CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 500

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12500K500KK4892KsynaaAaaG344344114938-14940
ORF1ab/nsp12500K500delK4892deldelAAA---3939114938-14940
ORF1ab/nsp12500K500RK4892RnonsynaAaaGa20190.9514938-14940
ORF1ab/nsp12500K500RK4892RnonsynaAAaGG2010.0514938-14940
ORF1ab/nsp12500K500del1K4892del1delAaa-aa1060.614938-14940
ORF1ab/nsp12500K500del1K4892del1delaAAaG-1020.214938-14940
ORF1ab/nsp12500K500del1K4892del1delaaAaa-1010.114938-14940
ORF1ab/nsp12500K500del1K4892del1delAAA-NN1010.114938-14940
ORF1ab/nsp12500K500TK4892TnonsynaAaaCa77114938-14940
ORF1ab/nsp12500K500IK4892InonsynaAaaTa640.66666714938-14940
ORF1ab/nsp12500K500IK4892InonsynaAAaTC620.33333314938-14940
ORF1ab/nsp12500K500NK4892NnonsynaaAaaC530.614938-14940
ORF1ab/nsp12500K500NK4892NnonsynaaAaaT520.414938-14940
ORF1ab/nsp12500K500LK4892LnonsynAAaCTa320.66666714938-14940
ORF1ab/nsp12500K500LK4892LnonsynAAaTTa310.33333314938-14940
ORF1ab/nsp12500K500MK4892MnonsynaAAaTG22114938-14940
ORF1ab/nsp12500K500DK4892DnonsynAaAGaC11114938-14940
ORF1ab/nsp12500K500del2K4892del2delAAa--a11114938-14940

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12500K500KaaAaaG344344All0.000066
ORF1ab/nsp12500K500KaaAaaG8686B.10.000788
ORF1ab/nsp12500K500KaaAaaG6363B.1.1.70.000056
ORF1ab/nsp12500K500KaaAaaG4343B.201
ORF1ab/nsp12500K500delAAA---3939All0.000007
ORF1ab/nsp12500K500RaAaaGa1920All0.000004
ORF1ab/nsp12500K500RaAAaGG120All0
ORF1ab/nsp12500K500KaaAaaG2020B.1.617.20.000075
ORF1ab/nsp12500K500KaaAaaG1414AY.610.001467
ORF1ab/nsp12500K500del1Aaa-aa610All0.000001
ORF1ab/nsp12500K500del1aAAaG-210All0
ORF1ab/nsp12500K500del1aaAaa-110All0
ORF1ab/nsp12500K500del1AAA-NN110All0
ORF1ab/nsp12500K500delAAA---1010B.1.1.70.000009
ORF1ab/nsp12500K500KaaAaaG88AY.1030.00005
ORF1ab/nsp12500K500TaAaaCa77All0.000001
ORF1ab/nsp12500K500KaaAaaG77AY.430.000031
ORF1ab/nsp12500K500KaaAaaG77AY.750.000392
ORF1ab/nsp12500K500IaAaaTa46All0.000001
ORF1ab/nsp12500K500IaAAaTC26All0
ORF1ab/nsp12500K500KaaAaaG66AY.260.00017
ORF1ab/nsp12500K500NaaAaaC35All0.000001
ORF1ab/nsp12500K500NaaAaaT25All0
ORF1ab/nsp12500K500KaaAaaG55AY.40.000008
ORF1ab/nsp12500K500RaAaaGa44AY.1030.000025
ORF1ab/nsp12500K500KaaAaaG44AY.250.000024
ORF1ab/nsp12500K500KaaAaaG44AY.30.00004
ORF1ab/nsp12500K500RaAaaGa44B.1.1.70.000004
ORF1ab/nsp12500K500LAAaCTa23All0
ORF1ab/nsp12500K500LAAaTTa13All0
ORF1ab/nsp12500K500KaaAaaG33AY.1190.000106
ORF1ab/nsp12500K500KaaAaaG33AY.690.00056
ORF1ab/nsp12500K500KaaAaaG33B.1.10.000054
ORF1ab/nsp12500K500KaaAaaG33B.1.1600.000094
ORF1ab/nsp12500K500KaaAaaG33B.1.20.000026
ORF1ab/nsp12500K500KaaAaaG33B.1.4290.000071
ORF1ab/nsp12500K500KaaAaaG33B.1.5260.000071
ORF1ab/nsp12500K500KaaAaaG33B.1.6370.000219
ORF1ab/nsp12500K500MaAAaTG220.111111
ORF1ab/nsp12500K500LAAaCTa220.111111
ORF1ab/nsp12500K500del1aAAaG-220.111111
ORF1ab/nsp12500K500TaAaaCa220.111111
ORF1ab/nsp12500K500MaAAaTG22All0
ORF1ab/nsp12500K500KaaAaaG22AY.1020.000053
ORF1ab/nsp12500K500RaAaaGa22AY.1020.000053
ORF1ab/nsp12500K500delAAA---22AY.430.000009
ORF1ab/nsp12500K500del1Aaa-aa22B.10.000018
ORF1ab/nsp12500K500delAAA---22B.1.10.000036
ORF1ab/nsp12500K500KaaAaaG22B.1.1.390.001019
ORF1ab/nsp12500K500KaaAaaG22B.1.1770.000026
ORF1ab/nsp12500K500del1Aaa-aa22B.1.20.000018
ORF1ab/nsp12500K500KaaAaaG22B.1.258.170.000208
ORF1ab/nsp12500K500KaaAaaG22B.1.3510.000059
ORF1ab/nsp12500K500KaaAaaG22B.1.4270.000101
ORF1ab/nsp12500K500KaaAaaG22B.1.5970.009259
ORF1ab/nsp12500K500KaaAaaG22C.260.014706
ORF1ab/nsp12500K500delAAA---22P.10.000032
ORF1ab/nsp12500K500KaaAaaG11A.10.000282
ORF1ab/nsp12500K500NaaAaaT11A.2.40.003367
ORF1ab/nsp12500K500del2AAa--a11All0
ORF1ab/nsp12500K500DAaAGaC11All0
ORF1ab/nsp12500K500delAAA---11AY.1070.000466
ORF1ab/nsp12500K500KaaAaaG11AY.1130.000142
ORF1ab/nsp12500K500KaaAaaG11AY.1160.000287
ORF1ab/nsp12500K500KaaAaaG11AY.1210.000135
ORF1ab/nsp12500K500KaaAaaG11AY.130.000161
ORF1ab/nsp12500K500KaaAaaG11AY.140.000088
ORF1ab/nsp12500K500KaaAaaG11AY.16.10.00047
ORF1ab/nsp12500K500RaAaaGa11AY.230.00007
ORF1ab/nsp12500K500KaaAaaG11AY.230.00007
ORF1ab/nsp12500K500delAAA---11AY.250.000006
ORF1ab/nsp12500K500RaAaaGa11AY.260.000028
ORF1ab/nsp12500K500RaAaaGa11AY.30.00001
ORF1ab/nsp12500K500delAAA---11AY.30.00001
ORF1ab/nsp12500K500delAAA---11AY.350.000233
ORF1ab/nsp12500K500KaaAaaG11AY.360.000148
ORF1ab/nsp12500K500delAAA---11AY.380.000499
ORF1ab/nsp12500K500KaaAaaG11AY.390.000025
ORF1ab/nsp12500K500KaaAaaG11AY.4.20.000022
ORF1ab/nsp12500K500delAAA---11AY.4.50.000107
ORF1ab/nsp12500K500delAAA---11AY.420.00004
ORF1ab/nsp12500K500IaAAaTC11AY.430.000004
ORF1ab/nsp12500K500DAaAGaC11AY.430.000004
ORF1ab/nsp12500K500TaAaaCa11AY.430.000004
ORF1ab/nsp12500K500RaAaaGa11AY.430.000004
ORF1ab/nsp12500K500NaaAaaT11AY.430.000004
ORF1ab/nsp12500K500RaAaaGa11AY.440.000006
ORF1ab/nsp12500K500NaaAaaC11AY.440.000006
ORF1ab/nsp12500K500delAAA---11AY.440.000006
ORF1ab/nsp12500K500KaaAaaG11AY.450.000122
ORF1ab/nsp12500K500delAAA---11AY.460.000104
ORF1ab/nsp12500K500KaaAaaG11AY.46.30.000934
ORF1ab/nsp12500K500KaaAaaG11AY.50.000021
ORF1ab/nsp12500K500KaaAaaG11AY.650.000533
ORF1ab/nsp12500K500LAAaTTa11AY.670.000464
ORF1ab/nsp12500K500KaaAaaG11AY.75.10.00018
ORF1ab/nsp12500K500KaaAaaG11AY.780.001541
ORF1ab/nsp12500K500RaAAaGG11AY.840.000437
ORF1ab/nsp12500K500del2AAa--a11AY.90.000068
ORF1ab/nsp12500K500KaaAaaG11AY.9.10.000084
ORF1ab/nsp12500K500delAAA---11AY.990.001049
ORF1ab/nsp12500K500delAAA---11AY.99.10.001553
ORF1ab/nsp12500K500NaaAaaC11B.10.000009
ORF1ab/nsp12500K500TaAaaCa11B.10.000009
ORF1ab/nsp12500K500RaAaaGa11B.10.000009
ORF1ab/nsp12500K500delAAA---11B.10.000009
ORF1ab/nsp12500K500del1AAA-NN11B.1.10.000018
ORF1ab/nsp12500K500IaAAaTC11B.1.10.000018
ORF1ab/nsp12500K500KaaAaaG11B.1.1.100.001115
ORF1ab/nsp12500K500KaaAaaG11B.1.1.1410.002012
ORF1ab/nsp12500K500delAAA---11B.1.1.1590.004673
ORF1ab/nsp12500K500KaaAaaG11B.1.1.1610.003534
ORF1ab/nsp12500K500IaAaaTa11B.1.1.1740.003378
ORF1ab/nsp12500K500delAAA---11B.1.1.250.000569
ORF1ab/nsp12500K500delAAA---11B.1.1.3060.000438
ORF1ab/nsp12500K500KaaAaaG11B.1.1.3110.000358
ORF1ab/nsp12500K500RaAaaGa11B.1.1.390.00051
ORF1ab/nsp12500K500KaaAaaG11B.1.1.5230.001563
ORF1ab/nsp12500K500KaaAaaG11B.1.1.630.000386
ORF1ab/nsp12500K500NaaAaaC11B.1.1.70.000001
ORF1ab/nsp12500K500IaAaaTa11B.1.1.70.000001
ORF1ab/nsp12500K500del1aaAaa-11B.1.1.70.000001
ORF1ab/nsp12500K500delAAA---11B.1.160.230.004831
ORF1ab/nsp12500K500delAAA---11B.1.1770.000013
ORF1ab/nsp12500K500KaaAaaG11B.1.177.440.000519
ORF1ab/nsp12500K500delAAA---11B.1.177.680.015152
ORF1ab/nsp12500K500delAAA---11B.1.177.760.002494
ORF1ab/nsp12500K500KaaAaaG11B.1.177.850.005435
ORF1ab/nsp12500K500TaAaaCa11B.1.177.90.001332
ORF1ab/nsp12500K500IaAaaTa11B.1.20.000009
ORF1ab/nsp12500K500KaaAaaG11B.1.2360.002053
ORF1ab/nsp12500K500delAAA---11B.1.2580.000067
ORF1ab/nsp12500K500KaaAaaG11B.1.3560.001727
ORF1ab/nsp12500K500RaAaaGa11B.1.36.290.000517
ORF1ab/nsp12500K500KaaAaaG11B.1.36.310.001751
ORF1ab/nsp12500K500KaaAaaG11B.1.3610.001289
ORF1ab/nsp12500K500KaaAaaG11B.1.3800.006623
ORF1ab/nsp12500K500del1Aaa-aa11B.1.3960.000706
ORF1ab/nsp12500K500TaAaaCa11B.1.4160.001269
ORF1ab/nsp12500K500IaAaaTa11B.1.4290.000024
ORF1ab/nsp12500K500KaaAaaG11B.1.4590.004082
ORF1ab/nsp12500K500KaaAaaG11B.1.5230.002451
ORF1ab/nsp12500K500KaaAaaG11B.1.5960.000087
ORF1ab/nsp12500K500KaaAaaG11B.1.6090.000479
ORF1ab/nsp12500K500RaAaaGa11B.1.617.20.000004
ORF1ab/nsp12500K500TaAaaCa11B.1.617.20.000004
ORF1ab/nsp12500K500delAAA---11B.130.045455
ORF1ab/nsp12500K500delAAA---11C.360.000911
ORF1ab/nsp12500K500KaaAaaG11C.36.3.10.002717
ORF1ab/nsp12500K500KaaAaaG11P.10.000016
ORF1ab/nsp12500K500del1Aaa-aa11P.10.000016
ORF1ab/nsp12500K500delAAA---11P.1.40.000977