CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 525

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12525D525DD4917DsyngaTgaC663663115013-15015
ORF1ab/nsp12525D525ND4917NnonsynGatAat2292260.986915013-15015
ORF1ab/nsp12525D525ND4917NnonsynGaTAaC22930.013100415013-15015
ORF1ab/nsp12525D525delD4917deldelGAT---4343115013-15015
ORF1ab/nsp12525D525YD4917YnonsynGatTat1414115013-15015
ORF1ab/nsp12525D525ED4917EnonsyngaTgaA1280.66666715013-15015
ORF1ab/nsp12525D525ED4917EnonsyngaTgaG1240.33333315013-15015
ORF1ab/nsp12525D525VD4917VnonsyngAtgTt860.7515013-15015
ORF1ab/nsp12525D525VD4917VnonsyngATgTA820.2515013-15015
ORF1ab/nsp12525D525AD4917AnonsyngAtgCt640.66666715013-15015
ORF1ab/nsp12525D525AD4917AnonsyngATgCA620.33333315013-15015
ORF1ab/nsp12525D525HD4917HnonsynGatCat530.615013-15015
ORF1ab/nsp12525D525HD4917HnonsynGaTCaC520.415013-15015
ORF1ab/nsp12525D525GD4917GnonsyngAtgGt44115013-15015
ORF1ab/nsp12525D525del1D4917del1delGat-at11115013-15015
ORF1ab/nsp12525D525CD4917CnonsynGAtTGt11115013-15015
ORF1ab/nsp12525D525ID4917InonsynGATATC11115013-15015

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12525D525DgaTgaC663663All0.000127
ORF1ab/nsp12525D525DgaTgaC337337B.1.1.70.000302
ORF1ab/nsp12525D525NGatAat226229All0.000043
ORF1ab/nsp12525D525NGaTAaC3229All0.000001
ORF1ab/nsp12525D525NGatAat167167AY.40.00026
ORF1ab/nsp12525D525DgaTgaC9595B.1.1770.001251
ORF1ab/nsp12525D525DgaTgaC5757C.40.57
ORF1ab/nsp12525D525delGAT---4343All0.000008
ORF1ab/nsp12525D525DgaTgaC2424B.1.1.4350.827586
ORF1ab/nsp12525D525NGatAat2222AY.250.000132
ORF1ab/nsp12525D525DgaTgaC1515AY.1170.001268
ORF1ab/nsp12525D525YGatTat1414All0.000003
ORF1ab/nsp12525D525NGatAat1313AY.9.20.000477
ORF1ab/nsp12525D525EgaTgaA812All0.000002
ORF1ab/nsp12525D525EgaTgaG412All0.000001
ORF1ab/nsp12525D525DgaTgaC1212B.1.1.2800.037037
ORF1ab/nsp12525D525DgaTgaC1111B.1.2390.013431
ORF1ab/nsp12525D525delGAT---1010B.1.1.70.000009
ORF1ab/nsp12525D525DgaTgaC1010B.1.617.20.000038
ORF1ab/nsp12525D525DgaTgaC99AY.440.000055
ORF1ab/nsp12525D525VgAtgTt68All0.000001
ORF1ab/nsp12525D525VgATgTA28All0
ORF1ab/nsp12525D525DgaTgaC88AY.250.000048
ORF1ab/nsp12525D525DgaTgaC77AY.1030.000043
ORF1ab/nsp12525D525DgaTgaC77AY.40.000011
ORF1ab/nsp12525D525DgaTgaC77B.10.000064
ORF1ab/nsp12525D525DgaTgaC77B.1.5680.007778
ORF1ab/nsp12525D525AgAtgCt46All0.000001
ORF1ab/nsp12525D525AgATgCA26All0
ORF1ab/nsp12525D525VgAtgTt350.166667
ORF1ab/nsp12525D525VgATgTA250.111111
ORF1ab/nsp12525D525HGatCat35All0.000001
ORF1ab/nsp12525D525HGaTCaC25All0
ORF1ab/nsp12525D525DgaTgaC55AY.390.000124
ORF1ab/nsp12525D525DgaTgaC55AY.430.000022
ORF1ab/nsp12525D525EgaTgaA45AY.440.000024
ORF1ab/nsp12525D525EgaTgaG15AY.440.000006
ORF1ab/nsp12525D525NGatAat45B.1.617.20.000015
ORF1ab/nsp12525D525NGaTAaC15B.1.617.20.000004
ORF1ab/nsp12525D525delGAT---440.222222
ORF1ab/nsp12525D525AgATgCA240.111111
ORF1ab/nsp12525D525AgAtgCt240.111111
ORF1ab/nsp12525D525GgAtgGt44All0.000001
ORF1ab/nsp12525D525NGatAat34AY.440.000018
ORF1ab/nsp12525D525NGaTAaC14AY.440.000006
ORF1ab/nsp12525D525DgaTgaC44B.1.10.000073
ORF1ab/nsp12525D525DgaTgaC44B.1.1.10.001307
ORF1ab/nsp12525D525NGatAat33AY.1030.000019
ORF1ab/nsp12525D525delGAT---33AY.1070.001398
ORF1ab/nsp12525D525DgaTgaC33AY.290.000047
ORF1ab/nsp12525D525YGatTat33B.10.000027
ORF1ab/nsp12525D525YGatTat33B.1.10.000054
ORF1ab/nsp12525D525delGAT---33B.1.10.000054
ORF1ab/nsp12525D525DgaTgaC33B.1.4270.000151
ORF1ab/nsp12525D525DgaTgaC33B.1.6370.000219
ORF1ab/nsp12525D525EgaTgaA220.111111
ORF1ab/nsp12525D525DgaTgaC220.111111
ORF1ab/nsp12525D525NGatAat22AY.1000.000092
ORF1ab/nsp12525D525NGatAat22AY.390.000049
ORF1ab/nsp12525D525delGAT---22AY.40.000003
ORF1ab/nsp12525D525delGAT---22AY.430.000009
ORF1ab/nsp12525D525DgaTgaC22AZ.60.016807
ORF1ab/nsp12525D525DgaTgaC22B.1.1.1700.002494
ORF1ab/nsp12525D525DgaTgaC22B.1.2210.000142
ORF1ab/nsp12525D525DgaTgaC22B.1.3510.000059
ORF1ab/nsp12525D525DgaTgaC22B.1.36.10.002281
ORF1ab/nsp12525D525DgaTgaC22C.370.000232
ORF1ab/nsp12525D525DgaTgaC22P.10.000032
ORF1ab/nsp12525D525delGAT---22P.10.000032
ORF1ab/nsp12525D525YGatTat11A0.000387
ORF1ab/nsp12525D525VgAtgTt11A.2.40.003367
ORF1ab/nsp12525D525DgaTgaC11AD.20.000219
ORF1ab/nsp12525D525del1Gat-at11All0
ORF1ab/nsp12525D525CGAtTGt11All0
ORF1ab/nsp12525D525IGATATC11All0
ORF1ab/nsp12525D525DgaTgaC11AY.1000.000046
ORF1ab/nsp12525D525NGatAat11AY.1020.000027
ORF1ab/nsp12525D525DgaTgaC11AY.1100.000113
ORF1ab/nsp12525D525NGatAat11AY.1170.000085
ORF1ab/nsp12525D525DgaTgaC11AY.1190.000035
ORF1ab/nsp12525D525delGAT---11AY.250.000006
ORF1ab/nsp12525D525HGatCat11AY.250.000006
ORF1ab/nsp12525D525NGatAat11AY.290.000016
ORF1ab/nsp12525D525NGatAat11AY.30.00001
ORF1ab/nsp12525D525GgAtgGt11AY.30.00001
ORF1ab/nsp12525D525GgAtgGt11AY.390.000025
ORF1ab/nsp12525D525DgaTgaC11AY.39.10.00004
ORF1ab/nsp12525D525GgAtgGt11AY.40.000002
ORF1ab/nsp12525D525YGatTat11AY.4.40.000409
ORF1ab/nsp12525D525AgAtgCt11AY.420.00004
ORF1ab/nsp12525D525delGAT---11AY.420.00004
ORF1ab/nsp12525D525HGaTCaC11AY.430.000004
ORF1ab/nsp12525D525delGAT---11AY.440.000006
ORF1ab/nsp12525D525VgAtgTt11AY.440.000006
ORF1ab/nsp12525D525NGatAat11AY.50.000021
ORF1ab/nsp12525D525AgAtgCt11AY.510.000909
ORF1ab/nsp12525D525EgaTgaA11AY.540.000095
ORF1ab/nsp12525D525delGAT---11AY.650.000533
ORF1ab/nsp12525D525delGAT---11AY.670.000464
ORF1ab/nsp12525D525DgaTgaC11AY.750.000056
ORF1ab/nsp12525D525CGAtTGt11AY.750.000056
ORF1ab/nsp12525D525DgaTgaC11AY.75.10.00018
ORF1ab/nsp12525D525HGaTCaC11AY.840.000437
ORF1ab/nsp12525D525NGatAat11AY.850.000427
ORF1ab/nsp12525D525delGAT---11AY.990.001049
ORF1ab/nsp12525D525NGatAat11B.10.000009
ORF1ab/nsp12525D525NGatAat11B.1.10.000018
ORF1ab/nsp12525D525HGatCat11B.1.1.1980.001468
ORF1ab/nsp12525D525delGAT---11B.1.1.3060.000438
ORF1ab/nsp12525D525del1Gat-at11B.1.1.3060.000438
ORF1ab/nsp12525D525delGAT---11B.1.1.3110.000358
ORF1ab/nsp12525D525EgaTgaG11B.1.1.3690.000446
ORF1ab/nsp12525D525DgaTgaC11B.1.1.3720.000689
ORF1ab/nsp12525D525YGatTat11B.1.1.70.000001
ORF1ab/nsp12525D525delGAT---11B.1.1.700.000341
ORF1ab/nsp12525D525delGAT---11B.1.160.230.004831
ORF1ab/nsp12525D525delGAT---11B.1.160.70.002079
ORF1ab/nsp12525D525DgaTgaC11B.1.160.90.007194
ORF1ab/nsp12525D525DgaTgaC11B.1.177.480.003125
ORF1ab/nsp12525D525EgaTgaG11B.1.177.480.003125
ORF1ab/nsp12525D525delGAT---11B.1.177.600.000218
ORF1ab/nsp12525D525delGAT---11B.1.177.680.015152
ORF1ab/nsp12525D525delGAT---11B.1.177.760.002494
ORF1ab/nsp12525D525delGAT---11B.1.177.870.000728
ORF1ab/nsp12525D525DgaTgaC11B.1.20.000009
ORF1ab/nsp12525D525DgaTgaC11B.1.2360.002053
ORF1ab/nsp12525D525YGatTat11B.1.3510.00003
ORF1ab/nsp12525D525DgaTgaC11B.1.3670.000792
ORF1ab/nsp12525D525VgAtgTt11B.1.4160.001269
ORF1ab/nsp12525D525DgaTgaC11B.1.4290.000024
ORF1ab/nsp12525D525YGatTat11B.1.4290.000024
ORF1ab/nsp12525D525NGatAat11B.1.4290.000024
ORF1ab/nsp12525D525NGatAat11B.1.466.20.000391
ORF1ab/nsp12525D525EgaTgaG11B.1.5250.000113
ORF1ab/nsp12525D525HGatCat11B.1.5610.000397
ORF1ab/nsp12525D525NGaTAaC11B.1.5680.001111
ORF1ab/nsp12525D525GgAtgGt11B.1.5950.000261
ORF1ab/nsp12525D525IGATATC11B.1.617.20.000004
ORF1ab/nsp12525D525YGatTat11B.1.617.20.000004
ORF1ab/nsp12525D525EgaTgaA11B.6.60.000889
ORF1ab/nsp12525D525YGatTat11D.20.000075
ORF1ab/nsp12525D525YGatTat11P.10.000016
ORF1ab/nsp12525D525delGAT---11P.1.40.000977
ORF1ab/nsp12525D525delGAT---11Q.80.000165