CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 558

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12558A558AA4950AsyngcTgcC231120250.87624415112-15114
ORF1ab/nsp12558A558AA4950AsyngcTgcA23112620.11337115112-15114
ORF1ab/nsp12558A558AA4950AsyngcTgcG2311240.010385115112-15114
ORF1ab/nsp12558A558SA4950SnonsynGctTct82730.89024415112-15114
ORF1ab/nsp12558A558SA4950SnonsynGCtAGt8230.036585415112-15114
ORF1ab/nsp12558A558SA4950SnonsynGcTTcC8220.024390215112-15114
ORF1ab/nsp12558A558SA4950SnonsynGCTAGC8220.024390215112-15114
ORF1ab/nsp12558A558SA4950SnonsynGcTTcA8210.012195115112-15114
ORF1ab/nsp12558A558SA4950SnonsynGcTTcG8210.012195115112-15114
ORF1ab/nsp12558A558del1A4950del1delGct-ct81800.98765415112-15114
ORF1ab/nsp12558A558del1A4950del1delgCtg-t8110.012345715112-15114
ORF1ab/nsp12558A558delA4950deldelGCT---3535115112-15114
ORF1ab/nsp12558A558VA4950VnonsyngCtgTt25240.9615112-15114
ORF1ab/nsp12558A558VA4950VnonsyngCTgTC2510.0415112-15114
ORF1ab/nsp12558A558TA4950TnonsynGctAct1070.715112-15114
ORF1ab/nsp12558A558TA4950TnonsynGcTAcC1020.215112-15114
ORF1ab/nsp12558A558TA4950TnonsynGcTAcA1010.115112-15114
ORF1ab/nsp12558A558GA4950GnonsyngCtgGt850.62515112-15114
ORF1ab/nsp12558A558GA4950GnonsyngCTgGC830.37515112-15114
ORF1ab/nsp12558A558FA4950FnonsynGCtTTt44115112-15114
ORF1ab/nsp12558A558PA4950PnonsynGctCct44115112-15114
ORF1ab/nsp12558A558CA4950CnonsynGCtTGt420.515112-15114
ORF1ab/nsp12558A558CA4950CnonsynGCTTGC420.515112-15114
ORF1ab/nsp12558A558DA4950DnonsyngCtgAt33115112-15114
ORF1ab/nsp12558A558IA4950InonsynGCtATt11115112-15114
ORF1ab/nsp12558A558YA4950YnonsynGCtTAt11115112-15114
ORF1ab/nsp12558A558HA4950HnonsynGCtCAt11115112-15114

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12558A558AgcTgcC20252311All0.000387
ORF1ab/nsp12558A558AgcTgcA2622311All0.00005
ORF1ab/nsp12558A558AgcTgcG242311All0.000005
ORF1ab/nsp12558A558AgcTgcC10361036AY.30.010304
ORF1ab/nsp12558A558AgcTgcC697697B.1.1.4330.992877
ORF1ab/nsp12558A558AgcTgcA180194B.1.1.70.000161
ORF1ab/nsp12558A558AgcTgcC9194B.1.1.70.000008
ORF1ab/nsp12558A558AgcTgcG5194B.1.1.70.000004
ORF1ab/nsp12558A558SGctTct7382All0.000014
ORF1ab/nsp12558A558SGCtAGt382All0.000001
ORF1ab/nsp12558A558SGcTTcC282All0
ORF1ab/nsp12558A558SGCTAGC282All0
ORF1ab/nsp12558A558SGcTTcG182All0
ORF1ab/nsp12558A558SGcTTcA182All0
ORF1ab/nsp12558A558del1Gct-ct8081All0.000015
ORF1ab/nsp12558A558del1gCtg-t181All0
ORF1ab/nsp12558A558AgcTgcC6166AY.40.000095
ORF1ab/nsp12558A558AgcTgcG366AY.40.000005
ORF1ab/nsp12558A558AgcTgcA266AY.40.000003
ORF1ab/nsp12558A558del1Gct-ct6666B.1.1.70.000059
ORF1ab/nsp12558A558AgcTgcA5252AZ.10.0451
ORF1ab/nsp12558A558delGCT---3535All0.000007
ORF1ab/nsp12558A558AgcTgcC2828AY.430.000124
ORF1ab/nsp12558A558AgcTgcC2628B.1.617.20.000098
ORF1ab/nsp12558A558AgcTgcA228B.1.617.20.000008
ORF1ab/nsp12558A558VgCtgTt2425All0.000005
ORF1ab/nsp12558A558VgCTgTC125All0
ORF1ab/nsp12558A558AgcTgcC1920B.1.10.000345
ORF1ab/nsp12558A558AgcTgcA120B.1.10.000018
ORF1ab/nsp12558A558AgcTgcC1717B.1.2580.001131
ORF1ab/nsp12558A558AgcTgcG1315B.1.1770.000171
ORF1ab/nsp12558A558AgcTgcC215B.1.1770.000026
ORF1ab/nsp12558A558AgcTgcC1315B.1.20.000114
ORF1ab/nsp12558A558AgcTgcA215B.1.20.000018
ORF1ab/nsp12558A558AgcTgcC1212AY.1170.001014
ORF1ab/nsp12558A558TGctAct710All0.000001
ORF1ab/nsp12558A558TGcTAcC210All0
ORF1ab/nsp12558A558TGcTAcA110All0
ORF1ab/nsp12558A558SGctTct1010AY.40.000016
ORF1ab/nsp12558A558AgcTgcC1010AY.440.000061
ORF1ab/nsp12558A558delGCT---1010B.1.1.70.000009
ORF1ab/nsp12558A558SGCtAGt390.166667
ORF1ab/nsp12558A558SGCTAGC290.111111
ORF1ab/nsp12558A558SGctTct290.111111
ORF1ab/nsp12558A558SGcTTcC290.111111
ORF1ab/nsp12558A558AgcTgcC99AY.250.000054
ORF1ab/nsp12558A558AgcTgcC99B.1.2340.001187
ORF1ab/nsp12558A558AgcTgcA89B.1.5250.000905
ORF1ab/nsp12558A558AgcTgcG19B.1.5250.000113
ORF1ab/nsp12558A558GgCtgGt58All0.000001
ORF1ab/nsp12558A558GgCTgGC38All0.000001
ORF1ab/nsp12558A558AgcTgcC68B.10.000055
ORF1ab/nsp12558A558AgcTgcA28B.10.000018
ORF1ab/nsp12558A558SGctTct77B.1.1.70.000006
ORF1ab/nsp12558A558AgcTgcC56AY.390.000124
ORF1ab/nsp12558A558AgcTgcG16AY.390.000025
ORF1ab/nsp12558A558SGctTct66AY.430.000027
ORF1ab/nsp12558A558VgCtgTt66D.20.00045
ORF1ab/nsp12558A558GgCtgGt350.166667
ORF1ab/nsp12558A558TGctAct350.166667
ORF1ab/nsp12558A558GgCTgGC250.111111
ORF1ab/nsp12558A558TGcTAcC250.111111
ORF1ab/nsp12558A558delGCT---55AY.250.00003
ORF1ab/nsp12558A558AgcTgcC55P.1.140.000239
ORF1ab/nsp12558A558FGCtTTt440.222222
ORF1ab/nsp12558A558CGCTTGC240.111111
ORF1ab/nsp12558A558CGCtTGt240.111111
ORF1ab/nsp12558A558PGctCct44All0.000001
ORF1ab/nsp12558A558FGCtTTt44All0.000001
ORF1ab/nsp12558A558CGCTTGC24All0
ORF1ab/nsp12558A558CGCtTGt24All0
ORF1ab/nsp12558A558AgcTgcC44AY.1030.000025
ORF1ab/nsp12558A558SGctTct44AY.1210.000541
ORF1ab/nsp12558A558SGctTct44B.1.617.20.000015
ORF1ab/nsp12558A558VgCtgTt330.166667
ORF1ab/nsp12558A558DgCtgAt33All0.000001
ORF1ab/nsp12558A558AgcTgcC33AY.1000.000138
ORF1ab/nsp12558A558AgcTgcC33AY.20.001068
ORF1ab/nsp12558A558SGctTct33AY.250.000018
ORF1ab/nsp12558A558delGCT---33AY.430.000013
ORF1ab/nsp12558A558AgcTgcA23AY.470.000062
ORF1ab/nsp12558A558AgcTgcC13AY.470.000031
ORF1ab/nsp12558A558AgcTgcC33AY.50.000062
ORF1ab/nsp12558A558VgCtgTt33B.10.000027
ORF1ab/nsp12558A558SGctTct33B.10.000027
ORF1ab/nsp12558A558VgCtgTt33B.1.10.000054
ORF1ab/nsp12558A558AgcTgcC33B.1.1.1890.004539
ORF1ab/nsp12558A558del1Gct-ct33B.1.177.820.001432
ORF1ab/nsp12558A558del1Gct-ct33B.1.3510.000089
ORF1ab/nsp12558A558AgcTgcC220.111111
ORF1ab/nsp12558A558AgcTgcC22AY.1020.000053
ORF1ab/nsp12558A558AgcTgcC22AY.1190.000071
ORF1ab/nsp12558A558SGctTct22AY.30.00002
ORF1ab/nsp12558A558delGCT---22AY.40.000003
ORF1ab/nsp12558A558SGctTct22AY.4.20.000043
ORF1ab/nsp12558A558AgcTgcC22AY.420.00008
ORF1ab/nsp12558A558SGctTct22AY.440.000012
ORF1ab/nsp12558A558SGctTct22AY.470.000062
ORF1ab/nsp12558A558AgcTgcA12AY.5.30.000337
ORF1ab/nsp12558A558AgcTgcC12AY.5.30.000337
ORF1ab/nsp12558A558del1Gct-ct22AY.520.001629
ORF1ab/nsp12558A558AgcTgcC22AY.75.10.000361
ORF1ab/nsp12558A558AgcTgcA22AY.99.20.000184
ORF1ab/nsp12558A558AgcTgcC22B.1.1.3060.000877
ORF1ab/nsp12558A558AgcTgcC22B.1.1.390.001019
ORF1ab/nsp12558A558del1Gct-ct22B.1.1600.000062
ORF1ab/nsp12558A558AgcTgcC22B.1.160.320.008584
ORF1ab/nsp12558A558AgcTgcC22B.1.3510.000059
ORF1ab/nsp12558A558AgcTgcA22B.1.5960.000174
ORF1ab/nsp12558A558delGCT---22P.10.000032
ORF1ab/nsp12558A558IGCtATt110.055556
ORF1ab/nsp12558A558SGctTct11A0.000387
ORF1ab/nsp12558A558SGctTct11A.2.50.000499
ORF1ab/nsp12558A558HGCtCAt11All0
ORF1ab/nsp12558A558IGCtATt11All0
ORF1ab/nsp12558A558YGCtTAt11All0
ORF1ab/nsp12558A558SGctTct11AY.100.00053
ORF1ab/nsp12558A558AgcTgcC11AY.1010.00049
ORF1ab/nsp12558A558SGctTct11AY.1020.000027
ORF1ab/nsp12558A558SGctTct11AY.1030.000006
ORF1ab/nsp12558A558VgCtgTt11AY.1030.000006
ORF1ab/nsp12558A558SGctTct11AY.1180.000063
ORF1ab/nsp12558A558AgcTgcC11AY.1180.000063
ORF1ab/nsp12558A558AgcTgcA11AY.160.00038
ORF1ab/nsp12558A558VgCtgTt11AY.200.000039
ORF1ab/nsp12558A558HGCtCAt11AY.250.000006
ORF1ab/nsp12558A558SGctTct11AY.290.000016
ORF1ab/nsp12558A558AgcTgcC11AY.29.10.000221
ORF1ab/nsp12558A558delGCT---11AY.30.00001
ORF1ab/nsp12558A558DgCtgAt11AY.30.00001
ORF1ab/nsp12558A558SGctTct11AY.330.000067
ORF1ab/nsp12558A558SGctTct11AY.390.000025
ORF1ab/nsp12558A558VgCtgTt11AY.390.000025
ORF1ab/nsp12558A558AgcTgcC11AY.39.10.00004
ORF1ab/nsp12558A558VgCTgTC11AY.40.000002
ORF1ab/nsp12558A558AgcTgcC11AY.4.20.000022
ORF1ab/nsp12558A558delGCT---11AY.420.00004
ORF1ab/nsp12558A558YGCtTAt11AY.440.000006
ORF1ab/nsp12558A558SGctTct11AY.460.000104
ORF1ab/nsp12558A558SGctTct11AY.50.000021
ORF1ab/nsp12558A558AgcTgcC11AY.550.000917
ORF1ab/nsp12558A558delGCT---11AY.590.00053
ORF1ab/nsp12558A558SGctTct11AY.60.000041
ORF1ab/nsp12558A558delGCT---11AY.650.000533
ORF1ab/nsp12558A558SGcTTcG11AY.670.000464
ORF1ab/nsp12558A558AgcTgcC11AY.710.000475
ORF1ab/nsp12558A558AgcTgcC11AY.770.001127
ORF1ab/nsp12558A558AgcTgcC11AY.790.001211
ORF1ab/nsp12558A558SGctTct11AY.840.000437
ORF1ab/nsp12558A558delGCT---11AY.840.000437
ORF1ab/nsp12558A558AgcTgcC11AY.9.20.000037
ORF1ab/nsp12558A558AgcTgcC11AY.910.00073
ORF1ab/nsp12558A558DgCtgAt11AY.920.000287
ORF1ab/nsp12558A558SGctTct11AY.980.000079
ORF1ab/nsp12558A558AgcTgcC11AY.98.10.000048
ORF1ab/nsp12558A558GgCTgGC11AY.990.001049
ORF1ab/nsp12558A558AgcTgcA11B0.000128
ORF1ab/nsp12558A558TGctAct11B.10.000009
ORF1ab/nsp12558A558DgCtgAt11B.10.000009
ORF1ab/nsp12558A558delGCT---11B.1.10.000018
ORF1ab/nsp12558A558SGctTct11B.1.1.10.000327
ORF1ab/nsp12558A558AgcTgcG11B.1.1.1300.015385
ORF1ab/nsp12558A558delGCT---11B.1.1.1390.022727
ORF1ab/nsp12558A558SGctTct11B.1.1.170.016667
ORF1ab/nsp12558A558SGctTct11B.1.1.1890.001513
ORF1ab/nsp12558A558VgCtgTt11B.1.1.250.000569
ORF1ab/nsp12558A558TGctAct11B.1.1.3720.000689
ORF1ab/nsp12558A558SGctTct11B.1.1.3740.002375
ORF1ab/nsp12558A558SGctTct11B.1.1.4090.002833
ORF1ab/nsp12558A558AgcTgcC11B.1.1.4150.05
ORF1ab/nsp12558A558SGctTct11B.1.1.5190.00004
ORF1ab/nsp12558A558VgCtgTt11B.1.1.70.000001
ORF1ab/nsp12558A558GgCtgGt11B.1.1.70.000001
ORF1ab/nsp12558A558PGctCct11B.1.1.70.000001
ORF1ab/nsp12558A558AgcTgcC11B.1.1.700.000341
ORF1ab/nsp12558A558VgCtgTt11B.1.160.160.000929
ORF1ab/nsp12558A558delGCT---11B.1.160.230.004831
ORF1ab/nsp12558A558TGctAct11B.1.1770.000013
ORF1ab/nsp12558A558del1Gct-ct11B.1.177.120.000152
ORF1ab/nsp12558A558AgcTgcC11B.1.177.120.000152
ORF1ab/nsp12558A558delGCT---11B.1.177.540.000606
ORF1ab/nsp12558A558del1Gct-ct11B.1.177.60.000977
ORF1ab/nsp12558A558delGCT---11B.1.177.680.015152
ORF1ab/nsp12558A558PGctCct11B.1.177.730.000566
ORF1ab/nsp12558A558VgCtgTt11B.1.177.90.001332
ORF1ab/nsp12558A558delGCT---11B.1.20.000009
ORF1ab/nsp12558A558PGctCct11B.1.20.000009
ORF1ab/nsp12558A558SGcTTcA11B.1.20.000009
ORF1ab/nsp12558A558AgcTgcC11B.1.2210.000071
ORF1ab/nsp12558A558VgCtgTt11B.1.2430.00007
ORF1ab/nsp12558A558SGctTct11B.1.2430.00007
ORF1ab/nsp12558A558SGctTct11B.1.3510.00003
ORF1ab/nsp12558A558SGctTct11B.1.360.000146
ORF1ab/nsp12558A558del1Gct-ct11B.1.36.10.00114
ORF1ab/nsp12558A558PGctCct11B.1.36.360.000602
ORF1ab/nsp12558A558TGcTAcA11B.1.4160.001269
ORF1ab/nsp12558A558AgcTgcA11B.1.4160.001269
ORF1ab/nsp12558A558AgcTgcC11B.1.4290.000024
ORF1ab/nsp12558A558GgCtgGt11B.1.438.10.000107
ORF1ab/nsp12558A558AgcTgcA11B.1.4620.007246
ORF1ab/nsp12558A558AgcTgcC11B.1.5170.000427
ORF1ab/nsp12558A558SGctTct11B.1.5230.002451
ORF1ab/nsp12558A558AgcTgcC11B.1.5260.000024
ORF1ab/nsp12558A558AgcTgcC11B.1.5820.000491
ORF1ab/nsp12558A558AgcTgcC11B.1.5990.00365
ORF1ab/nsp12558A558AgcTgcC11B.1.617.10.000129
ORF1ab/nsp12558A558SGctTct11B.1.617.10.000129
ORF1ab/nsp12558A558VgCtgTt11B.1.617.20.000004
ORF1ab/nsp12558A558TGctAct11B.1.6250.002353
ORF1ab/nsp12558A558AgcTgcC11B.1.6280.000352
ORF1ab/nsp12558A558AgcTgcA11B.1.6360.006711
ORF1ab/nsp12558A558SGctTct11B.340.013699
ORF1ab/nsp12558A558AgcTgcC11P.10.000016
ORF1ab/nsp12558A558AgcTgcC11P.1.100.000269
ORF1ab/nsp12558A558del1gCtg-t11P.1.10.10.00813
ORF1ab/nsp12558A558delGCT---11P.1.40.000977
ORF1ab/nsp12558A558AgcTgcA11P.1.70.000319
ORF1ab/nsp12558A558delGCT---11Q.20.000613
ORF1ab/nsp12558A558del1Gct-ct11R.10.00009