CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 524

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12524Q524QQ4916QsyncaAcaG23462346115010-15012
ORF1ab/nsp12524Q524delQ4916deldelCAA---4242115010-15012
ORF1ab/nsp12524Q524KQ4916KnonsynCaaAaa3939115010-15012
ORF1ab/nsp12524Q524XQ4916XnonsynCaaTaa3131115010-15012
ORF1ab/nsp12524Q524LQ4916LnonsyncAacTa16140.87515010-15012
ORF1ab/nsp12524Q524HQ4916HnonsyncaAcaT16110.687515010-15012
ORF1ab/nsp12524Q524HQ4916HnonsyncaAcaC1650.312515010-15012
ORF1ab/nsp12524Q524LQ4916LnonsyncAAcTC1610.062515010-15012
ORF1ab/nsp12524Q524LQ4916LnonsynCAaTTa1610.062515010-15012
ORF1ab/nsp12524Q524del1Q4916del1delcAac-a630.515010-15012
ORF1ab/nsp12524Q524del1Q4916del1delCaa-aa620.33333315010-15012
ORF1ab/nsp12524Q524del1Q4916del1delcaAca-610.16666715010-15012
ORF1ab/nsp12524Q524RQ4916RnonsyncAacGa55115010-15012
ORF1ab/nsp12524Q524PQ4916PnonsyncAacCa22115010-15012
ORF1ab/nsp12524Q524NQ4916NnonsynCaAAaT22115010-15012
ORF1ab/nsp12524Q524EQ4916EnonsynCaaGaa22115010-15012
ORF1ab/nsp12524Q524del2Q4916del2delcAAc--11115010-15012
ORF1ab/nsp12524Q524FQ4916FnonsynCAATTC11115010-15012
ORF1ab/nsp12524Q524YQ4916YnonsynCaATaC11115010-15012

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12524Q524QcaAcaG23462346All0.000449
ORF1ab/nsp12524Q524QcaAcaG21182118AY.1070.986952
ORF1ab/nsp12524Q524QcaAcaG122122B.1.617.20.000459
ORF1ab/nsp12524Q524delCAA---4242All0.000008
ORF1ab/nsp12524Q524KCaaAaa3939All0.000007
ORF1ab/nsp12524Q524XCaaTaa3131All0.000006
ORF1ab/nsp12524Q524QcaAcaG2424B.1.1.70.000021
ORF1ab/nsp12524Q524KCaaAaa2121AY.40.000033
ORF1ab/nsp12524Q524LcAacTa1416All0.000003
ORF1ab/nsp12524Q524HcaAcaT1116All0.000002
ORF1ab/nsp12524Q524HcaAcaC516All0.000001
ORF1ab/nsp12524Q524LCAaTTa116All0
ORF1ab/nsp12524Q524LcAAcTC116All0
ORF1ab/nsp12524Q524delCAA---99B.1.1.70.000008
ORF1ab/nsp12524Q524QcaAcaG77AY.1170.000592
ORF1ab/nsp12524Q524QcaAcaG77AY.250.000042
ORF1ab/nsp12524Q524QcaAcaG77AY.50.000145
ORF1ab/nsp12524Q524del1cAac-a36All0.000001
ORF1ab/nsp12524Q524del1Caa-aa26All0
ORF1ab/nsp12524Q524del1caAca-16All0
ORF1ab/nsp12524Q524QcaAcaG66AY.920.001724
ORF1ab/nsp12524Q524XCaaTaa66B.10.000055
ORF1ab/nsp12524Q524XCaaTaa66B.1.1.70.000005
ORF1ab/nsp12524Q524RcAacGa55All0.000001
ORF1ab/nsp12524Q524QcaAcaG55AY.430.000022
ORF1ab/nsp12524Q524delCAA---440.222222
ORF1ab/nsp12524Q524KCaaAaa44AY.290.000063
ORF1ab/nsp12524Q524KCaaAaa330.166667
ORF1ab/nsp12524Q524delCAA---33AY.1070.001398
ORF1ab/nsp12524Q524QcaAcaG33AY.230.000209
ORF1ab/nsp12524Q524QcaAcaG33AY.5.30.001012
ORF1ab/nsp12524Q524LcAacTa33B.10.000027
ORF1ab/nsp12524Q524HcaAcaT33B.10.000027
ORF1ab/nsp12524Q524delCAA---33B.1.10.000054
ORF1ab/nsp12524Q524QcaAcaG33B.1.20.000026
ORF1ab/nsp12524Q524XCaaTaa33B.1.2580.0002
ORF1ab/nsp12524Q524ECaaGaa22All0
ORF1ab/nsp12524Q524NCaAAaT22All0
ORF1ab/nsp12524Q524PcAacCa22All0
ORF1ab/nsp12524Q524QcaAcaG22AY.1020.000053
ORF1ab/nsp12524Q524QcaAcaG22AY.1030.000012
ORF1ab/nsp12524Q524QcaAcaG22AY.1110.000366
ORF1ab/nsp12524Q524QcaAcaG22AY.1130.000285
ORF1ab/nsp12524Q524KCaaAaa22AY.200.000078
ORF1ab/nsp12524Q524QcaAcaG22AY.360.000296
ORF1ab/nsp12524Q524QcaAcaG22AY.390.000049
ORF1ab/nsp12524Q524LcAacTa22AY.40.000003
ORF1ab/nsp12524Q524QcaAcaG22AY.40.000003
ORF1ab/nsp12524Q524delCAA---22AY.40.000003
ORF1ab/nsp12524Q524LcAacTa22AY.440.000012
ORF1ab/nsp12524Q524QcaAcaG22AY.450.000243
ORF1ab/nsp12524Q524QcaAcaG22AY.840.000875
ORF1ab/nsp12524Q524LcAacTa22AY.840.000875
ORF1ab/nsp12524Q524QcaAcaG22AY.910.001461
ORF1ab/nsp12524Q524QcaAcaG22AY.950.001522
ORF1ab/nsp12524Q524XCaaTaa22B.1.10.000036
ORF1ab/nsp12524Q524LcAacTa22B.1.1.70.000002
ORF1ab/nsp12524Q524del1caAca-12B.1.1.70.000001
ORF1ab/nsp12524Q524del1Caa-aa12B.1.1.70.000001
ORF1ab/nsp12524Q524KCaaAaa22B.1.617.20.000008
ORF1ab/nsp12524Q524delCAA---22P.10.000032
ORF1ab/nsp12524Q524XCaaTaa110.055556
ORF1ab/nsp12524Q524FCAATTC11All0
ORF1ab/nsp12524Q524del2cAAc--11All0
ORF1ab/nsp12524Q524YCaATaC11All0
ORF1ab/nsp12524Q524XCaaTaa11AY.1020.000027
ORF1ab/nsp12524Q524NCaAAaT11AY.1030.000006
ORF1ab/nsp12524Q524XCaaTaa11AY.1030.000006
ORF1ab/nsp12524Q524HcaAcaT11AY.1030.000006
ORF1ab/nsp12524Q524KCaaAaa11AY.1030.000006
ORF1ab/nsp12524Q524QcaAcaG11AY.1180.000063
ORF1ab/nsp12524Q524QcaAcaG11AY.1190.000035
ORF1ab/nsp12524Q524QcaAcaG11AY.140.000088
ORF1ab/nsp12524Q524KCaaAaa11AY.16.10.00047
ORF1ab/nsp12524Q524delCAA---11AY.250.000006
ORF1ab/nsp12524Q524del1cAac-a11AY.250.000006
ORF1ab/nsp12524Q524HcaAcaT11AY.260.000028
ORF1ab/nsp12524Q524QcaAcaG11AY.290.000016
ORF1ab/nsp12524Q524LcAAcTC11AY.30.00001
ORF1ab/nsp12524Q524QcaAcaG11AY.30.00001
ORF1ab/nsp12524Q524KCaaAaa11AY.330.000067
ORF1ab/nsp12524Q524HcaAcaT11AY.40.000002
ORF1ab/nsp12524Q524QcaAcaG11AY.420.00004
ORF1ab/nsp12524Q524LcAacTa11AY.420.00004
ORF1ab/nsp12524Q524delCAA---11AY.420.00004
ORF1ab/nsp12524Q524delCAA---11AY.430.000004
ORF1ab/nsp12524Q524HcaAcaT11AY.430.000004
ORF1ab/nsp12524Q524XCaaTaa11AY.430.000004
ORF1ab/nsp12524Q524del2cAAc--11AY.430.000004
ORF1ab/nsp12524Q524LCAaTTa11AY.430.000004
ORF1ab/nsp12524Q524KCaaAaa11AY.440.000006
ORF1ab/nsp12524Q524delCAA---11AY.440.000006
ORF1ab/nsp12524Q524HcaAcaC11AY.440.000006
ORF1ab/nsp12524Q524XCaaTaa11AY.440.000006
ORF1ab/nsp12524Q524XCaaTaa11AY.460.000104
ORF1ab/nsp12524Q524QcaAcaG11AY.46.60.000072
ORF1ab/nsp12524Q524QcaAcaG11AY.550.000917
ORF1ab/nsp12524Q524QcaAcaG11AY.580.000907
ORF1ab/nsp12524Q524delCAA---11AY.650.000533
ORF1ab/nsp12524Q524delCAA---11AY.670.000464
ORF1ab/nsp12524Q524RcAacGa11AY.680.000274
ORF1ab/nsp12524Q524XCaaTaa11AY.70.000196
ORF1ab/nsp12524Q524QcaAcaG11AY.750.000056
ORF1ab/nsp12524Q524QcaAcaG11AY.9.10.000084
ORF1ab/nsp12524Q524HcaAcaT11AY.9.20.000037
ORF1ab/nsp12524Q524RcAacGa11AY.9.20.000037
ORF1ab/nsp12524Q524QcaAcaG11AY.990.001049
ORF1ab/nsp12524Q524delCAA---11AY.990.001049
ORF1ab/nsp12524Q524XCaaTaa11B0.000128
ORF1ab/nsp12524Q524KCaaAaa11B.10.000009
ORF1ab/nsp12524Q524ECaaGaa11B.10.000009
ORF1ab/nsp12524Q524FCAATTC11B.1.10.000018
ORF1ab/nsp12524Q524YCaATaC11B.1.10.000018
ORF1ab/nsp12524Q524KCaaAaa11B.1.10.000018
ORF1ab/nsp12524Q524HcaAcaC11B.1.10.000018
ORF1ab/nsp12524Q524QcaAcaG11B.1.10.000018
ORF1ab/nsp12524Q524LcAacTa11B.1.1.1650.015385
ORF1ab/nsp12524Q524RcAacGa11B.1.1.1740.003378
ORF1ab/nsp12524Q524XCaaTaa11B.1.1.2220.000204
ORF1ab/nsp12524Q524delCAA---11B.1.1.3060.000438
ORF1ab/nsp12524Q524delCAA---11B.1.1.3110.000358
ORF1ab/nsp12524Q524QcaAcaG11B.1.1.330.000421
ORF1ab/nsp12524Q524XCaaTaa11B.1.1.390.00051
ORF1ab/nsp12524Q524QcaAcaG11B.1.1.5190.00004
ORF1ab/nsp12524Q524HcaAcaT11B.1.1.70.000001
ORF1ab/nsp12524Q524ECaaGaa11B.1.1.70.000001
ORF1ab/nsp12524Q524delCAA---11B.1.1.700.000341
ORF1ab/nsp12524Q524delCAA---11B.1.160.230.004831
ORF1ab/nsp12524Q524delCAA---11B.1.160.70.002079
ORF1ab/nsp12524Q524RcAacGa11B.1.1770.000013
ORF1ab/nsp12524Q524HcaAcaC11B.1.1770.000013
ORF1ab/nsp12524Q524delCAA---11B.1.177.600.000218
ORF1ab/nsp12524Q524delCAA---11B.1.177.680.015152
ORF1ab/nsp12524Q524delCAA---11B.1.177.760.002494
ORF1ab/nsp12524Q524delCAA---11B.1.177.870.000728
ORF1ab/nsp12524Q524delCAA---11B.1.177.90.001332
ORF1ab/nsp12524Q524del1cAac-a11B.1.20.000009
ORF1ab/nsp12524Q524XCaaTaa11B.1.20.000009
ORF1ab/nsp12524Q524XCaaTaa11B.1.2200.01087
ORF1ab/nsp12524Q524QcaAcaG11B.1.2580.000067
ORF1ab/nsp12524Q524PcAacCa11B.1.2580.000067
ORF1ab/nsp12524Q524HcaAcaC11B.1.258.170.000104
ORF1ab/nsp12524Q524RcAacGa11B.1.360.000146
ORF1ab/nsp12524Q524HcaAcaC11B.1.4160.001269
ORF1ab/nsp12524Q524QcaAcaG11B.1.4270.00005
ORF1ab/nsp12524Q524QcaAcaG11B.1.5260.000024
ORF1ab/nsp12524Q524LcAacTa11B.1.5680.001111
ORF1ab/nsp12524Q524del1Caa-aa11B.1.5950.000261
ORF1ab/nsp12524Q524HcaAcaT11B.1.617.20.000004
ORF1ab/nsp12524Q524XCaaTaa11B.1.617.20.000004
ORF1ab/nsp12524Q524del1cAac-a11B.1.617.20.000004
ORF1ab/nsp12524Q524NCaAAaT11B.1.617.20.000004
ORF1ab/nsp12524Q524PcAacCa11B.6.60.000889
ORF1ab/nsp12524Q524XCaaTaa11D.20.000075
ORF1ab/nsp12524Q524KCaaAaa11D.20.000075
ORF1ab/nsp12524Q524HcaAcaT11P.10.000016
ORF1ab/nsp12524Q524QcaAcaG11P.10.000016
ORF1ab/nsp12524Q524delCAA---11P.1.40.000977
ORF1ab/nsp12524Q524delCAA---11Q.80.000165