CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 562

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12562I562VI4954VnonsynAtcGtc6946920.99711815124-15126
ORF1ab/nsp12562I562VI4954VnonsynAtCGtT69420.0028818415124-15126
ORF1ab/nsp12562I562II4954IsynatCatT5084220.83070915124-15126
ORF1ab/nsp12562I562II4954IsynatCatA508860.16929115124-15126
ORF1ab/nsp12562I562LI4954LnonsynAtcCtc41320.78048815124-15126
ORF1ab/nsp12562I562LI4954LnonsynAtCTtA4160.14634115124-15126
ORF1ab/nsp12562I562LI4954LnonsynAtCTtG4120.048780515124-15126
ORF1ab/nsp12562I562LI4954LnonsynAtCCtT4110.024390215124-15126
ORF1ab/nsp12562I562delI4954deldelATC---1616115124-15126
ORF1ab/nsp12562I562TI4954TnonsynaTcaCc1212115124-15126
ORF1ab/nsp12562I562FI4954FnonsynAtcTtc55115124-15126
ORF1ab/nsp12562I562NI4954NnonsynaTcaAc44115124-15126
ORF1ab/nsp12562I562XI4954XnonsynATCTAG420.515124-15126
ORF1ab/nsp12562I562XI4954XnonsynATCTGA410.2515124-15126
ORF1ab/nsp12562I562XI4954XnonsynATCTAA410.2515124-15126
ORF1ab/nsp12562I562MI4954MnonsynatCatG33115124-15126
ORF1ab/nsp12562I562SI4954SnonsynaTcaGc33115124-15126
ORF1ab/nsp12562I562KI4954KnonsynaTCaAG320.66666715124-15126
ORF1ab/nsp12562I562KI4954KnonsynaTCaAA310.33333315124-15126
ORF1ab/nsp12562I562QI4954QnonsynATCCAG22115124-15126
ORF1ab/nsp12562I562YI4954YnonsynATcTAc22115124-15126
ORF1ab/nsp12562I562RI4954RnonsynaTCaGG210.515124-15126
ORF1ab/nsp12562I562RI4954RnonsynaTCaGA210.515124-15126
ORF1ab/nsp12562I562del1I4954del1delAtc-tc11115124-15126
ORF1ab/nsp12562I562WI4954WnonsynATCTGG11115124-15126
ORF1ab/nsp12562I562CI4954CnonsynATcTGc11115124-15126
ORF1ab/nsp12562I562PI4954PnonsynATcCCc11115124-15126

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12562I562VAtcGtc692694All0.000132
ORF1ab/nsp12562I562VAtCGtT2694All0
ORF1ab/nsp12562I562IatCatT422508All0.000081
ORF1ab/nsp12562I562IatCatA86508All0.000016
ORF1ab/nsp12562I562VAtcGtc326326B.1.617.20.001228
ORF1ab/nsp12562I562IatCatT7790B.1.1.70.000069
ORF1ab/nsp12562I562IatCatA1390B.1.1.70.000012
ORF1ab/nsp12562I562VAtcGtc8686AY.440.000523
ORF1ab/nsp12562I562VAtcGtc4444AY.430.000195
ORF1ab/nsp12562I562LAtcCtc3241All0.000006
ORF1ab/nsp12562I562LAtCTtA641All0.000001
ORF1ab/nsp12562I562LAtCTtG241All0
ORF1ab/nsp12562I562LAtCCtT141All0
ORF1ab/nsp12562I562IatCatA3641P.1.140.001721
ORF1ab/nsp12562I562IatCatT541P.1.140.000239
ORF1ab/nsp12562I562VAtcGtc3838AY.40.000059
ORF1ab/nsp12562I562IatCatT3737B.1.1770.000487
ORF1ab/nsp12562I562IatCatT2727AY.250.000162
ORF1ab/nsp12562I562IatCatT2727B.1.20.000238
ORF1ab/nsp12562I562IatCatT2125AY.40.000033
ORF1ab/nsp12562I562IatCatA425AY.40.000006
ORF1ab/nsp12562I562IatCatT2021B.1.617.20.000075
ORF1ab/nsp12562I562IatCatA121B.1.617.20.000004
ORF1ab/nsp12562I562IatCatT1919A.180.95
ORF1ab/nsp12562I562VAtcGtc1919AY.250.000114
ORF1ab/nsp12562I562IatCatT1618B.10.000147
ORF1ab/nsp12562I562IatCatA218B.10.000018
ORF1ab/nsp12562I562IatCatT1818B.1.1600.000561
ORF1ab/nsp12562I562delATC---1616All0.000003
ORF1ab/nsp12562I562VAtcGtc1515AY.390.000371
ORF1ab/nsp12562I562VAtcGtc1515B.1.10.000272
ORF1ab/nsp12562I562VAtcGtc1313AY.30.000129
ORF1ab/nsp12562I562IatCatT913AY.430.00004
ORF1ab/nsp12562I562IatCatA413AY.430.000018
ORF1ab/nsp12562I562TaTcaCc1212All0.000002
ORF1ab/nsp12562I562VAtcGtc1212AY.1190.000424
ORF1ab/nsp12562I562LAtcCtc1212B.1.2320.006448
ORF1ab/nsp12562I562LAtcCtc1011B.1.1.70.000009
ORF1ab/nsp12562I562LAtCCtT111B.1.1.70.000001
ORF1ab/nsp12562I562VAtcGtc1111P.10.000173
ORF1ab/nsp12562I562VAtcGtc1010AY.450.001217
ORF1ab/nsp12562I562IatCatA710B.1.5250.000792
ORF1ab/nsp12562I562IatCatT310B.1.5250.000339
ORF1ab/nsp12562I562IatCatT89AY.30.00008
ORF1ab/nsp12562I562IatCatA19AY.30.00001
ORF1ab/nsp12562I562IatCatT69AY.440.000037
ORF1ab/nsp12562I562IatCatA39AY.440.000018
ORF1ab/nsp12562I562IatCatT99B.1.1.3160.008326
ORF1ab/nsp12562I562LAtCTtA580.277778
ORF1ab/nsp12562I562LAtCTtG280.111111
ORF1ab/nsp12562I562LAtcCtc180.055556
ORF1ab/nsp12562I562IatCatT88B.1.177.810.001515
ORF1ab/nsp12562I562IatCatT77B.1.10.000127
ORF1ab/nsp12562I562VAtcGtc77B.1.1.70.000006
ORF1ab/nsp12562I562VAtcGtc66AY.1030.000037
ORF1ab/nsp12562I562VAtcGtc66AY.470.000187
ORF1ab/nsp12562I562IatCatT66AY.730.003992
ORF1ab/nsp12562I562VAtcGtc66B.1.20.000053
ORF1ab/nsp12562I562VAtcGtc66B.1.3510.000178
ORF1ab/nsp12562I562IatCatT66P.10.000095
ORF1ab/nsp12562I562FAtcTtc55All0.000001
ORF1ab/nsp12562I562IatCatT45AY.1030.000025
ORF1ab/nsp12562I562IatCatA15AY.1030.000006
ORF1ab/nsp12562I562IatCatT55AY.4.20.000108
ORF1ab/nsp12562I562IatCatT55AY.50.000103
ORF1ab/nsp12562I562VAtcGtc55B.10.000046
ORF1ab/nsp12562I562IatCatT55C.370.00058
ORF1ab/nsp12562I562XATCTAG240.111111
ORF1ab/nsp12562I562XATCTAA140.055556
ORF1ab/nsp12562I562XATCTGA140.055556
ORF1ab/nsp12562I562NaTcaAc44All0.000001
ORF1ab/nsp12562I562XATCTAG24All0
ORF1ab/nsp12562I562XATCTGA14All0
ORF1ab/nsp12562I562XATCTAA14All0
ORF1ab/nsp12562I562VAtcGtc44AY.1100.000451
ORF1ab/nsp12562I562VAtcGtc44AY.200.000155
ORF1ab/nsp12562I562VAtcGtc44AY.4.50.00043
ORF1ab/nsp12562I562IatCatT44B.1.36.170.001976
ORF1ab/nsp12562I562VAtcGtc44B.1.5750.001214
ORF1ab/nsp12562I562KaTCaAG230.111111
ORF1ab/nsp12562I562KaTCaAA130.055556
ORF1ab/nsp12562I562VAtcGtc33A.2.5.30.030928
ORF1ab/nsp12562I562IatCatT33A.210.00831
ORF1ab/nsp12562I562SaTcaGc33All0.000001
ORF1ab/nsp12562I562MatCatG33All0.000001
ORF1ab/nsp12562I562KaTCaAG23All0
ORF1ab/nsp12562I562KaTCaAA13All0
ORF1ab/nsp12562I562IatCatT33AY.1200.000112
ORF1ab/nsp12562I562IatCatT33AY.290.000047
ORF1ab/nsp12562I562VAtcGtc33AY.34.10.00153
ORF1ab/nsp12562I562VAtcGtc33AY.50.000062
ORF1ab/nsp12562I562IatCatA23AY.60.000082
ORF1ab/nsp12562I562IatCatT13AY.60.000041
ORF1ab/nsp12562I562VAtcGtc33AY.980.000237
ORF1ab/nsp12562I562IatCatT33B.1.1.2530.007519
ORF1ab/nsp12562I562IatCatT33B.1.2320.001612
ORF1ab/nsp12562I562IatCatA23B.1.4290.000047
ORF1ab/nsp12562I562IatCatT13B.1.4290.000024
ORF1ab/nsp12562I562MatCatG220.111111
ORF1ab/nsp12562I562NaTcaAc220.111111
ORF1ab/nsp12562I562YATcTAc220.111111
ORF1ab/nsp12562I562QATCCAG220.111111
ORF1ab/nsp12562I562VAtCGtT220.111111
ORF1ab/nsp12562I562FAtcTtc220.111111
ORF1ab/nsp12562I562RaTCaGA120.055556
ORF1ab/nsp12562I562RaTCaGG120.055556
ORF1ab/nsp12562I562IatCatA12A.10.000282
ORF1ab/nsp12562I562IatCatT12A.10.000282
ORF1ab/nsp12562I562IatCatT22A.190.018868
ORF1ab/nsp12562I562QATCCAG22All0
ORF1ab/nsp12562I562YATcTAc22All0
ORF1ab/nsp12562I562RaTCaGG12All0
ORF1ab/nsp12562I562RaTCaGA12All0
ORF1ab/nsp12562I562VAtcGtc22AY.1020.000053
ORF1ab/nsp12562I562IatCatA12AY.200.000039
ORF1ab/nsp12562I562IatCatT12AY.200.000039
ORF1ab/nsp12562I562VAtcGtc22AY.240.000862
ORF1ab/nsp12562I562VAtcGtc22AY.330.000134
ORF1ab/nsp12562I562VAtcGtc22AY.350.000466
ORF1ab/nsp12562I562VAtcGtc22AY.39.10.000079
ORF1ab/nsp12562I562delATC---22AY.40.000003
ORF1ab/nsp12562I562delATC---22AY.430.000009
ORF1ab/nsp12562I562LAtcCtc22AY.450.000243
ORF1ab/nsp12562I562VAtcGtc22AY.460.000208
ORF1ab/nsp12562I562VAtcGtc22AY.550.001835
ORF1ab/nsp12562I562VAtcGtc22AY.860.00166
ORF1ab/nsp12562I562IatCatT22AY.9.2.10.003953
ORF1ab/nsp12562I562IatCatT22AY.98.10.000097
ORF1ab/nsp12562I562TaTcaCc22B.10.000018
ORF1ab/nsp12562I562IatCatT22B.1.1.5190.000079
ORF1ab/nsp12562I562IatCatT22B.1.1.700.000682
ORF1ab/nsp12562I562VAtcGtc22B.1.1770.000026
ORF1ab/nsp12562I562IatCatT22B.1.177.40.000422
ORF1ab/nsp12562I562VAtcGtc22B.1.2060.001631
ORF1ab/nsp12562I562IatCatT22B.1.2210.000142
ORF1ab/nsp12562I562IatCatT22B.1.2580.000133
ORF1ab/nsp12562I562IatCatT22B.1.36.70.008
ORF1ab/nsp12562I562IatCatT12B.1.6120.002653
ORF1ab/nsp12562I562IatCatA12B.1.6120.002653
ORF1ab/nsp12562I562TaTcaCc22D.20.00015
ORF1ab/nsp12562I562delATC---22P.10.000032
ORF1ab/nsp12562I562VAtcGtc22P.1.80.009569
ORF1ab/nsp12562I562IatCatT22R.10.00018
ORF1ab/nsp12562I562CATcTGc110.055556
ORF1ab/nsp12562I562WATCTGG110.055556
ORF1ab/nsp12562I562SaTcaGc110.055556
ORF1ab/nsp12562I562IatCatA110.055556
ORF1ab/nsp12562I562SaTcaGc11A0.000387
ORF1ab/nsp12562I562IatCatT11A0.000387
ORF1ab/nsp12562I562IatCatT11A.2.50.000499
ORF1ab/nsp12562I562PATcCCc11All0
ORF1ab/nsp12562I562del1Atc-tc11All0
ORF1ab/nsp12562I562WATCTGG11All0
ORF1ab/nsp12562I562CATcTGc11All0
ORF1ab/nsp12562I562IatCatT11AY.1020.000027
ORF1ab/nsp12562I562VAtcGtc11AY.1050.000643
ORF1ab/nsp12562I562VAtcGtc11AY.110.001339
ORF1ab/nsp12562I562IatCatT11AY.1100.000113
ORF1ab/nsp12562I562IatCatT11AY.1110.000183
ORF1ab/nsp12562I562TaTcaCc11AY.1130.000142
ORF1ab/nsp12562I562VAtcGtc11AY.1160.000287
ORF1ab/nsp12562I562IatCatT11AY.1190.000035
ORF1ab/nsp12562I562VAtcGtc11AY.16.10.00047
ORF1ab/nsp12562I562delATC---11AY.250.000006
ORF1ab/nsp12562I562VAtcGtc11AY.260.000028
ORF1ab/nsp12562I562FAtcTtc11AY.30.00001
ORF1ab/nsp12562I562IatCatT11AY.340.000097
ORF1ab/nsp12562I562IatCatT11AY.360.000148
ORF1ab/nsp12562I562VAtcGtc11AY.370.000316
ORF1ab/nsp12562I562TaTcaCc11AY.39.10.00004
ORF1ab/nsp12562I562VAtcGtc11AY.4.2.10.000149
ORF1ab/nsp12562I562IatCatA11AY.400.000964
ORF1ab/nsp12562I562IatCatT11AY.420.00004
ORF1ab/nsp12562I562delATC---11AY.420.00004
ORF1ab/nsp12562I562LAtcCtc11AY.430.000004
ORF1ab/nsp12562I562PATcCCc11AY.430.000004
ORF1ab/nsp12562I562TaTcaCc11AY.440.000006
ORF1ab/nsp12562I562delATC---11AY.440.000006
ORF1ab/nsp12562I562LAtcCtc11AY.440.000006
ORF1ab/nsp12562I562IatCatT11AY.46.50.000198
ORF1ab/nsp12562I562IatCatT11AY.470.000031
ORF1ab/nsp12562I562delATC---11AY.590.00053
ORF1ab/nsp12562I562IatCatT11AY.610.000105
ORF1ab/nsp12562I562IatCatA11AY.670.000464
ORF1ab/nsp12562I562VAtcGtc11AY.7.10.000113
ORF1ab/nsp12562I562IatCatA11AY.7.10.000113
ORF1ab/nsp12562I562LAtcCtc11AY.750.000056
ORF1ab/nsp12562I562VAtcGtc11AY.820.001357
ORF1ab/nsp12562I562VAtcGtc11AY.840.000437
ORF1ab/nsp12562I562VAtcGtc11AY.850.000427
ORF1ab/nsp12562I562VAtcGtc11AY.870.000833
ORF1ab/nsp12562I562VAtcGtc11AY.9.20.000037
ORF1ab/nsp12562I562IatCatT11AY.980.000079
ORF1ab/nsp12562I562VAtcGtc11AY.98.10.000048
ORF1ab/nsp12562I562MatCatG11AY.990.001049
ORF1ab/nsp12562I562SaTcaGc11B0.000128
ORF1ab/nsp12562I562LAtCTtA11B.10.000009
ORF1ab/nsp12562I562NaTcaAc11B.10.000009
ORF1ab/nsp12562I562FAtcTtc11B.10.000009
ORF1ab/nsp12562I562LAtcCtc11B.1.10.000018
ORF1ab/nsp12562I562del1Atc-tc11B.1.10.000018
ORF1ab/nsp12562I562LAtcCtc11B.1.1.10.000327
ORF1ab/nsp12562I562delATC---11B.1.1.1390.022727
ORF1ab/nsp12562I562LAtcCtc11B.1.1.2160.00089
ORF1ab/nsp12562I562IatCatT11B.1.1.2220.000204
ORF1ab/nsp12562I562IatCatT11B.1.1.3060.000438
ORF1ab/nsp12562I562VAtcGtc11B.1.1.3160.000925
ORF1ab/nsp12562I562IatCatT11B.1.1.370.000193
ORF1ab/nsp12562I562delATC---11B.1.1.70.000001
ORF1ab/nsp12562I562IatCatT11B.1.1260.001276
ORF1ab/nsp12562I562TaTcaCc11B.1.130.002375
ORF1ab/nsp12562I562TaTcaCc11B.1.1600.000031
ORF1ab/nsp12562I562delATC---11B.1.160.230.004831
ORF1ab/nsp12562I562IatCatT11B.1.177.330.001645
ORF1ab/nsp12562I562delATC---11B.1.177.540.000606
ORF1ab/nsp12562I562delATC---11B.1.177.680.015152
ORF1ab/nsp12562I562IatCatA11B.1.177.730.000566
ORF1ab/nsp12562I562VAtcGtc11B.1.2180.005155
ORF1ab/nsp12562I562TaTcaCc11B.1.2210.000071
ORF1ab/nsp12562I562IatCatT11B.1.2340.000132
ORF1ab/nsp12562I562IatCatT11B.1.2400.000216
ORF1ab/nsp12562I562IatCatT11B.1.3510.00003
ORF1ab/nsp12562I562FAtcTtc11B.1.36.350.002604
ORF1ab/nsp12562I562LAtcCtc11B.1.3620.001541
ORF1ab/nsp12562I562IatCatT11B.1.3900.010638
ORF1ab/nsp12562I562NaTcaAc11B.1.3980.002976
ORF1ab/nsp12562I562IatCatT11B.1.438.10.000107
ORF1ab/nsp12562I562IatCatT11B.1.4990.00105
ORF1ab/nsp12562I562IatCatT11B.1.5600.00463
ORF1ab/nsp12562I562IatCatT11B.1.5750.000303
ORF1ab/nsp12562I562TaTcaCc11B.1.5800.004065
ORF1ab/nsp12562I562IatCatA11B.1.5960.000087
ORF1ab/nsp12562I562TaTcaCc11B.1.617.20.000004
ORF1ab/nsp12562I562IatCatT11B.1.619.10.000641
ORF1ab/nsp12562I562IatCatA11B.1.6360.006711
ORF1ab/nsp12562I562IatCatT11B.470.020408
ORF1ab/nsp12562I562IatCatT11C.10.002392
ORF1ab/nsp12562I562VAtcGtc11C.10.002392
ORF1ab/nsp12562I562delATC---11P.1.40.000977
ORF1ab/nsp12562I562IatCatT11P.60.003145