CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 529 | A529V | A4921V | nonsyn | gCa | gTa | 12796 | 12789 | 0.999453 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529V | A4921V | nonsyn | gCA | gTT | 12796 | 3 | 0.000234448 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529V | A4921V | nonsyn | gCA | gTC | 12796 | 2 | 0.000156299 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529V | A4921V | nonsyn | gCA | gTG | 12796 | 2 | 0.000156299 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529S | A4921S | nonsyn | Gca | Tca | 1820 | 1816 | 0.997802 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529S | A4921S | nonsyn | GcA | TcG | 1820 | 2 | 0.0010989 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529S | A4921S | nonsyn | GcA | TcT | 1820 | 1 | 0.000549451 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529S | A4921S | nonsyn | GcA | TcC | 1820 | 1 | 0.000549451 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529T | A4921T | nonsyn | Gca | Aca | 1240 | 1240 | 1 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529A | A4921A | syn | gcA | gcG | 879 | 708 | 0.805461 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529A | A4921A | syn | gcA | gcT | 879 | 128 | 0.14562 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529A | A4921A | syn | gcA | gcC | 879 | 43 | 0.0489192 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529del | A4921del | del | GCA | --- | 52 | 52 | 1 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529L | A4921L | nonsyn | GCa | TTa | 16 | 6 | 0.375 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529L | A4921L | nonsyn | GCa | CTa | 16 | 3 | 0.1875 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529L | A4921L | nonsyn | GCA | CTG | 16 | 2 | 0.125 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529L | A4921L | nonsyn | GCA | TTG | 16 | 2 | 0.125 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529L | A4921L | nonsyn | GCA | CTT | 16 | 2 | 0.125 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529L | A4921L | nonsyn | GCA | CTC | 16 | 1 | 0.0625 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529E | A4921E | nonsyn | gCa | gAa | 11 | 10 | 0.909091 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529E | A4921E | nonsyn | gCA | gAG | 11 | 1 | 0.0909091 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529del1 | A4921del1 | del | gcA | gc- | 8 | 4 | 0.5 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529del1 | A4921del1 | del | GCa | -Ha | 8 | 2 | 0.25 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529del1 | A4921del1 | del | Gca | -ca | 8 | 1 | 0.125 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529del1 | A4921del1 | del | gCa | g-a | 8 | 1 | 0.125 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529I | A4921I | nonsyn | GCA | ATC | 4 | 2 | 0.5 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529I | A4921I | nonsyn | GCa | ATa | 4 | 2 | 0.5 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529P | A4921P | nonsyn | Gca | Cca | 3 | 3 | 1 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529F | A4921F | nonsyn | GCA | TTT | 3 | 2 | 0.666667 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529F | A4921F | nonsyn | GCA | TTC | 3 | 1 | 0.333333 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529M | A4921M | nonsyn | GCA | ATG | 2 | 2 | 1 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529G | A4921G | nonsyn | gCa | gGa | 2 | 2 | 1 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529X | A4921X | nonsyn | GCa | TGa | 1 | 1 | 1 | 15025-15027 |
ORF1ab/nsp12 | 529 | A529R | A4921R | nonsyn | GCa | AGa | 1 | 1 | 1 | 15025-15027 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 12789 | 12796 | All | 0.002446 |
ORF1ab/nsp12 | 529 | A529V | gCA | gTT | 3 | 12796 | All | 0.000001 |
ORF1ab/nsp12 | 529 | A529V | gCA | gTG | 2 | 12796 | All | 0 |
ORF1ab/nsp12 | 529 | A529V | gCA | gTC | 2 | 12796 | All | 0 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2601 | 2601 | B.1.1.7 | 0.002328 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1816 | 1820 | All | 0.000347 |
ORF1ab/nsp12 | 529 | A529S | GcA | TcG | 2 | 1820 | All | 0 |
ORF1ab/nsp12 | 529 | A529S | GcA | TcC | 1 | 1820 | All | 0 |
ORF1ab/nsp12 | 529 | A529S | GcA | TcT | 1 | 1820 | All | 0 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1255 | 1255 | B.1.628 | 0.442213 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1240 | 1240 | All | 0.000237 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1233 | 1234 | B.1.1.7 | 0.001104 |
ORF1ab/nsp12 | 529 | A529S | GcA | TcG | 1 | 1234 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 708 | 879 | All | 0.000135 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 128 | 879 | All | 0.000024 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 43 | 879 | All | 0.000008 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 824 | 824 | C.36.3 | 0.467385 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 794 | 794 | AY.120 | 0.02952 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 767 | 767 | AY.103 | 0.004762 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 639 | 639 | AY.4 | 0.000995 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 613 | 613 | AY.64 | 0.364881 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 462 | 462 | B.1.526 | 0.010859 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 445 | 445 | B.1.258 | 0.029613 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 408 | 408 | AY.42 | 0.016414 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 397 | 397 | B.1.617.2 | 0.001495 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 391 | 391 | B.1.588 | 0.355778 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 345 | 345 | B.1.2 | 0.003038 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 226 | 226 | B.1 | 0.00207 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 220 | 221 | AY.44 | 0.001339 |
ORF1ab/nsp12 | 529 | A529V | gCA | gTC | 1 | 221 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 191 | 191 | AY.33 | 0.012755 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 184 | 184 | AY.25 | 0.001107 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 141 | 141 | AY.3 | 0.001402 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 140 | 140 | B.1.351 | 0.004162 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 139 | 139 | AY.119 | 0.004908 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 136 | 136 | B.1.466.1 | 0.978417 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 135 | 135 | AY.43 | 0.000598 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 116 | 116 | AY.25 | 0.000698 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 114 | 114 | B.1.243 | 0.007933 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 104 | 104 | AY.41 | 0.03057 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 95 | 95 | AY.29 | 0.001498 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 85 | 85 | AY.4 | 0.000132 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 82 | 82 | B.1.617.2 | 0.000309 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 78 | 78 | P.1 | 0.001229 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 72 | 72 | AY.98.1 | 0.003487 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 71 | 72 | B.1.1.519 | 0.002819 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 1 | 72 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 69 | 69 | AY.23 | 0.004813 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 59 | 68 | AY.4 | 0.000092 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 8 | 68 | AY.4 | 0.000012 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 1 | 68 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 67 | 67 | B.1.1 | 0.001215 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 65 | 65 | AY.25 | 0.000391 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 60 | 60 | AY.117 | 0.005071 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 60 | 60 | AY.47 | 0.001866 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 55 | 55 | AY.118 | 0.003446 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 53 | 53 | B.1.1.7 | 0.000047 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 52 | 52 | All | 0.00001 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 52 | 52 | AY.20 | 0.002021 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 51 | 51 | B.1.429 | 0.0012 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 50 | 50 | B.1.470 | 0.070225 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 48 | 49 | B.1 | 0.00044 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 1 | 49 | B.1 | 0.000009 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 49 | 49 | B.1.438.1 | 0.005256 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 48 | 48 | B.1.1.214 | 0.002662 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 47 | 47 | B.1.177.35 | 0.032481 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 46 | 46 | B.1.1.519 | 0.001827 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 46 | 46 | B.1.623 | 0.024678 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 44 | 44 | AY.120.2.1 | 0.021923 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 44 | 44 | B.1.177.6 | 0.042969 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 42 | 42 | AY.102 | 0.001114 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 42 | 42 | AY.4.2 | 0.000911 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 40 | 40 | AY.43 | 0.000177 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 39 | 39 | AY.4 | 0.000061 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 39 | 39 | AY.43 | 0.000173 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 36 | 36 | AY.39 | 0.00089 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 36 | 36 | C.37 | 0.004178 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 35 | 35 | AY.20 | 0.00136 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 35 | 35 | P.1.7 | 0.011175 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 34 | 34 | AY.117 | 0.002874 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 33 | 33 | B.1.426 | 0.0333 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 32 | 32 | B.1.36 | 0.004669 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 30 | 30 | AY.6 | 0.001234 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 16 | 30 | B.1.1.7 | 0.000014 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 8 | 30 | B.1.1.7 | 0.000007 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 6 | 30 | B.1.1.7 | 0.000005 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 29 | 29 | AY.6 | 0.001193 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 28 | 28 | B.1.177.33 | 0.046053 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 27 | 27 | AY.104 | 0.053571 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 26 | 26 | AY.20 | 0.00101 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 25 | 25 | B.1.595 | 0.006524 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 24 | 24 | B.1.427 | 0.001212 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 23 | 23 | B.1.1.70 | 0.007844 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 23 | 23 | B.1.160 | 0.000717 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 22 | 22 | AY.100 | 0.001012 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 20 | 20 | B.1.177 | 0.000263 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 20 | 20 | B.1.596 | 0.001743 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 19 | 19 | A.28 | 0.050265 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 19 | 19 | AY.9.2 | 0.000698 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 19 | 19 | B.1.1.58 | 0.102151 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 17 | 17 | AY.26 | 0.000481 |
ORF1ab/nsp12 | 529 | A529L | GCa | TTa | 6 | 16 | All | 0.000001 |
ORF1ab/nsp12 | 529 | A529L | GCa | CTa | 3 | 16 | All | 0.000001 |
ORF1ab/nsp12 | 529 | A529L | GCA | CTT | 2 | 16 | All | 0 |
ORF1ab/nsp12 | 529 | A529L | GCA | CTG | 2 | 16 | All | 0 |
ORF1ab/nsp12 | 529 | A529L | GCA | TTG | 2 | 16 | All | 0 |
ORF1ab/nsp12 | 529 | A529L | GCA | CTC | 1 | 16 | All | 0 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 16 | 16 | C.36 | 0.014572 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 15 | 15 | AY.44 | 0.000091 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 15 | 15 | B.1.221 | 0.001065 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 15 | 15 | B.1.637 | 0.001096 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 14 | 14 | AY.44 | 0.000085 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 14 | 14 | AY.5.4 | 0.003874 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 14 | 14 | B.1.177.12 | 0.002124 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 14 | 14 | B.1.177.81 | 0.002651 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 13 | 14 | B.1.2 | 0.000114 |
ORF1ab/nsp12 | 529 | A529S | GcA | TcG | 1 | 14 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 13 | 13 | AY.57 | 0.00853 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 13 | 13 | B.1.258.14 | 0.012745 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 13 | 13 | B.1.36 | 0.001897 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 12 | 12 | B.1.234 | 0.001583 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 6 | 12 | B.1.617.2 | 0.000023 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 6 | 12 | B.1.617.2 | 0.000023 |
ORF1ab/nsp12 | 529 | A529L | GCa | TTa | 3 | 11 | 0.166667 | |
ORF1ab/nsp12 | 529 | A529L | GCA | TTG | 2 | 11 | 0.111111 | |
ORF1ab/nsp12 | 529 | A529L | GCA | CTG | 2 | 11 | 0.111111 | |
ORF1ab/nsp12 | 529 | A529L | GCA | CTT | 2 | 11 | 0.111111 | |
ORF1ab/nsp12 | 529 | A529L | GCa | CTa | 2 | 11 | 0.111111 | |
ORF1ab/nsp12 | 529 | A529E | gCa | gAa | 10 | 11 | All | 0.000002 |
ORF1ab/nsp12 | 529 | A529E | gCA | gAG | 1 | 11 | All | 0 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 11 | 11 | AY.118 | 0.000689 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 10 | 11 | AY.3 | 0.000099 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 11 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 11 | 11 | AY.36 | 0.00163 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 11 | 11 | AY.46.6 | 0.000794 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 11 | 11 | AY.54 | 0.001049 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 11 | 11 | AY.79 | 0.013317 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 11 | 11 | B.1.634 | 0.037671 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 10 | 0.222222 | |
ORF1ab/nsp12 | 529 | A529V | gCA | gTT | 3 | 10 | 0.166667 | |
ORF1ab/nsp12 | 529 | A529V | gCA | gTG | 2 | 10 | 0.111111 | |
ORF1ab/nsp12 | 529 | A529V | gCA | gTC | 1 | 10 | 0.055556 | |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 10 | 10 | AY.114 | 0.002311 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 9 | 9 | AY.30 | 0.003562 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 9 | 9 | AY.90 | 0.00616 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 9 | 9 | B.1.128 | 0.005718 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp12 | 529 | A529del1 | gcA | gc- | 4 | 8 | All | 0.000001 |
ORF1ab/nsp12 | 529 | A529del1 | GCa | -Ha | 2 | 8 | All | 0 |
ORF1ab/nsp12 | 529 | A529del1 | gCa | g-a | 1 | 8 | All | 0 |
ORF1ab/nsp12 | 529 | A529del1 | Gca | -ca | 1 | 8 | All | 0 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | AY.4.2.1 | 0.001192 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | AY.65 | 0.004264 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | AY.99 | 0.008395 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 8 | 8 | Q.2 | 0.004908 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 4 | 7 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 3 | 7 | AY.103 | 0.000019 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 7 | 7 | B.1.1.205 | 0.026022 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 7 | 7 | B.1.1.525 | 0.038251 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 7 | 7 | B.1.111 | 0.008226 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 7 | 7 | B.1.351.2 | 0.002118 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 7 | 7 | B.1.575 | 0.002124 |
ORF1ab/nsp12 | 529 | A529E | gCa | gAa | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 6 | 6 | AY.37 | 0.001896 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 3 | 6 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 3 | 6 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 6 | 6 | B.23 | 0.017544 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 6 | 6 | P.1.12 | 0.002904 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | AY.17 | 0.040984 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | B | 0.000639 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | B.1.1.153 | 0.005476 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 5 | 5 | B.1.499 | 0.005252 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 5 | 5 | B.1.567 | 0.016667 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | A.21 | 0.01108 |
ORF1ab/nsp12 | 529 | A529I | GCa | ATa | 2 | 4 | All | 0 |
ORF1ab/nsp12 | 529 | A529I | GCA | ATC | 2 | 4 | All | 0 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 2 | 4 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.66 | 0.004278 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.279 | 0.002054 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.459 | 0.016327 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | B.1.539 | 0.070175 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | C.36.3.1 | 0.01087 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 4 | 4 | P.1.2 | 0.004624 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp12 | 529 | A529F | GCA | TTT | 2 | 3 | 0.111111 | |
ORF1ab/nsp12 | 529 | A529F | GCA | TTC | 1 | 3 | 0.055556 | |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp12 | 529 | A529P | Gca | Cca | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 529 | A529F | GCA | TTT | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 529 | A529F | GCA | TTC | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.1.236 | 0.02069 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 3 | B.1.1.306 | 0.000877 |
ORF1ab/nsp12 | 529 | A529S | GcA | TcT | 1 | 3 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.177.17 | 0.002463 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.177.24 | 0.003886 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 3 | 3 | B.1.219 | 0.028302 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.237 | 0.014925 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.258.3 | 0.005025 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.389 | 0.003006 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | B.1.9.5 | 0.017045 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp12 | 529 | A529del1 | GCa | -Ha | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 529 | A529M | GCA | ATG | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 529 | A529S | GcA | TcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | A | 0.000774 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | A.2.4 | 0.006734 |
ORF1ab/nsp12 | 529 | A529G | gCa | gGa | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 529 | A529M | GCA | ATG | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp12 | 529 | A529L | GCa | CTa | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 529 | A529I | GCa | ATa | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 529 | A529L | GCA | CTC | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 529 | A529I | GCA | ATC | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.253 | 0.005013 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | B.1.1.525 | 0.010929 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 529 | A529E | gCa | gAa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.260 | 0.006689 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | B.1.381 | 0.015625 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.460 | 0.035714 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.567 | 0.006667 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.573 | 0.012195 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | B.1.81 | 0.042553 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp12 | 529 | A529X | GCa | TGa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 529 | A529R | GCa | AGa | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 529 | A529L | GCa | TTa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 529 | A529del1 | gcA | gc- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 529 | A529G | gCa | gGa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 529 | A529E | gCA | gAG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 529 | A529P | Gca | Cca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 529 | A529del1 | gcA | gc- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 529 | A529del1 | gcA | gc- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 529 | A529E | gCa | gAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 529 | A529G | gCa | gGa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 529 | A529L | GCa | TTa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 529 | A529X | GCa | TGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 529 | A529P | Gca | Cca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 529 | A529R | GCa | AGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 529 | A529I | GCa | ATa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp12 | 529 | A529del1 | gcA | gc- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.1.396 | 0.045455 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.1.461 | 0.012048 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.483 | 0.038462 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp12 | 529 | A529L | GCa | TTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 529 | A529del1 | Gca | -ca | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 1 | 1 | B.1.212 | 0.016667 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.243.2 | 0.014493 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp12 | 529 | A529I | GCA | ATC | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 529 | A529del1 | gCa | g-a | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp12 | 529 | A529E | gCa | gAa | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.572 | 0.025 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 529 | A529P | Gca | Cca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | B.47 | 0.020408 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp12 | 529 | A529S | Gca | Tca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 529 | A529T | Gca | Aca | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp12 | 529 | A529A | gcA | gcG | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp12 | 529 | A529V | gCa | gTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp12 | 529 | A529del | GCA | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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