CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 552

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12552N552NN4944NsynaaTaaC228744228744115094-15096
ORF1ab/nsp12552N552delN4944deldelAAT---2323115094-15096
ORF1ab/nsp12552N552KN4944KnonsynaaTaaA18130.72222215094-15096
ORF1ab/nsp12552N552KN4944KnonsynaaTaaG1850.27777815094-15096
ORF1ab/nsp12552N552DN4944DnonsynAatGat1414115094-15096
ORF1ab/nsp12552N552VN4944VnonsynAAtGTt77115094-15096
ORF1ab/nsp12552N552TN4944TnonsynaAtaCt55115094-15096
ORF1ab/nsp12552N552del1N4944del1delaaTaa-430.7515094-15096
ORF1ab/nsp12552N552IN4944InonsynaAtaTt430.7515094-15096
ORF1ab/nsp12552N552IN4944InonsynaATaTC410.2515094-15096
ORF1ab/nsp12552N552del1N4944del1delAaT-aC410.2515094-15096
ORF1ab/nsp12552N552HN4944HnonsynAatCat33115094-15096
ORF1ab/nsp12552N552YN4944YnonsynAatTat33115094-15096
ORF1ab/nsp12552N552SN4944SnonsynaAtaGt22115094-15096
ORF1ab/nsp12552N552CN4944CnonsynAAtTGt11115094-15096
ORF1ab/nsp12552N552LN4944LnonsynAATCTG11115094-15096

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12552N552NaaTaaC228744228744All0.04375
ORF1ab/nsp12552N552NaaTaaC225381225381B.1.1.70.201766
ORF1ab/nsp12552N552NaaTaaC891891Q.80.146933
ORF1ab/nsp12552N552NaaTaaC881881Q.70.978889
ORF1ab/nsp12552N552NaaTaaC260260B.1.10.004717
ORF1ab/nsp12552N552NaaTaaC255255Q.10.032213
ORF1ab/nsp12552N552NaaTaaC169169B.10.001548
ORF1ab/nsp12552N552NaaTaaC148148B.1.3510.0044
ORF1ab/nsp12552N552NaaTaaC146146Q.60.966887
ORF1ab/nsp12552N552NaaTaaC144144AY.40.000224
ORF1ab/nsp12552N552NaaTaaC4444AY.30.000438
ORF1ab/nsp12552N552NaaTaaC2929B.1.351.20.008775
ORF1ab/nsp12552N552NaaTaaC2828B.1.3750.022951
ORF1ab/nsp12552N552NaaTaaC2727B.1.1770.000356
ORF1ab/nsp12552N552NaaTaaC2626B.1.177.600.005679
ORF1ab/nsp12552N552NaaTaaC2424B.1.177.730.01359
ORF1ab/nsp12552N552delAAT---2323All0.000004
ORF1ab/nsp12552N552NaaTaaC1919B.1.617.20.000072
ORF1ab/nsp12552N552KaaTaaA1318All0.000002
ORF1ab/nsp12552N552KaaTaaG518All0.000001
ORF1ab/nsp12552N552NaaTaaC1616AY.250.000096
ORF1ab/nsp12552N552NaaTaaC1616AY.34.10.008159
ORF1ab/nsp12552N552DAatGat1414All0.000003
ORF1ab/nsp12552N552NaaTaaC1212B.1.5760.010879
ORF1ab/nsp12552N552NaaTaaC88B.1.1600.00025
ORF1ab/nsp12552N552NaaTaaC88B.1.20.00007
ORF1ab/nsp12552N552NaaTaaC88P.10.000126
ORF1ab/nsp12552N552NaaTaaC88Q.40.003638
ORF1ab/nsp12552N552VAAtGTt77All0.000001
ORF1ab/nsp12552N552NaaTaaC77B0.000895
ORF1ab/nsp12552N552VAAtGTt660.333333
ORF1ab/nsp12552N552NaaTaaC66AY.390.000148
ORF1ab/nsp12552N552NaaTaaC66AY.430.000027
ORF1ab/nsp12552N552delAAT---66B.1.1.70.000005
ORF1ab/nsp12552N552NaaTaaC66B.1.177.70.000989
ORF1ab/nsp12552N552TaAtaCt55All0.000001
ORF1ab/nsp12552N552NaaTaaC55AY.440.00003
ORF1ab/nsp12552N552NaaTaaC55AY.7.10.000564
ORF1ab/nsp12552N552NaaTaaC55B.1.1.4090.014164
ORF1ab/nsp12552N552TaAtaCt55B.1.1.70.000004
ORF1ab/nsp12552N552NaaTaaC55C.36.30.002836
ORF1ab/nsp12552N552del1aaTaa-34All0.000001
ORF1ab/nsp12552N552IaAtaTt34All0.000001
ORF1ab/nsp12552N552IaATaTC14All0
ORF1ab/nsp12552N552del1AaT-aC14All0
ORF1ab/nsp12552N552NaaTaaC44AY.260.000113
ORF1ab/nsp12552N552KaaTaaA44AY.430.000018
ORF1ab/nsp12552N552NaaTaaC44B.1.5260.000094
ORF1ab/nsp12552N552NaaTaaC44B.1.5960.000349
ORF1ab/nsp12552N552NaaTaaC44C.370.000464
ORF1ab/nsp12552N552NaaTaaC330.166667
ORF1ab/nsp12552N552YAatTat33All0.000001
ORF1ab/nsp12552N552HAatCat33All0.000001
ORF1ab/nsp12552N552NaaTaaC33AY.1210.000406
ORF1ab/nsp12552N552NaaTaaC33AY.200.000117
ORF1ab/nsp12552N552NaaTaaC33AY.340.000291
ORF1ab/nsp12552N552NaaTaaC33AY.450.000365
ORF1ab/nsp12552N552NaaTaaC33AY.610.000314
ORF1ab/nsp12552N552KaaTaaG23B.1.10.000036
ORF1ab/nsp12552N552KaaTaaA13B.1.10.000018
ORF1ab/nsp12552N552NaaTaaC33B.1.1.2050.011152
ORF1ab/nsp12552N552NaaTaaC33B.1.177.310.034483
ORF1ab/nsp12552N552NaaTaaC33B.1.2210.000213
ORF1ab/nsp12552N552NaaTaaC33B.1.4110.011111
ORF1ab/nsp12552N552NaaTaaC33B.1.6090.001438
ORF1ab/nsp12552N552NaaTaaC33B.1.6200.002838
ORF1ab/nsp12552N552NaaTaaC33Q.50.050847
ORF1ab/nsp12552N552YAatTat220.111111
ORF1ab/nsp12552N552NaaTaaC22A0.000774
ORF1ab/nsp12552N552SaAtaGt22All0
ORF1ab/nsp12552N552NaaTaaC22AY.1030.000012
ORF1ab/nsp12552N552NaaTaaC22AY.1080.002205
ORF1ab/nsp12552N552NaaTaaC22AY.1190.000071
ORF1ab/nsp12552N552DAatGat22AY.30.00002
ORF1ab/nsp12552N552DAatGat22AY.40.000003
ORF1ab/nsp12552N552delAAT---22AY.40.000003
ORF1ab/nsp12552N552NaaTaaC22AY.750.000112
ORF1ab/nsp12552N552NaaTaaC22AY.98.10.000097
ORF1ab/nsp12552N552DAatGat22B.10.000018
ORF1ab/nsp12552N552NaaTaaC22B.1.1.1410.004024
ORF1ab/nsp12552N552NaaTaaC22B.1.1.1610.007067
ORF1ab/nsp12552N552NaaTaaC22B.1.1.280.000622
ORF1ab/nsp12552N552NaaTaaC22B.1.1.2990.02439
ORF1ab/nsp12552N552NaaTaaC22B.1.1.390.001019
ORF1ab/nsp12552N552NaaTaaC22B.1.1.5190.000079
ORF1ab/nsp12552N552NaaTaaC22B.1.2370.00995
ORF1ab/nsp12552N552NaaTaaC22B.1.2400.000431
ORF1ab/nsp12552N552NaaTaaC22B.1.5250.000226
ORF1ab/nsp12552N552NaaTaaC22B.1.6210.000177
ORF1ab/nsp12552N552NaaTaaC22B.1.621.10.001012
ORF1ab/nsp12552N552delAAT---22P.10.000032
ORF1ab/nsp12552N552NaaTaaC22P.1.150.000465
ORF1ab/nsp12552N552NaaTaaC22P.1.160.000748
ORF1ab/nsp12552N552NaaTaaC22P.1.170.000324
ORF1ab/nsp12552N552NaaTaaC22Q.30.00029
ORF1ab/nsp12552N552KaaTaaA11A0.000387
ORF1ab/nsp12552N552NaaTaaC11A.10.000282
ORF1ab/nsp12552N552DAatGat11A.10.000282
ORF1ab/nsp12552N552KaaTaaA11A.2.40.003367
ORF1ab/nsp12552N552HAatCat11A.2.40.003367
ORF1ab/nsp12552N552NaaTaaC11A.2.50.000499
ORF1ab/nsp12552N552NaaTaaC11A.23.10.000704
ORF1ab/nsp12552N552LAATCTG11All0
ORF1ab/nsp12552N552CAAtTGt11All0
ORF1ab/nsp12552N552NaaTaaC11AY.1000.000046
ORF1ab/nsp12552N552NaaTaaC11AY.1020.000027
ORF1ab/nsp12552N552KaaTaaA11AY.1030.000006
ORF1ab/nsp12552N552NaaTaaC11AY.1060.000335
ORF1ab/nsp12552N552delAAT---11AY.1110.000183
ORF1ab/nsp12552N552NaaTaaC11AY.230.00007
ORF1ab/nsp12552N552SaAtaGt11AY.250.000006
ORF1ab/nsp12552N552delAAT---11AY.250.000006
ORF1ab/nsp12552N552NaaTaaC11AY.29.10.000221
ORF1ab/nsp12552N552del1aaTaa-11AY.30.00001
ORF1ab/nsp12552N552IaATaTC11AY.30.00001
ORF1ab/nsp12552N552NaaTaaC11AY.330.000067
ORF1ab/nsp12552N552KaaTaaA11AY.330.000067
ORF1ab/nsp12552N552KaaTaaA11AY.390.000025
ORF1ab/nsp12552N552KaaTaaA11AY.40.000002
ORF1ab/nsp12552N552DAatGat11AY.4.20.000022
ORF1ab/nsp12552N552NaaTaaC11AY.420.00004
ORF1ab/nsp12552N552delAAT---11AY.420.00004
ORF1ab/nsp12552N552CAAtTGt11AY.430.000004
ORF1ab/nsp12552N552IaAtaTt11AY.430.000004
ORF1ab/nsp12552N552KaaTaaG11AY.440.000006
ORF1ab/nsp12552N552NaaTaaC11AY.470.000031
ORF1ab/nsp12552N552KaaTaaA11AY.490.003195
ORF1ab/nsp12552N552NaaTaaC11AY.560.001605
ORF1ab/nsp12552N552DAatGat11AY.590.00053
ORF1ab/nsp12552N552delAAT---11AY.590.00053
ORF1ab/nsp12552N552delAAT---11AY.650.000533
ORF1ab/nsp12552N552delAAT---11AY.840.000437
ORF1ab/nsp12552N552NaaTaaC11AY.900.000684
ORF1ab/nsp12552N552NaaTaaC11AY.980.000079
ORF1ab/nsp12552N552DAatGat11AY.98.10.000048
ORF1ab/nsp12552N552DAatGat11AY.990.001049
ORF1ab/nsp12552N552del1aaTaa-11B.1.10.000018
ORF1ab/nsp12552N552HAatCat11B.1.10.000018
ORF1ab/nsp12552N552delAAT---11B.1.10.000018
ORF1ab/nsp12552N552VAAtGTt11B.1.10.000018
ORF1ab/nsp12552N552NaaTaaC11B.1.1.1870.00885
ORF1ab/nsp12552N552NaaTaaC11B.1.1.2310.003096
ORF1ab/nsp12552N552NaaTaaC11B.1.1.2940.001266
ORF1ab/nsp12552N552NaaTaaC11B.1.1.3060.000438
ORF1ab/nsp12552N552NaaTaaC11B.1.1.430.014925
ORF1ab/nsp12552N552NaaTaaC11B.1.1.4330.001425
ORF1ab/nsp12552N552NaaTaaC11B.1.1.5150.02
ORF1ab/nsp12552N552NaaTaaC11B.1.1.5230.001563
ORF1ab/nsp12552N552NaaTaaC11B.1.1.5250.005464
ORF1ab/nsp12552N552NaaTaaC11B.1.1.630.000386
ORF1ab/nsp12552N552IaAtaTt11B.1.1.70.000001
ORF1ab/nsp12552N552HAatCat11B.1.1.70.000001
ORF1ab/nsp12552N552delAAT---11B.1.160.230.004831
ORF1ab/nsp12552N552NaaTaaC11B.1.1700.00431
ORF1ab/nsp12552N552KaaTaaG11B.1.1770.000013
ORF1ab/nsp12552N552DAatGat11B.1.177.440.000519
ORF1ab/nsp12552N552delAAT---11B.1.177.540.000606
ORF1ab/nsp12552N552delAAT---11B.1.177.680.015152
ORF1ab/nsp12552N552SaAtaGt11B.1.20.000009
ORF1ab/nsp12552N552DAatGat11B.1.20.000009
ORF1ab/nsp12552N552NaaTaaC11B.1.220.001318
ORF1ab/nsp12552N552NaaTaaC11B.1.2580.000067
ORF1ab/nsp12552N552NaaTaaC11B.1.2600.003344
ORF1ab/nsp12552N552NaaTaaC11B.1.3110.000275
ORF1ab/nsp12552N552DAatGat11B.1.3510.00003
ORF1ab/nsp12552N552NaaTaaC11B.1.351.50.0006
ORF1ab/nsp12552N552NaaTaaC11B.1.360.000146
ORF1ab/nsp12552N552NaaTaaC11B.1.36.10.00114
ORF1ab/nsp12552N552NaaTaaC11B.1.3610.001289
ORF1ab/nsp12552N552NaaTaaC11B.1.3900.010638
ORF1ab/nsp12552N552IaAtaTt11B.1.3980.002976
ORF1ab/nsp12552N552NaaTaaC11B.1.415.10.007576
ORF1ab/nsp12552N552YAatTat11B.1.4160.001269
ORF1ab/nsp12552N552NaaTaaC11B.1.4270.00005
ORF1ab/nsp12552N552NaaTaaC11B.1.4290.000024
ORF1ab/nsp12552N552NaaTaaC11B.1.4320.011236
ORF1ab/nsp12552N552NaaTaaC11B.1.4970.000315
ORF1ab/nsp12552N552NaaTaaC11B.1.5160.001957
ORF1ab/nsp12552N552NaaTaaC11B.1.5330.009615
ORF1ab/nsp12552N552NaaTaaC11B.1.5610.000397
ORF1ab/nsp12552N552NaaTaaC11B.1.5750.000303
ORF1ab/nsp12552N552NaaTaaC11B.1.5800.004065
ORF1ab/nsp12552N552del1AaT-aC11B.1.5960.000087
ORF1ab/nsp12552N552delAAT---11B.1.5960.000087
ORF1ab/nsp12552N552NaaTaaC11B.1.596.10.009346
ORF1ab/nsp12552N552del1aaTaa-11B.1.617.10.000129
ORF1ab/nsp12552N552delAAT---11B.1.617.20.000004
ORF1ab/nsp12552N552KaaTaaA11B.1.617.20.000004
ORF1ab/nsp12552N552LAATCTG11B.1.6210.000089
ORF1ab/nsp12552N552NaaTaaC11B.1.6230.000536
ORF1ab/nsp12552N552NaaTaaC11B.1.6330.041667
ORF1ab/nsp12552N552NaaTaaC11B.1.6360.006711
ORF1ab/nsp12552N552NaaTaaC11B.1.6370.000073
ORF1ab/nsp12552N552NaaTaaC11B.350.007812
ORF1ab/nsp12552N552KaaTaaG11C.290.0625
ORF1ab/nsp12552N552NaaTaaC11P.1.10.000318
ORF1ab/nsp12552N552NaaTaaC11P.1.140.000048
ORF1ab/nsp12552N552delAAT---11P.1.40.000977
ORF1ab/nsp12552N552NaaTaaC11P.30.001595
ORF1ab/nsp12552N552NaaTaaC11R.10.00009