11B.1.1.4160.000905
ORF1ab/nsp12572H572YCatTat11B.1.1.500.000679
ORF1ab/nsp12572H572YCatTat11B.1.1.5190.00004
ORF1ab/nsp12572H572HcaTcaC11B.1.1.5190.00004
ORF1ab/nsp12572H572YCatTat11B.1.1.630.000386
ORF1ab/nsp12572H572LcAtcTt11B.1.1.70.000001
ORF1ab/nsp12572H572YCatTat11B.1.160.160.000929
ORF1ab/nsp12572H572delCAT---11B.1.160.230.004831
ORF1ab/nsp12572H572LcAtcTt11B.1.1770.000013
ORF1ab/nsp12572H572HcaTcaC11B.1.177.210.000076
ORF1ab/nsp12572H572HcaTcaC11B.1.177.530.002392
ORF1ab/nsp12572H572delCAT---11B.1.177.540.000606
ORF1ab/nsp12572H572YCatTat11B.1.177.570.000281
ORF1ab/nsp12572H572LcAtcTt11B.1.177.570.000281
ORF1ab/nsp12572H572HcaTcaC11B.1.177.580.001332
ORF1ab/nsp12572H572delCAT---11B.1.177.600.000218
ORF1ab/nsp12572H572delCAT---11B.1.177.810.000189
ORF1ab/nsp12572H572SCATTCA11B.1.20.000009
ORF1ab/nsp12572H572NCatAat11B.1.20.000009
ORF1ab/nsp12572H572YCatTat11B.1.2060.000816
ORF1ab/nsp12572H572QcaTcaG11B.1.2310.032258
ORF1ab/nsp12572H572HcaTcaC11B.1.2400.000216
ORF1ab/nsp12572H572HcaTcaC11B.1.3110.000275
ORF1ab/nsp12572H572HcaTcaC11B.1.360.000146
ORF1ab/nsp12572H572YCatTat11B.1.36.180.00042
ORF1ab/nsp12572H572delCAT---11B.1.36.180.00042
ORF1ab/nsp12572H572YCatTat11B.1.36.380.001642
ORF1ab/nsp12572H572HcaTcaC11B.1.36.70.004
ORF1ab/nsp12572H572YCatTat11B.1.3690.000285
ORF1ab/nsp12572H572SCAtTCt11B.1.3710.001122
ORF1ab/nsp12572H572QcaTcaG11B.1.4290.000024
ORF1ab/nsp12572H572QcaTcaA11B.1.4350.011364
ORF1ab/nsp12572H572HcaTcaC11B.1.438.10.000107
ORF1ab/nsp12572H572YCatTat11B.1.466.20.000391
ORF1ab/nsp12572H572HcaTcaC11B.1.4930.025641
ORF1ab/nsp12572H572del1Cat-at11B.1.5260.000024
ORF1ab/nsp12572H572YCatTat11B.1.5510.00129
ORF1ab/nsp12572H572YCatTat11B.1.5610.000397
ORF1ab/nsp12572H572YCatTat11B.1.5820.000491
ORF1ab/nsp12572H572QcaTcaA11B.1.5950.000261
ORF1ab/nsp12572H572HcaTcaC11B.1.5950.000261
ORF1ab/nsp12572H572YCatTat11B.1.595.40.007299
ORF1ab/nsp12572H572YCatTat11B.1.6020.006536
ORF1ab/nsp12572H572QcaTcaA11B.1.617.20.000004
ORF1ab/nsp12572H572NCatAat11B.1.617.20.000004
ORF1ab/nsp12572H572ACAtGCt11B.1.617.20.000004
ORF1ab/nsp12572H572DCatGat11B.1.617.20.000004
ORF1ab/nsp12572H572LcAtcTt11B.1.617.20.000004
ORF1ab/nsp12572H572YCatTat11B.1.6210.000089
ORF1ab/nsp12572H572HcaTcaC11B.1.6280.000352
ORF1ab/nsp12572H572HcaTcaC11C.10.002392
ORF1ab/nsp12572H572HcaTcaC11C.160.00106
ORF1ab/nsp12572H572delCAT---11P.1.40.000977
ORF1ab/nsp12572H572HcaTcaC11P.1.70.000319
ORF1ab/nsp12572H572YCatTat11Q.30.000145