CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 560

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12560V560VV4952VsyngtCgtT106610000.93808615118-15120
ORF1ab/nsp12560V560VV4952VsyngtCgtA1066540.050656715118-15120
ORF1ab/nsp12560V560VV4952VsyngtCgtG1066120.01125715118-15120
ORF1ab/nsp12560V560delV4952deldelGTC---2424115118-15120
ORF1ab/nsp12560V560AV4952AnonsyngTcgCc1414115118-15120
ORF1ab/nsp12560V560FV4952FnonsynGtcTtc1290.7515118-15120
ORF1ab/nsp12560V560FV4952FnonsynGtCTtT1230.2515118-15120
ORF1ab/nsp12560V560GV4952GnonsyngTcgGc750.71428615118-15120
ORF1ab/nsp12560V560GV4952GnonsyngTCgGG710.14285715118-15120
ORF1ab/nsp12560V560GV4952GnonsyngTCgGT710.14285715118-15120
ORF1ab/nsp12560V560IV4952InonsynGtcAtc540.815118-15120
ORF1ab/nsp12560V560IV4952InonsynGtCAtT510.215118-15120
ORF1ab/nsp12560V560del2V4952del2delGTc--c44115118-15120
ORF1ab/nsp12560V560DV4952DnonsyngTcgAc44115118-15120
ORF1ab/nsp12560V560LV4952LnonsynGtcCtc430.7515118-15120
ORF1ab/nsp12560V560del1V4952del1delGtc-tc430.7515118-15120
ORF1ab/nsp12560V560del1V4952del1delgtCgt-410.2515118-15120
ORF1ab/nsp12560V560LV4952LnonsynGtCTtA410.2515118-15120
ORF1ab/nsp12560V560MV4952MnonsynGtCAtG22115118-15120
ORF1ab/nsp12560V560CV4952CnonsynGTcTGc210.515118-15120
ORF1ab/nsp12560V560EV4952EnonsyngTCgAA210.515118-15120
ORF1ab/nsp12560V560SV4952SnonsynGTcAGc210.515118-15120
ORF1ab/nsp12560V560EV4952EnonsyngTCgAG210.515118-15120
ORF1ab/nsp12560V560CV4952CnonsynGTCTGT210.515118-15120
ORF1ab/nsp12560V560SV4952SnonsynGTcTCc210.515118-15120
ORF1ab/nsp12560V560RV4952RnonsynGTCAGG11115118-15120
ORF1ab/nsp12560V560KV4952KnonsynGTCAAG11115118-15120
ORF1ab/nsp12560V560NV4952NnonsynGTcAAc11115118-15120

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12560V560VgtCgtT10001066All0.000191
ORF1ab/nsp12560V560VgtCgtA541066All0.00001
ORF1ab/nsp12560V560VgtCgtG121066All0.000002
ORF1ab/nsp12560V560VgtCgtT159169B.1.1.70.000142
ORF1ab/nsp12560V560VgtCgtA5169B.1.1.70.000004
ORF1ab/nsp12560V560VgtCgtG5169B.1.1.70.000004
ORF1ab/nsp12560V560VgtCgtT138144AY.40.000215
ORF1ab/nsp12560V560VgtCgtA6144AY.40.000009
ORF1ab/nsp12560V560VgtCgtT121122B.1.617.20.000456
ORF1ab/nsp12560V560VgtCgtG1122B.1.617.20.000004
ORF1ab/nsp12560V560VgtCgtT8686AY.1020.00228
ORF1ab/nsp12560V560VgtCgtT5050N.50.088339
ORF1ab/nsp12560V560VgtCgtT4747B.1.4600.839286
ORF1ab/nsp12560V560VgtCgtT3535AY.430.000155
ORF1ab/nsp12560V560VgtCgtT3233B.1.20.000282
ORF1ab/nsp12560V560VgtCgtA133B.1.20.000009
ORF1ab/nsp12560V560delGTC---2424All0.000005
ORF1ab/nsp12560V560VgtCgtT2424AY.330.001603
ORF1ab/nsp12560V560VgtCgtT2424AY.9.20.000882
ORF1ab/nsp12560V560VgtCgtT1722AY.1030.000106
ORF1ab/nsp12560V560VgtCgtA522AY.1030.000031
ORF1ab/nsp12560V560VgtCgtT2122AY.200.000816
ORF1ab/nsp12560V560VgtCgtA122AY.200.000039
ORF1ab/nsp12560V560VgtCgtT1920AY.250.000114
ORF1ab/nsp12560V560VgtCgtA120AY.250.000006
ORF1ab/nsp12560V560VgtCgtT1818B.1.177.800.034417
ORF1ab/nsp12560V560VgtCgtT1616B.1.1600.000499
ORF1ab/nsp12560V560VgtCgtT1616B.1.4000.006864
ORF1ab/nsp12560V560AgTcgCc1414All0.000003
ORF1ab/nsp12560V560VgtCgtT914B.10.000082
ORF1ab/nsp12560V560VgtCgtA514B.10.000046
ORF1ab/nsp12560V560FGtcTtc912All0.000002
ORF1ab/nsp12560V560FGtCTtT312All0.000001
ORF1ab/nsp12560V560VgtCgtT910AY.440.000055
ORF1ab/nsp12560V560VgtCgtA110AY.440.000006
ORF1ab/nsp12560V560VgtCgtT99AY.30.00009
ORF1ab/nsp12560V560VgtCgtT99AY.46.40.001481
ORF1ab/nsp12560V560VgtCgtT59P.10.000079
ORF1ab/nsp12560V560VgtCgtA49P.10.000063
ORF1ab/nsp12560V560VgtCgtT99Q.10.001137
ORF1ab/nsp12560V560VgtCgtT88B.1.4290.000188
ORF1ab/nsp12560V560GgTcgGc57All0.000001
ORF1ab/nsp12560V560GgTCgGG17All0
ORF1ab/nsp12560V560GgTCgGT17All0
ORF1ab/nsp12560V560VgtCgtT77AY.780.010786
ORF1ab/nsp12560V560VgtCgtA77B.1.4280.007143
ORF1ab/nsp12560V560VgtCgtT560.277778
ORF1ab/nsp12560V560FGtCTtT360.166667
ORF1ab/nsp12560V560FGtcTtc360.166667
ORF1ab/nsp12560V560VgtCgtG160.055556
ORF1ab/nsp12560V560VgtCgtT66B.1.1.5190.000238
ORF1ab/nsp12560V560VgtCgtT66B.1.1770.000079
ORF1ab/nsp12560V560GgTcgGc350.166667
ORF1ab/nsp12560V560GgTCgGT150.055556
ORF1ab/nsp12560V560GgTCgGG150.055556
ORF1ab/nsp12560V560IGtcAtc45All0.000001
ORF1ab/nsp12560V560IGtCAtT15All0
ORF1ab/nsp12560V560VgtCgtT55AY.3.10.000426
ORF1ab/nsp12560V560VgtCgtT55AY.470.000156
ORF1ab/nsp12560V560VgtCgtT55AY.98.10.000242
ORF1ab/nsp12560V560VgtCgtT55B.1.10.000091
ORF1ab/nsp12560V560VgtCgtG55B.1.5250.000566
ORF1ab/nsp12560V560del2GTc--c44All0.000001
ORF1ab/nsp12560V560DgTcgAc44All0.000001
ORF1ab/nsp12560V560del1Gtc-tc34All0.000001
ORF1ab/nsp12560V560LGtcCtc34All0.000001
ORF1ab/nsp12560V560del1gtCgt-14All0
ORF1ab/nsp12560V560LGtCTtA14All0
ORF1ab/nsp12560V560VgtCgtT44AY.260.000113
ORF1ab/nsp12560V560VgtCgtT44AY.50.000083
ORF1ab/nsp12560V560VgtCgtA34AY.610.000314
ORF1ab/nsp12560V560VgtCgtT14AY.610.000105
ORF1ab/nsp12560V560del2GTc--c44B.1.1.70.000004
ORF1ab/nsp12560V560delGTC---44B.1.1.70.000004
ORF1ab/nsp12560V560VgtCgtT24B.1.3510.000059
ORF1ab/nsp12560V560VgtCgtA24B.1.3510.000059
ORF1ab/nsp12560V560VgtCgtT33AY.1160.00086
ORF1ab/nsp12560V560VgtCgtT33AY.1210.000406
ORF1ab/nsp12560V560VgtCgtA23AY.390.000049
ORF1ab/nsp12560V560VgtCgtT13AY.390.000025
ORF1ab/nsp12560V560VgtCgtT33AY.4.20.000065
ORF1ab/nsp12560V560delGTC---33AY.430.000013
ORF1ab/nsp12560V560AgTcgCc33B.10.000027
ORF1ab/nsp12560V560VgtCgtT33B.1.1.2140.000166
ORF1ab/nsp12560V560AgTcgCc33B.1.1.70.000003
ORF1ab/nsp12560V560VgtCgtT33B.1.2430.000209
ORF1ab/nsp12560V560VgtCgtT33B.1.360.000438
ORF1ab/nsp12560V560VgtCgtT33B.1.36.170.001482
ORF1ab/nsp12560V560DgTcgAc220.111111
ORF1ab/nsp12560V560CGTCTGT120.055556
ORF1ab/nsp12560V560CGTcTGc120.055556
ORF1ab/nsp12560V560IGtcAtc12A.2.40.003367
ORF1ab/nsp12560V560IGtCAtT12A.2.40.003367
ORF1ab/nsp12560V560MGtCAtG22All0
ORF1ab/nsp12560V560EgTCgAA12All0
ORF1ab/nsp12560V560EgTCgAG12All0
ORF1ab/nsp12560V560CGTCTGT12All0
ORF1ab/nsp12560V560CGTcTGc12All0
ORF1ab/nsp12560V560SGTcTCc12All0
ORF1ab/nsp12560V560SGTcAGc12All0
ORF1ab/nsp12560V560delGTC---22AY.250.000012
ORF1ab/nsp12560V560VgtCgtA22AY.290.000032
ORF1ab/nsp12560V560AgTcgCc22AY.30.00002
ORF1ab/nsp12560V560VgtCgtT22AY.380.000999
ORF1ab/nsp12560V560delGTC---22AY.40.000003
ORF1ab/nsp12560V560VgtCgtT22AY.460.000208
ORF1ab/nsp12560V560VgtCgtA22AY.99.20.000184
ORF1ab/nsp12560V560FGtcTtc22B.10.000018
ORF1ab/nsp12560V560FGtcTtc22B.1.20.000018
ORF1ab/nsp12560V560VgtCgtT22B.1.5260.000047
ORF1ab/nsp12560V560VgtCgtT22B.1.5610.000794
ORF1ab/nsp12560V560VgtCgtA12D.20.000075
ORF1ab/nsp12560V560VgtCgtT12D.20.000075
ORF1ab/nsp12560V560delGTC---22P.10.000032
ORF1ab/nsp12560V560SGTcAGc110.055556
ORF1ab/nsp12560V560RGTCAGG110.055556
ORF1ab/nsp12560V560KGTCAAG110.055556
ORF1ab/nsp12560V560MGtCAtG110.055556
ORF1ab/nsp12560V560EgTCgAG110.055556
ORF1ab/nsp12560V560IGtcAtc110.055556
ORF1ab/nsp12560V560NGTcAAc110.055556
ORF1ab/nsp12560V560VgtCgtT11A.2.40.003367
ORF1ab/nsp12560V560FGtcTtc11A.2.40.003367
ORF1ab/nsp12560V560VgtCgtT11A.2.5.20.001572
ORF1ab/nsp12560V560VgtCgtT11A.50.001923
ORF1ab/nsp12560V560NGTcAAc11All0
ORF1ab/nsp12560V560KGTCAAG11All0
ORF1ab/nsp12560V560RGTCAGG11All0
ORF1ab/nsp12560V560VgtCgtT11AY.1000.000046
ORF1ab/nsp12560V560VgtCgtA11AY.1110.000183
ORF1ab/nsp12560V560VgtCgtT11AY.1180.000063
ORF1ab/nsp12560V560VgtCgtT11AY.1190.000035
ORF1ab/nsp12560V560VgtCgtT11AY.1200.000037
ORF1ab/nsp12560V560VgtCgtT11AY.20.000356
ORF1ab/nsp12560V560SGTcTCc11AY.250.000006
ORF1ab/nsp12560V560del1Gtc-tc11AY.250.000006
ORF1ab/nsp12560V560del1Gtc-tc11AY.30.00001
ORF1ab/nsp12560V560VgtCgtT11AY.340.000097
ORF1ab/nsp12560V560AgTcgCc11AY.390.000025
ORF1ab/nsp12560V560VgtCgtT11AY.4.50.000107
ORF1ab/nsp12560V560delGTC---11AY.420.00004
ORF1ab/nsp12560V560IGtcAtc11AY.430.000004
ORF1ab/nsp12560V560AgTcgCc11AY.440.000006
ORF1ab/nsp12560V560delGTC---11AY.440.000006
ORF1ab/nsp12560V560VgtCgtA11AY.5.40.000277
ORF1ab/nsp12560V560VgtCgtT11AY.560.001605
ORF1ab/nsp12560V560delGTC---11AY.590.00053
ORF1ab/nsp12560V560VgtCgtT11AY.60.000041
ORF1ab/nsp12560V560VgtCgtA11AY.660.00107
ORF1ab/nsp12560V560MGtCAtG11AY.670.000464
ORF1ab/nsp12560V560VgtCgtT11AY.740.000116
ORF1ab/nsp12560V560VgtCgtT11AY.750.000056
ORF1ab/nsp12560V560VgtCgtT11AY.790.001211
ORF1ab/nsp12560V560delGTC---11AY.840.000437
ORF1ab/nsp12560V560VgtCgtA11AY.920.000287
ORF1ab/nsp12560V560LGtcCtc11B.10.000009
ORF1ab/nsp12560V560GgTcgGc11B.10.000009
ORF1ab/nsp12560V560LGtCTtA11B.1.10.000018
ORF1ab/nsp12560V560delGTC---11B.1.10.000018
ORF1ab/nsp12560V560VgtCgtT11B.1.1.1010.01
ORF1ab/nsp12560V560delGTC---11B.1.1.1390.022727
ORF1ab/nsp12560V560VgtCgtT11B.1.1.2650.003155
ORF1ab/nsp12560V560VgtCgtT11B.1.1.3040.002809
ORF1ab/nsp12560V560del1Gtc-tc11B.1.1.70.000001
ORF1ab/nsp12560V560DgTcgAc11B.1.1.70.000001
ORF1ab/nsp12560V560VgtCgtT11B.1.1490.003425
ORF1ab/nsp12560V560delGTC---11B.1.160.230.004831
ORF1ab/nsp12560V560delGTC---11B.1.177.540.000606
ORF1ab/nsp12560V560delGTC---11B.1.177.680.015152
ORF1ab/nsp12560V560AgTcgCc11B.1.177.730.000566
ORF1ab/nsp12560V560LGtcCtc11B.1.20.000009
ORF1ab/nsp12560V560AgTcgCc11B.1.20.000009
ORF1ab/nsp12560V560VgtCgtT11B.1.2410.000812
ORF1ab/nsp12560V560VgtCgtA11B.1.2580.000067
ORF1ab/nsp12560V560VgtCgtA11B.1.258.170.000104
ORF1ab/nsp12560V560VgtCgtT11B.1.258.50.008772
ORF1ab/nsp12560V560VgtCgtT11B.1.2980.002114
ORF1ab/nsp12560V560VgtCgtT11B.1.3690.000285
ORF1ab/nsp12560V560EgTCgAA11B.1.4160.001269
ORF1ab/nsp12560V560AgTcgCc11B.1.4270.00005
ORF1ab/nsp12560V560VgtCgtT11B.1.4360.001029
ORF1ab/nsp12560V560VgtCgtT11B.1.438.10.000107
ORF1ab/nsp12560V560VgtCgtT11B.1.466.20.000391
ORF1ab/nsp12560V560VgtCgtT11B.1.5580.004566
ORF1ab/nsp12560V560VgtCgtT11B.1.5760.000907
ORF1ab/nsp12560V560IGtcAtc11B.1.5960.000087
ORF1ab/nsp12560V560GgTcgGc11B.1.617.20.000004
ORF1ab/nsp12560V560del1gtCgt-11B.1.617.20.000004
ORF1ab/nsp12560V560FGtcTtc11B.1.617.20.000004
ORF1ab/nsp12560V560VgtCgtT11B.30.000831
ORF1ab/nsp12560V560DgTcgAc11B.40.002208
ORF1ab/nsp12560V560VgtCgtT11B.60.00091
ORF1ab/nsp12560V560VgtCgtT11B.600.015873
ORF1ab/nsp12560V560AgTcgCc11C.350.000774
ORF1ab/nsp12560V560LGtcCtc11P.10.000016
ORF1ab/nsp12560V560delGTC---11P.1.40.000977
ORF1ab/nsp12560V560delGTC---11Q.20.000613
ORF1ab/nsp12560V560VgtCgtT11Q.80.000165
ORF1ab/nsp12560V560VgtCgtT11W.40.001351