CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 552 | N552N | N4944N | syn | aaT | aaC | 228744 | 228744 | 1 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552del | N4944del | del | AAT | --- | 23 | 23 | 1 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552K | N4944K | nonsyn | aaT | aaA | 18 | 13 | 0.722222 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552K | N4944K | nonsyn | aaT | aaG | 18 | 5 | 0.277778 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552D | N4944D | nonsyn | Aat | Gat | 14 | 14 | 1 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552V | N4944V | nonsyn | AAt | GTt | 7 | 7 | 1 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552T | N4944T | nonsyn | aAt | aCt | 5 | 5 | 1 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552del1 | N4944del1 | del | aaT | aa- | 4 | 3 | 0.75 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552I | N4944I | nonsyn | aAt | aTt | 4 | 3 | 0.75 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552I | N4944I | nonsyn | aAT | aTC | 4 | 1 | 0.25 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552del1 | N4944del1 | del | AaT | -aC | 4 | 1 | 0.25 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552H | N4944H | nonsyn | Aat | Cat | 3 | 3 | 1 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552Y | N4944Y | nonsyn | Aat | Tat | 3 | 3 | 1 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552S | N4944S | nonsyn | aAt | aGt | 2 | 2 | 1 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552C | N4944C | nonsyn | AAt | TGt | 1 | 1 | 1 | 15094-15096 |
ORF1ab/nsp12 | 552 | N552L | N4944L | nonsyn | AAT | CTG | 1 | 1 | 1 | 15094-15096 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 228744 | 228744 | All | 0.04375 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 225381 | 225381 | B.1.1.7 | 0.201766 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 891 | 891 | Q.8 | 0.146933 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 881 | 881 | Q.7 | 0.978889 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 260 | 260 | B.1.1 | 0.004717 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 255 | 255 | Q.1 | 0.032213 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 169 | 169 | B.1 | 0.001548 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 148 | 148 | B.1.351 | 0.0044 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 146 | 146 | Q.6 | 0.966887 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 144 | 144 | AY.4 | 0.000224 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 44 | 44 | AY.3 | 0.000438 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 29 | 29 | B.1.351.2 | 0.008775 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 28 | 28 | B.1.375 | 0.022951 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 27 | 27 | B.1.177 | 0.000356 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 26 | 26 | B.1.177.60 | 0.005679 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 24 | 24 | B.1.177.73 | 0.01359 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 23 | 23 | All | 0.000004 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 13 | 18 | All | 0.000002 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaG | 5 | 18 | All | 0.000001 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 16 | 16 | AY.34.1 | 0.008159 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 14 | 14 | All | 0.000003 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 12 | 12 | B.1.576 | 0.010879 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 8 | 8 | Q.4 | 0.003638 |
ORF1ab/nsp12 | 552 | N552V | AAt | GTt | 7 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 7 | 7 | B | 0.000895 |
ORF1ab/nsp12 | 552 | N552V | AAt | GTt | 6 | 6 | 0.333333 | |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 6 | 6 | B.1.177.7 | 0.000989 |
ORF1ab/nsp12 | 552 | N552T | aAt | aCt | 5 | 5 | All | 0.000001 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 5 | 5 | B.1.1.409 | 0.014164 |
ORF1ab/nsp12 | 552 | N552T | aAt | aCt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 5 | 5 | C.36.3 | 0.002836 |
ORF1ab/nsp12 | 552 | N552del1 | aaT | aa- | 3 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 552 | N552I | aAt | aTt | 3 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 552 | N552I | aAT | aTC | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 552 | N552del1 | AaT | -aC | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | 0.166667 | |
ORF1ab/nsp12 | 552 | N552Y | Aat | Tat | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 552 | N552H | Aat | Cat | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaG | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | B.1.1.205 | 0.011152 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | B.1.177.31 | 0.034483 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 3 | 3 | Q.5 | 0.050847 |
ORF1ab/nsp12 | 552 | N552Y | Aat | Tat | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | A | 0.000774 |
ORF1ab/nsp12 | 552 | N552S | aAt | aGt | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.1.299 | 0.02439 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 552 | N552H | Aat | Cat | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 552 | N552L | AAT | CTG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 552 | N552C | AAt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 552 | N552S | aAt | aGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 552 | N552del1 | aaT | aa- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 552 | N552I | aAT | aTC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 552 | N552C | AAt | TGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 552 | N552I | aAt | aTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 552 | N552del1 | aaT | aa- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 552 | N552H | Aat | Cat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 552 | N552V | AAt | GTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.1.187 | 0.00885 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.1.43 | 0.014925 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 552 | N552I | aAt | aTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 552 | N552H | Aat | Cat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp12 | 552 | N552S | aAt | aGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 552 | N552D | Aat | Gat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp12 | 552 | N552I | aAt | aTt | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp12 | 552 | N552Y | Aat | Tat | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp12 | 552 | N552del1 | AaT | -aC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp12 | 552 | N552del1 | aaT | aa- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 552 | N552L | AAT | CTG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp12 | 552 | N552K | aaT | aaG | 1 | 1 | C.29 | 0.0625 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 552 | N552del | AAT | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp12 | 552 | N552N | aaT | aaC | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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