CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 499 | D499D | D4891D | syn | gaC | gaT | 5157 | 5157 | 1 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499N | D4891N | nonsyn | Gac | Aac | 167 | 167 | 1 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499E | D4891E | nonsyn | gaC | gaA | 85 | 84 | 0.988235 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499E | D4891E | nonsyn | gaC | gaG | 85 | 1 | 0.0117647 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499Y | D4891Y | nonsyn | Gac | Tac | 45 | 44 | 0.977778 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499Y | D4891Y | nonsyn | GaC | TaT | 45 | 1 | 0.0222222 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499del | D4891del | del | GAC | --- | 39 | 39 | 1 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499G | D4891G | nonsyn | gAc | gGc | 10 | 10 | 1 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499H | D4891H | nonsyn | Gac | Cac | 9 | 7 | 0.777778 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499H | D4891H | nonsyn | GaC | CaT | 9 | 2 | 0.222222 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499A | D4891A | nonsyn | gAc | gCc | 3 | 3 | 1 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499Q | D4891Q | nonsyn | GaC | CaG | 2 | 2 | 1 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499V | D4891V | nonsyn | gAc | gTc | 2 | 2 | 1 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499del1 | D4891del1 | del | gAc | g-c | 2 | 1 | 0.5 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499del1 | D4891del1 | del | gaC | ga- | 2 | 1 | 0.5 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499R | D4891R | nonsyn | GAC | CGA | 1 | 1 | 1 | 14935-14937 |
ORF1ab/nsp12 | 499 | D499S | D4891S | nonsyn | GAc | AGc | 1 | 1 | 1 | 14935-14937 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 5157 | 5157 | All | 0.000986 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1097 | 1097 | B.1.1.7 | 0.000982 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 593 | 593 | AY.25 | 0.003567 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 312 | 312 | B.1.617.2 | 0.001175 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 293 | 293 | AY.4 | 0.000456 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 292 | 292 | B.1.1 | 0.005297 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 284 | 284 | B.1.1.312 | 0.543021 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 196 | 196 | B.1.2 | 0.001726 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 167 | 167 | All | 0.000032 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 165 | 165 | B.1.1.138 | 1 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 129 | 129 | AY.103 | 0.000801 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 120 | 120 | AY.43 | 0.000532 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 118 | 118 | AZ.6 | 0.991597 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 113 | 113 | P.1 | 0.00178 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 101 | 101 | B.1.1.251 | 0.801587 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 92 | 92 | B.1 | 0.000843 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 84 | 85 | All | 0.000016 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaG | 1 | 85 | All | 0 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 75 | 75 | B.1.160 | 0.002339 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 72 | 72 | B.1.177 | 0.000948 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 62 | 62 | AY.44 | 0.000377 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 55 | 55 | P.1.10 | 0.014821 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 50 | 50 | AA.4 | 0.454545 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 46 | 46 | B.1.351 | 0.001367 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 44 | 45 | All | 0.000008 |
ORF1ab/nsp12 | 499 | D499Y | GaC | TaT | 1 | 45 | All | 0 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 39 | 39 | All | 0.000007 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 34 | 34 | AY.23 | 0.002371 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 34 | 34 | B.1.1.306 | 0.014906 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 31 | 31 | AY.4.2 | 0.000672 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 27 | 27 | AY.102 | 0.000716 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 27 | 27 | AY.5 | 0.000558 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 27 | 27 | P.1.4 | 0.026367 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 26 | 26 | AY.39.1 | 0.00103 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 25 | 25 | AY.61 | 0.002619 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 25 | 25 | B.1.243 | 0.00174 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 25 | 25 | B.1.427 | 0.001262 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 24 | 24 | B.1.438.1 | 0.002574 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 21 | 21 | B.13 | 0.954545 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 20 | 20 | AY.39 | 0.000494 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 18 | 18 | B.1.177.18 | 0.020882 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 17 | 17 | AY.20 | 0.000661 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 17 | 17 | P.1.15 | 0.00395 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 16 | 16 | AY.114 | 0.003698 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 16 | 16 | B.1.177.7 | 0.002638 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 14 | 14 | AY.79 | 0.016949 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 13 | 13 | A.1 | 0.003664 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 13 | 13 | B.1.1.214 | 0.000721 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 13 | 13 | B.1.158 | 0.309524 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 12 | 12 | B.1.1.28 | 0.003735 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 11 | 11 | AY.7 | 0.002156 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 11 | 11 | B.1.93 | 0.010271 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 11 | 11 | C.37 | 0.001277 |
ORF1ab/nsp12 | 499 | D499G | gAc | gGc | 10 | 10 | All | 0.000002 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 10 | 10 | AY.23.1 | 0.004174 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp12 | 499 | D499H | Gac | Cac | 7 | 9 | All | 0.000001 |
ORF1ab/nsp12 | 499 | D499H | GaC | CaT | 2 | 9 | All | 0 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 9 | 9 | B.1.637 | 0.000658 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 9 | 9 | P.1.2 | 0.010405 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 8 | 8 | B.1.1.318 | 0.002414 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 8 | 8 | Q.2 | 0.004908 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 7 | 7 | B.1.36.36 | 0.004214 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 7 | 7 | K.3 | 0.04321 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 5 | 6 | B.1 | 0.000046 |
ORF1ab/nsp12 | 499 | D499Y | GaC | TaT | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 5 | 5 | A.23.1 | 0.003521 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 5 | 5 | B.1.500 | 0.263158 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 5 | 5 | C.18 | 0.012953 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 4 | 4 | 0.222222 | |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | AY.39.2 | 0.006163 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | AY.63 | 0.001547 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | B.1.239 | 0.004884 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp12 | 499 | D499A | gAc | gCc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp12 | 499 | D499H | Gac | Cac | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 499 | D499H | GaC | CaT | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 499 | D499G | gAc | gGc | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 3 | 3 | B.1.1.420 | 0.003018 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 3 | 3 | B.1.605 | 0.017857 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp12 | 499 | D499Q | GaC | CaG | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 499 | D499G | gAc | gGc | 2 | 2 | 0.111111 | |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp12 | 499 | D499Q | GaC | CaG | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 499 | D499V | gAc | gTc | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 499 | D499del1 | gaC | ga- | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 499 | D499del1 | gAc | g-c | 1 | 2 | All | 0 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 499 | D499H | Gac | Cac | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 499 | D499G | gAc | gGc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.1.232 | 0.00363 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp12 | 499 | D499H | Gac | Cac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 499 | D499A | gAc | gCc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp12 | 499 | D499S | GAc | AGc | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 499 | D499R | GAC | CGA | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 499 | D499H | Gac | Cac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 499 | D499A | gAc | gCc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 499 | D499A | gAc | gCc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 499 | D499G | gAc | gGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 499 | D499H | GaC | CaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp12 | 499 | D499R | GAC | CGA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp12 | 499 | D499del1 | gaC | ga- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 499 | D499S | GAc | AGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp12 | 499 | D499V | gAc | gTc | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaG | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.40 | 0.034483 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp12 | 499 | D499G | gAc | gGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 499 | D499G | gAc | gGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 499 | D499del1 | gAc | g-c | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp12 | 499 | D499V | gAc | gTc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 499 | D499N | Gac | Aac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.357 | 0.009524 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp12 | 499 | D499Y | Gac | Tac | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | B.13 | 0.045455 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 499 | D499E | gaC | gaA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp12 | 499 | D499del | GAC | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp12 | 499 | D499D | gaC | gaT | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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