CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 529

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12529A529VA4921VnonsyngCagTa12796127890.99945315025-15027
ORF1ab/nsp12529A529VA4921VnonsyngCAgTT1279630.00023444815025-15027
ORF1ab/nsp12529A529VA4921VnonsyngCAgTC1279620.00015629915025-15027
ORF1ab/nsp12529A529VA4921VnonsyngCAgTG1279620.00015629915025-15027
ORF1ab/nsp12529A529SA4921SnonsynGcaTca182018160.99780215025-15027
ORF1ab/nsp12529A529SA4921SnonsynGcATcG182020.001098915025-15027
ORF1ab/nsp12529A529SA4921SnonsynGcATcT182010.00054945115025-15027
ORF1ab/nsp12529A529SA4921SnonsynGcATcC182010.00054945115025-15027
ORF1ab/nsp12529A529TA4921TnonsynGcaAca12401240115025-15027
ORF1ab/nsp12529A529AA4921AsyngcAgcG8797080.80546115025-15027
ORF1ab/nsp12529A529AA4921AsyngcAgcT8791280.1456215025-15027
ORF1ab/nsp12529A529AA4921AsyngcAgcC879430.048919215025-15027
ORF1ab/nsp12529A529delA4921deldelGCA---5252115025-15027
ORF1ab/nsp12529A529LA4921LnonsynGCaTTa1660.37515025-15027
ORF1ab/nsp12529A529LA4921LnonsynGCaCTa1630.187515025-15027
ORF1ab/nsp12529A529LA4921LnonsynGCACTG1620.12515025-15027
ORF1ab/nsp12529A529LA4921LnonsynGCATTG1620.12515025-15027
ORF1ab/nsp12529A529LA4921LnonsynGCACTT1620.12515025-15027
ORF1ab/nsp12529A529LA4921LnonsynGCACTC1610.062515025-15027
ORF1ab/nsp12529A529EA4921EnonsyngCagAa11100.90909115025-15027
ORF1ab/nsp12529A529EA4921EnonsyngCAgAG1110.090909115025-15027
ORF1ab/nsp12529A529del1A4921del1delgcAgc-840.515025-15027
ORF1ab/nsp12529A529del1A4921del1delGCa-Ha820.2515025-15027
ORF1ab/nsp12529A529del1A4921del1delGca-ca810.12515025-15027
ORF1ab/nsp12529A529del1A4921del1delgCag-a810.12515025-15027
ORF1ab/nsp12529A529IA4921InonsynGCAATC420.515025-15027
ORF1ab/nsp12529A529IA4921InonsynGCaATa420.515025-15027
ORF1ab/nsp12529A529PA4921PnonsynGcaCca33115025-15027
ORF1ab/nsp12529A529FA4921FnonsynGCATTT320.66666715025-15027
ORF1ab/nsp12529A529FA4921FnonsynGCATTC310.33333315025-15027
ORF1ab/nsp12529A529MA4921MnonsynGCAATG22115025-15027
ORF1ab/nsp12529A529GA4921GnonsyngCagGa22115025-15027
ORF1ab/nsp12529A529XA4921XnonsynGCaTGa11115025-15027
ORF1ab/nsp12529A529RA4921RnonsynGCaAGa11115025-15027

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12529A529VgCagTa1278912796All0.002446
ORF1ab/nsp12529A529VgCAgTT312796All0.000001
ORF1ab/nsp12529A529VgCAgTG212796All0
ORF1ab/nsp12529A529VgCAgTC212796All0
ORF1ab/nsp12529A529VgCagTa26012601B.1.1.70.002328
ORF1ab/nsp12529A529SGcaTca18161820All0.000347
ORF1ab/nsp12529A529SGcATcG21820All0
ORF1ab/nsp12529A529SGcATcC11820All0
ORF1ab/nsp12529A529SGcATcT11820All0
ORF1ab/nsp12529A529VgCagTa12551255B.1.6280.442213
ORF1ab/nsp12529A529TGcaAca12401240All0.000237
ORF1ab/nsp12529A529SGcaTca12331234B.1.1.70.001104
ORF1ab/nsp12529A529SGcATcG11234B.1.1.70.000001
ORF1ab/nsp12529A529AgcAgcG708879All0.000135
ORF1ab/nsp12529A529AgcAgcT128879All0.000024
ORF1ab/nsp12529A529AgcAgcC43879All0.000008
ORF1ab/nsp12529A529VgCagTa824824C.36.30.467385
ORF1ab/nsp12529A529VgCagTa794794AY.1200.02952
ORF1ab/nsp12529A529VgCagTa767767AY.1030.004762
ORF1ab/nsp12529A529VgCagTa639639AY.40.000995
ORF1ab/nsp12529A529VgCagTa613613AY.640.364881
ORF1ab/nsp12529A529VgCagTa462462B.1.5260.010859
ORF1ab/nsp12529A529VgCagTa445445B.1.2580.029613
ORF1ab/nsp12529A529TGcaAca408408AY.420.016414
ORF1ab/nsp12529A529VgCagTa397397B.1.617.20.001495
ORF1ab/nsp12529A529AgcAgcG391391B.1.5880.355778
ORF1ab/nsp12529A529VgCagTa345345B.1.20.003038
ORF1ab/nsp12529A529VgCagTa226226B.10.00207
ORF1ab/nsp12529A529VgCagTa220221AY.440.001339
ORF1ab/nsp12529A529VgCAgTC1221AY.440.000006
ORF1ab/nsp12529A529VgCagTa191191AY.330.012755
ORF1ab/nsp12529A529VgCagTa184184AY.250.001107
ORF1ab/nsp12529A529VgCagTa141141AY.30.001402
ORF1ab/nsp12529A529VgCagTa140140B.1.3510.004162
ORF1ab/nsp12529A529VgCagTa139139AY.1190.004908
ORF1ab/nsp12529A529VgCagTa136136B.1.466.10.978417
ORF1ab/nsp12529A529VgCagTa135135AY.430.000598
ORF1ab/nsp12529A529SGcaTca116116AY.250.000698
ORF1ab/nsp12529A529VgCagTa114114B.1.2430.007933
ORF1ab/nsp12529A529VgCagTa104104AY.410.03057
ORF1ab/nsp12529A529VgCagTa9595AY.290.001498
ORF1ab/nsp12529A529TGcaAca8585AY.40.000132
ORF1ab/nsp12529A529TGcaAca8282B.1.617.20.000309
ORF1ab/nsp12529A529VgCagTa7878P.10.001229
ORF1ab/nsp12529A529TGcaAca7272AY.98.10.003487
ORF1ab/nsp12529A529AgcAgcG7172B.1.1.5190.002819
ORF1ab/nsp12529A529AgcAgcT172B.1.1.5190.00004
ORF1ab/nsp12529A529VgCagTa6969AY.230.004813
ORF1ab/nsp12529A529AgcAgcT5968AY.40.000092
ORF1ab/nsp12529A529AgcAgcG868AY.40.000012
ORF1ab/nsp12529A529AgcAgcC168AY.40.000002
ORF1ab/nsp12529A529VgCagTa6767B.1.10.001215
ORF1ab/nsp12529A529TGcaAca6565AY.250.000391
ORF1ab/nsp12529A529AgcAgcG6060AY.1170.005071
ORF1ab/nsp12529A529VgCagTa6060AY.470.001866
ORF1ab/nsp12529A529TGcaAca5555AY.1180.003446
ORF1ab/nsp12529A529TGcaAca5353B.1.1.70.000047
ORF1ab/nsp12529A529delGCA---5252All0.00001
ORF1ab/nsp12529A529VgCagTa5252AY.200.002021
ORF1ab/nsp12529A529VgCagTa5151B.1.4290.0012
ORF1ab/nsp12529A529VgCagTa5050B.1.4700.070225
ORF1ab/nsp12529A529AgcAgcG4849B.10.00044
ORF1ab/nsp12529A529AgcAgcT149B.10.000009
ORF1ab/nsp12529A529VgCagTa4949B.1.438.10.005256
ORF1ab/nsp12529A529VgCagTa4848B.1.1.2140.002662
ORF1ab/nsp12529A529SGcaTca4747B.1.177.350.032481
ORF1ab/nsp12529A529VgCagTa4646B.1.1.5190.001827
ORF1ab/nsp12529A529VgCagTa4646B.1.6230.024678
ORF1ab/nsp12529A529VgCagTa4444AY.120.2.10.021923
ORF1ab/nsp12529A529VgCagTa4444B.1.177.60.042969
ORF1ab/nsp12529A529VgCagTa4242AY.1020.001114
ORF1ab/nsp12529A529VgCagTa4242AY.4.20.000911
ORF1ab/nsp12529A529TGcaAca4040AY.430.000177
ORF1ab/nsp12529A529SGcaTca3939AY.40.000061
ORF1ab/nsp12529A529SGcaTca3939AY.430.000173
ORF1ab/nsp12529A529VgCagTa3636AY.390.00089
ORF1ab/nsp12529A529VgCagTa3636C.370.004178
ORF1ab/nsp12529A529TGcaAca3535AY.200.00136
ORF1ab/nsp12529A529VgCagTa3535P.1.70.011175
ORF1ab/nsp12529A529TGcaAca3434AY.1170.002874
ORF1ab/nsp12529A529VgCagTa3333B.1.4260.0333
ORF1ab/nsp12529A529SGcaTca3232B.1.360.004669
ORF1ab/nsp12529A529VgCagTa3030AY.60.001234
ORF1ab/nsp12529A529AgcAgcC1630B.1.1.70.000014
ORF1ab/nsp12529A529AgcAgcG830B.1.1.70.000007
ORF1ab/nsp12529A529AgcAgcT630B.1.1.70.000005
ORF1ab/nsp12529A529SGcaTca2929AY.60.001193
ORF1ab/nsp12529A529TGcaAca2828B.1.177.330.046053
ORF1ab/nsp12529A529TGcaAca2828B.1.20.000247
ORF1ab/nsp12529A529TGcaAca2727AY.1040.053571
ORF1ab/nsp12529A529SGcaTca2626AY.200.00101
ORF1ab/nsp12529A529AgcAgcG2525B.1.5950.006524
ORF1ab/nsp12529A529VgCagTa2424B.1.4270.001212
ORF1ab/nsp12529A529AgcAgcT2323B.1.1.700.007844
ORF1ab/nsp12529A529VgCagTa2323B.1.1600.000717
ORF1ab/nsp12529A529VgCagTa2222AY.1000.001012
ORF1ab/nsp12529A529SGcaTca2121B.1.617.20.000079
ORF1ab/nsp12529A529VgCagTa2020B.1.1770.000263
ORF1ab/nsp12529A529VgCagTa2020B.1.5960.001743
ORF1ab/nsp12529A529VgCagTa1919A.280.050265
ORF1ab/nsp12529A529VgCagTa1919AY.9.20.000698
ORF1ab/nsp12529A529VgCagTa1919B.1.1.580.102151
ORF1ab/nsp12529A529SGcaTca1717AY.260.000481
ORF1ab/nsp12529A529LGCaTTa616All0.000001
ORF1ab/nsp12529A529LGCaCTa316All0.000001
ORF1ab/nsp12529A529LGCACTT216All0
ORF1ab/nsp12529A529LGCACTG216All0
ORF1ab/nsp12529A529LGCATTG216All0
ORF1ab/nsp12529A529LGCACTC116All0
ORF1ab/nsp12529A529VgCagTa1616AY.260.000453
ORF1ab/nsp12529A529VgCagTa1616C.360.014572
ORF1ab/nsp12529A529TGcaAca1515AY.440.000091
ORF1ab/nsp12529A529VgCagTa1515B.1.2210.001065
ORF1ab/nsp12529A529AgcAgcG1515B.1.2430.001044
ORF1ab/nsp12529A529VgCagTa1515B.1.6370.001096
ORF1ab/nsp12529A529SGcaTca1414AY.440.000085
ORF1ab/nsp12529A529VgCagTa1414AY.5.40.003874
ORF1ab/nsp12529A529VgCagTa1414B.1.177.120.002124
ORF1ab/nsp12529A529VgCagTa1414B.1.177.810.002651
ORF1ab/nsp12529A529SGcaTca1314B.1.20.000114
ORF1ab/nsp12529A529SGcATcG114B.1.20.000009
ORF1ab/nsp12529A529VgCagTa1313AY.50.000268
ORF1ab/nsp12529A529SGcaTca1313AY.570.00853
ORF1ab/nsp12529A529SGcaTca1313B.1.1770.000171
ORF1ab/nsp12529A529AgcAgcG1313B.1.20.000114
ORF1ab/nsp12529A529SGcaTca1313B.1.258.140.012745
ORF1ab/nsp12529A529AgcAgcG1313B.1.360.001897
ORF1ab/nsp12529A529VgCagTa1212B.1.2340.001583
ORF1ab/nsp12529A529TGcaAca1212B.1.5260.000282
ORF1ab/nsp12529A529AgcAgcT612B.1.617.20.000023
ORF1ab/nsp12529A529AgcAgcG612B.1.617.20.000023
ORF1ab/nsp12529A529LGCaTTa3110.166667
ORF1ab/nsp12529A529LGCATTG2110.111111
ORF1ab/nsp12529A529LGCACTG2110.111111
ORF1ab/nsp12529A529LGCACTT2110.111111
ORF1ab/nsp12529A529LGCaCTa2110.111111
ORF1ab/nsp12529A529EgCagAa1011All0.000002
ORF1ab/nsp12529A529EgCAgAG111All0
ORF1ab/nsp12529A529TGcaAca1111AY.1020.000292
ORF1ab/nsp12529A529VgCagTa1111AY.1180.000689
ORF1ab/nsp12529A529AgcAgcT1011AY.30.000099
ORF1ab/nsp12529A529AgcAgcG111AY.30.00001
ORF1ab/nsp12529A529VgCagTa1111AY.360.00163
ORF1ab/nsp12529A529VgCagTa1111AY.46.60.000794
ORF1ab/nsp12529A529VgCagTa1111AY.540.001049
ORF1ab/nsp12529A529SGcaTca1111AY.790.013317
ORF1ab/nsp12529A529delGCA---1111B.1.1.70.00001
ORF1ab/nsp12529A529SGcaTca1111B.1.3510.000327
ORF1ab/nsp12529A529SGcaTca1111B.1.6340.037671
ORF1ab/nsp12529A529VgCagTa4100.222222
ORF1ab/nsp12529A529VgCAgTT3100.166667
ORF1ab/nsp12529A529VgCAgTG2100.111111
ORF1ab/nsp12529A529VgCAgTC1100.055556
ORF1ab/nsp12529A529SGcaTca1010AY.1030.000062
ORF1ab/nsp12529A529VgCagTa1010AY.1140.002311
ORF1ab/nsp12529A529VgCagTa1010AY.1170.000845
ORF1ab/nsp12529A529TGcaAca1010AY.290.000158
ORF1ab/nsp12529A529VgCagTa1010AY.450.001217
ORF1ab/nsp12529A529TGcaAca99AY.1030.000056
ORF1ab/nsp12529A529VgCagTa99AY.1210.001218
ORF1ab/nsp12529A529TGcaAca99AY.260.000255
ORF1ab/nsp12529A529TGcaAca99AY.30.00009
ORF1ab/nsp12529A529VgCagTa99AY.300.003562
ORF1ab/nsp12529A529VgCagTa99AY.900.00616
ORF1ab/nsp12529A529VgCagTa99B.1.1280.005718
ORF1ab/nsp12529A529VgCagTa99P.1.140.00043
ORF1ab/nsp12529A529del1gcAgc-48All0.000001
ORF1ab/nsp12529A529del1GCa-Ha28All0
ORF1ab/nsp12529A529del1gCag-a18All0
ORF1ab/nsp12529A529del1Gca-ca18All0
ORF1ab/nsp12529A529VgCagTa88AY.4.2.10.001192
ORF1ab/nsp12529A529VgCagTa88AY.4.50.00086
ORF1ab/nsp12529A529VgCagTa88AY.650.004264
ORF1ab/nsp12529A529VgCagTa88AY.990.008395
ORF1ab/nsp12529A529VgCagTa88B.1.3690.002282
ORF1ab/nsp12529A529AgcAgcC88B.1.5250.000905
ORF1ab/nsp12529A529VgCagTa88Q.20.004908
ORF1ab/nsp12529A529AgcAgcC47AY.1030.000025
ORF1ab/nsp12529A529AgcAgcT37AY.1030.000019
ORF1ab/nsp12529A529TGcaAca77AY.610.000733
ORF1ab/nsp12529A529TGcaAca77AY.99.20.000645
ORF1ab/nsp12529A529VgCagTa77B.1.1.10.002287
ORF1ab/nsp12529A529TGcaAca77B.1.1.2050.026022
ORF1ab/nsp12529A529VgCagTa77B.1.1.5250.038251
ORF1ab/nsp12529A529TGcaAca77B.1.1110.008226
ORF1ab/nsp12529A529TGcaAca77B.1.351.20.002118
ORF1ab/nsp12529A529TGcaAca77B.1.5750.002124
ORF1ab/nsp12529A529EgCagAa66AY.1030.000037
ORF1ab/nsp12529A529SGcaTca66AY.270.000388
ORF1ab/nsp12529A529SGcaTca66AY.30.00006
ORF1ab/nsp12529A529VgCagTa66AY.370.001896
ORF1ab/nsp12529A529AgcAgcT36AY.430.000013
ORF1ab/nsp12529A529AgcAgcG36AY.430.000013
ORF1ab/nsp12529A529VgCagTa66AY.46.40.000987
ORF1ab/nsp12529A529SGcaTca66AY.46.60.000433
ORF1ab/nsp12529A529SGcaTca66B.10.000055
ORF1ab/nsp12529A529VgCagTa66B.1.617.10.000774
ORF1ab/nsp12529A529TGcaAca66B.230.017544
ORF1ab/nsp12529A529VgCagTa66P.1.120.002904
ORF1ab/nsp12529A529VgCagTa55AY.170.040984
ORF1ab/nsp12529A529VgCagTa55AY.75.10.000902
ORF1ab/nsp12529A529VgCagTa55B0.000639
ORF1ab/nsp12529A529TGcaAca55B.10.000046
ORF1ab/nsp12529A529VgCagTa55B.1.1.1530.005476
ORF1ab/nsp12529A529VgCagTa55B.1.1.280.001556
ORF1ab/nsp12529A529VgCagTa55B.1.4990.005252
ORF1ab/nsp12529A529AgcAgcG55B.1.5670.016667
ORF1ab/nsp12529A529AgcAgcG55P.1.70.001596
ORF1ab/nsp12529A529VgCagTa44A.210.01108
ORF1ab/nsp12529A529IGCaATa24All0
ORF1ab/nsp12529A529IGCAATC24All0
ORF1ab/nsp12529A529SGcaTca44AY.1000.000184
ORF1ab/nsp12529A529VgCagTa44AY.1110.000733
ORF1ab/nsp12529A529VgCagTa44AY.130.000644
ORF1ab/nsp12529A529VgCagTa44AY.160.001519
ORF1ab/nsp12529A529VgCagTa44AY.16.10.00188
ORF1ab/nsp12529A529VgCagTa44AY.3.10.000341
ORF1ab/nsp12529A529VgCagTa44AY.340.000388
ORF1ab/nsp12529A529AgcAgcG24AY.440.000012
ORF1ab/nsp12529A529AgcAgcC14AY.440.000006
ORF1ab/nsp12529A529AgcAgcT14AY.440.000006
ORF1ab/nsp12529A529AgcAgcC44AY.46.60.000289
ORF1ab/nsp12529A529VgCagTa44AY.660.004278
ORF1ab/nsp12529A529VgCagTa44AY.750.000224
ORF1ab/nsp12529A529VgCagTa44AY.9.10.000335
ORF1ab/nsp12529A529TGcaAca44AY.9.10.000335
ORF1ab/nsp12529A529VgCagTa44AY.99.20.000369
ORF1ab/nsp12529A529SGcaTca44B.1.10.000073
ORF1ab/nsp12529A529VgCagTa44B.1.1.2220.000816
ORF1ab/nsp12529A529VgCagTa44B.1.1.3170.001647
ORF1ab/nsp12529A529VgCagTa44B.1.2790.002054
ORF1ab/nsp12529A529VgCagTa44B.1.36.290.002069
ORF1ab/nsp12529A529TGcaAca44B.1.4290.000094
ORF1ab/nsp12529A529VgCagTa44B.1.4590.016327
ORF1ab/nsp12529A529VgCagTa44B.1.5390.070175
ORF1ab/nsp12529A529VgCagTa44C.36.3.10.01087
ORF1ab/nsp12529A529TGcaAca44P.10.000063
ORF1ab/nsp12529A529SGcaTca44P.1.20.004624
ORF1ab/nsp12529A529VgCagTa44Q.10.000505
ORF1ab/nsp12529A529FGCATTT230.111111
ORF1ab/nsp12529A529FGCATTC130.055556
ORF1ab/nsp12529A529TGcaAca33A.2.50.001497
ORF1ab/nsp12529A529VgCagTa33A.2.50.001497
ORF1ab/nsp12529A529PGcaCca33All0.000001
ORF1ab/nsp12529A529FGCATTT23All0
ORF1ab/nsp12529A529FGCATTC13All0
ORF1ab/nsp12529A529VgCagTa33AY.10.001187
ORF1ab/nsp12529A529AgcAgcG33AY.1000.000138
ORF1ab/nsp12529A529VgCagTa33AY.1060.001005
ORF1ab/nsp12529A529delGCA---33AY.1070.001398
ORF1ab/nsp12529A529VgCagTa33AY.1090.002219
ORF1ab/nsp12529A529VgCagTa33AY.1100.000338
ORF1ab/nsp12529A529AgcAgcG33AY.1140.000693
ORF1ab/nsp12529A529TGcaAca33AY.1200.000112
ORF1ab/nsp12529A529VgCagTa33AY.320.001597
ORF1ab/nsp12529A529delGCA---33AY.40.000005
ORF1ab/nsp12529A529TGcaAca33AY.4.20.000065
ORF1ab/nsp12529A529SGcaTca33AY.420.000121
ORF1ab/nsp12529A529VgCagTa33AY.420.000121
ORF1ab/nsp12529A529VgCagTa33AY.460.000312
ORF1ab/nsp12529A529TGcaAca33AY.460.000312
ORF1ab/nsp12529A529TGcaAca33AY.46.60.000217
ORF1ab/nsp12529A529AgcAgcC33AY.610.000314
ORF1ab/nsp12529A529VgCagTa33AY.670.001393
ORF1ab/nsp12529A529VgCagTa33AY.730.001996
ORF1ab/nsp12529A529VgCagTa33AY.80.001818
ORF1ab/nsp12529A529VgCagTa33AY.930.000819
ORF1ab/nsp12529A529VgCagTa33AY.980.000237
ORF1ab/nsp12529A529AgcAgcG33AZ.20.002463
ORF1ab/nsp12529A529delGCA---33B.1.10.000054
ORF1ab/nsp12529A529VgCagTa33B.1.1.2360.02069
ORF1ab/nsp12529A529VgCagTa33B.1.1.250.001706
ORF1ab/nsp12529A529SGcaTca33B.1.1.250.001706
ORF1ab/nsp12529A529SGcaTca23B.1.1.3060.000877
ORF1ab/nsp12529A529SGcATcT13B.1.1.3060.000438
ORF1ab/nsp12529A529TGcaAca33B.1.1770.00004
ORF1ab/nsp12529A529VgCagTa33B.1.177.170.002463
ORF1ab/nsp12529A529VgCagTa33B.1.177.240.003886
ORF1ab/nsp12529A529VgCagTa33B.1.177.820.001432
ORF1ab/nsp12529A529TGcaAca33B.1.2190.028302
ORF1ab/nsp12529A529SGcaTca33B.1.2210.000213
ORF1ab/nsp12529A529VgCagTa33B.1.2370.014925
ORF1ab/nsp12529A529VgCagTa33B.1.258.30.005025
ORF1ab/nsp12529A529TGcaAca33B.1.3240.004815
ORF1ab/nsp12529A529VgCagTa33B.1.3890.003006
ORF1ab/nsp12529A529VgCagTa33B.1.4110.011111
ORF1ab/nsp12529A529TGcaAca33B.1.4270.000151
ORF1ab/nsp12529A529delGCA---33B.1.617.20.000011
ORF1ab/nsp12529A529VgCagTa33B.1.6210.000266
ORF1ab/nsp12529A529VgCagTa33B.1.9.50.017045
ORF1ab/nsp12529A529VgCagTa33N.50.0053
ORF1ab/nsp12529A529VgCagTa33R.10.00027
ORF1ab/nsp12529A529del1GCa-Ha220.111111
ORF1ab/nsp12529A529MGCAATG220.111111
ORF1ab/nsp12529A529delGCA---220.111111
ORF1ab/nsp12529A529SGcATcC120.055556
ORF1ab/nsp12529A529AgcAgcT120.055556
ORF1ab/nsp12529A529AgcAgcC120.055556
ORF1ab/nsp12529A529SGcaTca120.055556
ORF1ab/nsp12529A529VgCagTa22A0.000774
ORF1ab/nsp12529A529SGcaTca22A.2.40.006734
ORF1ab/nsp12529A529GgCagGa22All0
ORF1ab/nsp12529A529MGCAATG22All0
ORF1ab/nsp12529A529SGcaTca22AY.1020.000053
ORF1ab/nsp12529A529AgcAgcG12AY.1020.000027
ORF1ab/nsp12529A529AgcAgcT12AY.1020.000027
ORF1ab/nsp12529A529SGcaTca22AY.1180.000125
ORF1ab/nsp12529A529VgCagTa22AY.120.000632
ORF1ab/nsp12529A529SGcaTca22AY.1200.000074
ORF1ab/nsp12529A529VgCagTa22AY.23.10.000835
ORF1ab/nsp12529A529VgCagTa22AY.240.000862
ORF1ab/nsp12529A529delGCA---22AY.250.000012
ORF1ab/nsp12529A529VgCagTa22AY.29.10.000441
ORF1ab/nsp12529A529delGCA---22AY.30.00002
ORF1ab/nsp12529A529TGcaAca22AY.300.000791
ORF1ab/nsp12529A529AgcAgcG22AY.330.000134
ORF1ab/nsp12529A529SGcaTca22AY.390.000049
ORF1ab/nsp12529A529TGcaAca22AY.390.000049
ORF1ab/nsp12529A529VgCagTa22AY.39.10.000079
ORF1ab/nsp12529A529TGcaAca22AY.39.20.003082
ORF1ab/nsp12529A529VgCagTa22AY.4.10.001475
ORF1ab/nsp12529A529VgCagTa22AY.4.30.001684
ORF1ab/nsp12529A529LGCaCTa12AY.440.000006
ORF1ab/nsp12529A529IGCaATa12AY.440.000006
ORF1ab/nsp12529A529LGCACTC12AY.440.000006
ORF1ab/nsp12529A529IGCAATC12AY.440.000006
ORF1ab/nsp12529A529AgcAgcG22AY.50.000041
ORF1ab/nsp12529A529VgCagTa22AY.5.30.000675
ORF1ab/nsp12529A529VgCagTa22AY.550.001835
ORF1ab/nsp12529A529TGcaAca22AY.690.000373
ORF1ab/nsp12529A529VgCagTa22AY.690.000373
ORF1ab/nsp12529A529TGcaAca22AY.740.000231
ORF1ab/nsp12529A529VgCagTa22AY.90.000135
ORF1ab/nsp12529A529TGcaAca22AY.9.20.000073
ORF1ab/nsp12529A529delGCA---22B.10.000018
ORF1ab/nsp12529A529TGcaAca22B.1.10.000036
ORF1ab/nsp12529A529AgcAgcT22B.1.1.1530.002191
ORF1ab/nsp12529A529VgCagTa22B.1.1.2530.005013
ORF1ab/nsp12529A529VgCagTa22B.1.1.2630.003115
ORF1ab/nsp12529A529SGcaTca22B.1.1.280.000622
ORF1ab/nsp12529A529VgCagTa22B.1.1.2940.002532
ORF1ab/nsp12529A529VgCagTa22B.1.1.330.000842
ORF1ab/nsp12529A529VgCagTa22B.1.1.3350.025974
ORF1ab/nsp12529A529VgCagTa22B.1.1.370.000386
ORF1ab/nsp12529A529VgCagTa22B.1.1.3700.025316
ORF1ab/nsp12529A529VgCagTa22B.1.1.3720.001377
ORF1ab/nsp12529A529VgCagTa22B.1.1.4320.002532
ORF1ab/nsp12529A529SGcaTca22B.1.1.5190.000079
ORF1ab/nsp12529A529TGcaAca22B.1.1.5250.010929
ORF1ab/nsp12529A529SGcaTca22B.1.1600.000062
ORF1ab/nsp12529A529TGcaAca22B.1.1600.000062
ORF1ab/nsp12529A529EgCagAa22B.1.1770.000026
ORF1ab/nsp12529A529AgcAgcT22B.1.1770.000026
ORF1ab/nsp12529A529VgCagTa22B.1.177.210.000153
ORF1ab/nsp12529A529VgCagTa22B.1.177.730.001133
ORF1ab/nsp12529A529AgcAgcT22B.1.258.140.001961
ORF1ab/nsp12529A529VgCagTa22B.1.2600.006689
ORF1ab/nsp12529A529TGcaAca22B.1.3510.000059
ORF1ab/nsp12529A529VgCagTa22B.1.351.20.000605
ORF1ab/nsp12529A529VgCagTa22B.1.36.220.002415
ORF1ab/nsp12529A529TGcaAca22B.1.3810.015625
ORF1ab/nsp12529A529SGcaTca22B.1.4040.002604
ORF1ab/nsp12529A529VgCagTa22B.1.4090.001563
ORF1ab/nsp12529A529VgCagTa22B.1.4600.035714
ORF1ab/nsp12529A529VgCagTa22B.1.4620.014493
ORF1ab/nsp12529A529VgCagTa22B.1.466.20.000782
ORF1ab/nsp12529A529VgCagTa22B.1.5670.006667
ORF1ab/nsp12529A529VgCagTa22B.1.5730.012195
ORF1ab/nsp12529A529AgcAgcG22B.1.5750.000607
ORF1ab/nsp12529A529TGcaAca22B.1.5770.001375
ORF1ab/nsp12529A529VgCagTa22B.1.5820.000981
ORF1ab/nsp12529A529VgCagTa22B.1.6270.00404
ORF1ab/nsp12529A529VgCagTa22B.1.810.042553
ORF1ab/nsp12529A529TGcaAca22B.6.60.001778
ORF1ab/nsp12529A529SGcaTca22C.370.000232
ORF1ab/nsp12529A529TGcaAca22C.370.000232
ORF1ab/nsp12529A529VgCagTa22D.20.00015
ORF1ab/nsp12529A529delGCA---22P.10.000032
ORF1ab/nsp12529A529SGcaTca22P.10.000032
ORF1ab/nsp12529A529AgcAgcC22P.10.000032
ORF1ab/nsp12529A529TGcaAca22P.1.120.000968
ORF1ab/nsp12529A529VgCagTa22P.1.130.001797
ORF1ab/nsp12529A529AgcAgcG22P.1.140.000096
ORF1ab/nsp12529A529SGcaTca22P.1.170.000324
ORF1ab/nsp12529A529VgCagTa22P.40.007605
ORF1ab/nsp12529A529VgCagTa22Q.80.00033
ORF1ab/nsp12529A529AgcAgcT22R.10.00018
ORF1ab/nsp12529A529SGcaTca11A.2.30.004739
ORF1ab/nsp12529A529VgCagTa11A.23.10.000704
ORF1ab/nsp12529A529VgCagTa11A.270.001656
ORF1ab/nsp12529A529TGcaAca11A.30.002096
ORF1ab/nsp12529A529VgCagTa11AE.80.000489
ORF1ab/nsp12529A529XGCaTGa11All0
ORF1ab/nsp12529A529RGCaAGa11All0
ORF1ab/nsp12529A529VgCagTa11AU.10.001266
ORF1ab/nsp12529A529TGcaAca11AY.10.000396
ORF1ab/nsp12529A529VgCagTa11AY.100.00053
ORF1ab/nsp12529A529LGCaTTa11AY.1020.000027
ORF1ab/nsp12529A529AgcAgcG11AY.1050.000643
ORF1ab/nsp12529A529VgCagTa11AY.1050.000643
ORF1ab/nsp12529A529SGcaTca11AY.1060.000335
ORF1ab/nsp12529A529VgCagTa11AY.1080.001103
ORF1ab/nsp12529A529TGcaAca11AY.1100.000113
ORF1ab/nsp12529A529VgCagTa11AY.1130.000142
ORF1ab/nsp12529A529TGcaAca11AY.1130.000142
ORF1ab/nsp12529A529VgCagTa11AY.1160.000287
ORF1ab/nsp12529A529VgCagTa11AY.116.10.000311
ORF1ab/nsp12529A529AgcAgcC11AY.1180.000063
ORF1ab/nsp12529A529TGcaAca11AY.1190.000035
ORF1ab/nsp12529A529del1gcAgc-11AY.1190.000035
ORF1ab/nsp12529A529AgcAgcG11AY.1190.000035
ORF1ab/nsp12529A529SGcaTca11AY.1190.000035
ORF1ab/nsp12529A529SGcaTca11AY.120.000316
ORF1ab/nsp12529A529AgcAgcG11AY.120.10.000321
ORF1ab/nsp12529A529VgCagTa11AY.120.10.000321
ORF1ab/nsp12529A529VgCagTa11AY.120.20.001285
ORF1ab/nsp12529A529TGcaAca11AY.120.2.10.000498
ORF1ab/nsp12529A529TGcaAca11AY.1210.000135
ORF1ab/nsp12529A529TGcaAca11AY.130.000161
ORF1ab/nsp12529A529SGcaTca11AY.130.000161
ORF1ab/nsp12529A529VgCagTa11AY.140.000088
ORF1ab/nsp12529A529SGcaTca11AY.230.00007
ORF1ab/nsp12529A529SGcaTca11AY.240.000431
ORF1ab/nsp12529A529AgcAgcG11AY.250.000006
ORF1ab/nsp12529A529VgCagTa11AY.270.000065
ORF1ab/nsp12529A529AgcAgcG11AY.290.000016
ORF1ab/nsp12529A529TGcaAca11AY.320.000532
ORF1ab/nsp12529A529TGcaAca11AY.330.000067
ORF1ab/nsp12529A529SGcaTca11AY.340.000097
ORF1ab/nsp12529A529VgCagTa11AY.350.000233
ORF1ab/nsp12529A529TGcaAca11AY.360.000148
ORF1ab/nsp12529A529delGCA---11AY.370.000316
ORF1ab/nsp12529A529SGcaTca11AY.4.20.000022
ORF1ab/nsp12529A529AgcAgcG11AY.4.20.000022
ORF1ab/nsp12529A529TGcaAca11AY.4.30.000842
ORF1ab/nsp12529A529VgCagTa11AY.4.40.000409
ORF1ab/nsp12529A529TGcaAca11AY.4.50.000107
ORF1ab/nsp12529A529delGCA---11AY.420.00004
ORF1ab/nsp12529A529GgCagGa11AY.420.00004
ORF1ab/nsp12529A529EgCAgAG11AY.430.000004
ORF1ab/nsp12529A529PGcaCca11AY.440.000006
ORF1ab/nsp12529A529AgcAgcG11AY.450.000122
ORF1ab/nsp12529A529SGcaTca11AY.450.000122
ORF1ab/nsp12529A529SGcaTca11AY.460.000104
ORF1ab/nsp12529A529delGCA---11AY.460.000104
ORF1ab/nsp12529A529AgcAgcT11AY.460.000104
ORF1ab/nsp12529A529del1gcAgc-11AY.470.000031
ORF1ab/nsp12529A529AgcAgcG11AY.470.000031
ORF1ab/nsp12529A529VgCagTa11AY.480.000465
ORF1ab/nsp12529A529delGCA---11AY.50.000021
ORF1ab/nsp12529A529SGcaTca11AY.5.30.000337
ORF1ab/nsp12529A529TGcaAca11AY.5.40.000277
ORF1ab/nsp12529A529VgCagTa11AY.520.000814
ORF1ab/nsp12529A529TGcaAca11AY.520.000814
ORF1ab/nsp12529A529VgCagTa11AY.530.000288
ORF1ab/nsp12529A529TGcaAca11AY.530.000288
ORF1ab/nsp12529A529TGcaAca11AY.550.000917
ORF1ab/nsp12529A529VgCagTa11AY.590.00053
ORF1ab/nsp12529A529VgCagTa11AY.600.000938
ORF1ab/nsp12529A529VgCagTa11AY.610.000105
ORF1ab/nsp12529A529VgCagTa11AY.620.000436
ORF1ab/nsp12529A529VgCagTa11AY.630.000387
ORF1ab/nsp12529A529SGcaTca11AY.650.000533
ORF1ab/nsp12529A529delGCA---11AY.650.000533
ORF1ab/nsp12529A529VgCagTa11AY.680.000274
ORF1ab/nsp12529A529SGcaTca11AY.7.20.000559
ORF1ab/nsp12529A529VgCagTa11AY.700.000209
ORF1ab/nsp12529A529SGcaTca11AY.700.000209
ORF1ab/nsp12529A529SGcaTca11AY.740.000116
ORF1ab/nsp12529A529SGcaTca11AY.750.000056
ORF1ab/nsp12529A529delGCA---11AY.75.10.00018
ORF1ab/nsp12529A529VgCagTa11AY.820.001357
ORF1ab/nsp12529A529VgCagTa11AY.840.000437
ORF1ab/nsp12529A529delGCA---11AY.840.000437
ORF1ab/nsp12529A529VgCagTa11AY.880.000884
ORF1ab/nsp12529A529SGcaTca11AY.90.000068
ORF1ab/nsp12529A529AgcAgcG11AY.9.10.000084
ORF1ab/nsp12529A529delGCA---11AY.9.10.000084
ORF1ab/nsp12529A529del1gcAgc-11AY.9.20.000037
ORF1ab/nsp12529A529AgcAgcT11AY.9.20.000037
ORF1ab/nsp12529A529VgCagTa11AY.920.000287
ORF1ab/nsp12529A529VgCagTa11AY.950.000761
ORF1ab/nsp12529A529VgCagTa11AY.98.10.000048
ORF1ab/nsp12529A529TGcaAca11AY.990.001049
ORF1ab/nsp12529A529SGcaTca11AY.99.20.000092
ORF1ab/nsp12529A529EgCagAa11B.10.000009
ORF1ab/nsp12529A529GgCagGa11B.10.000009
ORF1ab/nsp12529A529LGCaTTa11B.1.10.000018
ORF1ab/nsp12529A529XGCaTGa11B.1.10.000018
ORF1ab/nsp12529A529PGcaCca11B.1.10.000018
ORF1ab/nsp12529A529RGCaAGa11B.1.10.000018
ORF1ab/nsp12529A529IGCaATa11B.1.10.000018
ORF1ab/nsp12529A529AgcAgcG11B.1.10.000018
ORF1ab/nsp12529A529VgCagTa11B.1.1.100.001115
ORF1ab/nsp12529A529VgCagTa11B.1.1.1170.009709
ORF1ab/nsp12529A529VgCagTa11B.1.1.1700.001247
ORF1ab/nsp12529A529VgCagTa11B.1.1.2070.001182
ORF1ab/nsp12529A529VgCagTa11B.1.1.2160.00089
ORF1ab/nsp12529A529delGCA---11B.1.1.2180.007692
ORF1ab/nsp12529A529del1gcAgc-11B.1.1.250.000569
ORF1ab/nsp12529A529VgCagTa11B.1.1.2770.000759
ORF1ab/nsp12529A529VgCagTa11B.1.1.2840.000107
ORF1ab/nsp12529A529VgCagTa11B.1.1.2910.000742
ORF1ab/nsp12529A529AgcAgcG11B.1.1.3040.002809
ORF1ab/nsp12529A529VgCagTa11B.1.1.3060.000438
ORF1ab/nsp12529A529VgCagTa11B.1.1.3110.000358
ORF1ab/nsp12529A529delGCA---11B.1.1.3110.000358
ORF1ab/nsp12529A529VgCagTa11B.1.1.3480.000796
ORF1ab/nsp12529A529TGcaAca11B.1.1.3680.003086
ORF1ab/nsp12529A529SGcaTca11B.1.1.370.000193
ORF1ab/nsp12529A529SGcaTca11B.1.1.3960.045455
ORF1ab/nsp12529A529VgCagTa11B.1.1.3970.002252
ORF1ab/nsp12529A529TGcaAca11B.1.1.4610.012048
ORF1ab/nsp12529A529VgCagTa11B.1.1.4640.001473
ORF1ab/nsp12529A529VgCagTa11B.1.1.4830.038462
ORF1ab/nsp12529A529AgcAgcG11B.1.1.5230.001563
ORF1ab/nsp12529A529VgCagTa11B.1.1.560.017857
ORF1ab/nsp12529A529LGCaTTa11B.1.1.70.000001
ORF1ab/nsp12529A529delGCA---11B.1.1.700.000341
ORF1ab/nsp12529A529TGcaAca11B.1.110.30.000718
ORF1ab/nsp12529A529VgCagTa11B.1.1260.001276
ORF1ab/nsp12529A529TGcaAca11B.1.1260.001276
ORF1ab/nsp12529A529VgCagTa11B.1.1570.002985
ORF1ab/nsp12529A529VgCagTa11B.1.160.110.005714
ORF1ab/nsp12529A529delGCA---11B.1.160.230.004831
ORF1ab/nsp12529A529delGCA---11B.1.160.70.002079
ORF1ab/nsp12529A529VgCagTa11B.1.177.180.00116
ORF1ab/nsp12529A529VgCagTa11B.1.177.320.00135
ORF1ab/nsp12529A529SGcaTca11B.1.177.40.000211
ORF1ab/nsp12529A529SGcaTca11B.1.177.420.000894
ORF1ab/nsp12529A529VgCagTa11B.1.177.440.000519
ORF1ab/nsp12529A529VgCagTa11B.1.177.480.003125
ORF1ab/nsp12529A529VgCagTa11B.1.177.500.004695
ORF1ab/nsp12529A529VgCagTa11B.1.177.570.000281
ORF1ab/nsp12529A529delGCA---11B.1.177.600.000218
ORF1ab/nsp12529A529delGCA---11B.1.177.680.015152
ORF1ab/nsp12529A529VgCagTa11B.1.177.70.000165
ORF1ab/nsp12529A529AgcAgcG11B.1.177.70.000165
ORF1ab/nsp12529A529SGcaTca11B.1.177.730.000566
ORF1ab/nsp12529A529VgCagTa11B.1.177.750.001041
ORF1ab/nsp12529A529delGCA---11B.1.177.760.002494
ORF1ab/nsp12529A529VgCagTa11B.1.177.830.001481
ORF1ab/nsp12529A529VgCagTa11B.1.177.850.005435
ORF1ab/nsp12529A529VgCagTa11B.1.177.860.000183
ORF1ab/nsp12529A529del1Gca-ca11B.1.177.870.000728
ORF1ab/nsp12529A529delGCA---11B.1.20.000009
ORF1ab/nsp12529A529SGcaTca11B.1.2100.002132
ORF1ab/nsp12529A529AgcAgcT11B.1.2120.016667
ORF1ab/nsp12529A529VgCagTa11B.1.214.20.0006
ORF1ab/nsp12529A529VgCagTa11B.1.2220.001692
ORF1ab/nsp12529A529VgCagTa11B.1.2400.000216
ORF1ab/nsp12529A529TGcaAca11B.1.2430.00007
ORF1ab/nsp12529A529TGcaAca11B.1.243.20.014493
ORF1ab/nsp12529A529SGcaTca11B.1.2580.000067
ORF1ab/nsp12529A529SGcaTca11B.1.258.220.002667
ORF1ab/nsp12529A529SGcaTca11B.1.2600.003344
ORF1ab/nsp12529A529VgCagTa11B.1.2700.005618
ORF1ab/nsp12529A529VgCagTa11B.1.2840.013158
ORF1ab/nsp12529A529VgCagTa11B.1.3110.000275
ORF1ab/nsp12529A529AgcAgcT11B.1.3110.000275
ORF1ab/nsp12529A529VgCagTa11B.1.3200.001245
ORF1ab/nsp12529A529TGcaAca11B.1.351.30.000876
ORF1ab/nsp12529A529VgCagTa11B.1.351.50.0006
ORF1ab/nsp12529A529VgCagTa11B.1.360.000146
ORF1ab/nsp12529A529VgCagTa11B.1.36.180.00042
ORF1ab/nsp12529A529VgCagTa11B.1.36.260.002857
ORF1ab/nsp12529A529VgCagTa11B.1.36.310.001751
ORF1ab/nsp12529A529TGcaAca11B.1.36.310.001751
ORF1ab/nsp12529A529VgCagTa11B.1.36.70.004
ORF1ab/nsp12529A529VgCagTa11B.1.3620.001541
ORF1ab/nsp12529A529VgCagTa11B.1.362.20.004717
ORF1ab/nsp12529A529VgCagTa11B.1.3910.001127
ORF1ab/nsp12529A529AgcAgcT11B.1.4080.00369
ORF1ab/nsp12529A529IGCAATC11B.1.4160.001269
ORF1ab/nsp12529A529VgCagTa11B.1.4160.001269
ORF1ab/nsp12529A529VgCagTa11B.1.4200.010417
ORF1ab/nsp12529A529AgcAgcC11B.1.4270.00005
ORF1ab/nsp12529A529SGcaTca11B.1.4590.004082
ORF1ab/nsp12529A529TGcaAca11B.1.466.20.000391
ORF1ab/nsp12529A529del1gCag-a11B.1.4680.005714
ORF1ab/nsp12529A529AgcAgcG11B.1.4680.005714
ORF1ab/nsp12529A529VgCagTa11B.1.4690.00361
ORF1ab/nsp12529A529VgCagTa11B.1.4970.000315
ORF1ab/nsp12529A529VgCagTa11B.1.5090.000866
ORF1ab/nsp12529A529EgCagAa11B.1.5150.014493
ORF1ab/nsp12529A529VgCagTa11B.1.5170.000427
ORF1ab/nsp12529A529VgCagTa11B.1.5250.000113
ORF1ab/nsp12529A529VgCagTa11B.1.5330.009615
ORF1ab/nsp12529A529VgCagTa11B.1.5600.00463
ORF1ab/nsp12529A529VgCagTa11B.1.5720.025
ORF1ab/nsp12529A529VgCagTa11B.1.5740.002151
ORF1ab/nsp12529A529SGcaTca11B.1.5810.009434
ORF1ab/nsp12529A529AgcAgcG11B.1.5820.000491
ORF1ab/nsp12529A529TGcaAca11B.1.5870.001898
ORF1ab/nsp12529A529VgCagTa11B.1.5950.000261
ORF1ab/nsp12529A529SGcaTca11B.1.5960.000087
ORF1ab/nsp12529A529VgCagTa11B.1.596.10.009346
ORF1ab/nsp12529A529VgCagTa11B.1.5970.00463
ORF1ab/nsp12529A529SGcaTca11B.1.617.10.000129
ORF1ab/nsp12529A529PGcaCca11B.1.617.20.000004
ORF1ab/nsp12529A529VgCagTa11B.1.6190.000871
ORF1ab/nsp12529A529AgcAgcC11B.1.6210.000089
ORF1ab/nsp12529A529TGcaAca11B.1.6370.000073
ORF1ab/nsp12529A529SGcaTca11B.290.003509
ORF1ab/nsp12529A529SGcaTca11B.400.000364
ORF1ab/nsp12529A529TGcaAca11B.470.020408
ORF1ab/nsp12529A529SGcaTca11B.60.00091
ORF1ab/nsp12529A529VgCagTa11C.140.004329
ORF1ab/nsp12529A529VgCagTa11C.180.002591
ORF1ab/nsp12529A529SGcaTca11D.20.000075
ORF1ab/nsp12529A529TGcaAca11P.1.140.000048
ORF1ab/nsp12529A529VgCagTa11P.1.150.000232
ORF1ab/nsp12529A529VgCagTa11P.1.170.000162
ORF1ab/nsp12529A529delGCA---11P.1.40.000977
ORF1ab/nsp12529A529VgCagTa11P.1.60.001946
ORF1ab/nsp12529A529AgcAgcG11P.60.003145
ORF1ab/nsp12529A529VgCagTa11Q.30.000145
ORF1ab/nsp12529A529delGCA---11Q.80.000165