CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 499

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12499D499DD4891DsyngaCgaT51575157114935-14937
ORF1ab/nsp12499D499ND4891NnonsynGacAac167167114935-14937
ORF1ab/nsp12499D499ED4891EnonsyngaCgaA85840.98823514935-14937
ORF1ab/nsp12499D499ED4891EnonsyngaCgaG8510.011764714935-14937
ORF1ab/nsp12499D499YD4891YnonsynGacTac45440.97777814935-14937
ORF1ab/nsp12499D499YD4891YnonsynGaCTaT4510.022222214935-14937
ORF1ab/nsp12499D499delD4891deldelGAC---3939114935-14937
ORF1ab/nsp12499D499GD4891GnonsyngAcgGc1010114935-14937
ORF1ab/nsp12499D499HD4891HnonsynGacCac970.77777814935-14937
ORF1ab/nsp12499D499HD4891HnonsynGaCCaT920.22222214935-14937
ORF1ab/nsp12499D499AD4891AnonsyngAcgCc33114935-14937
ORF1ab/nsp12499D499QD4891QnonsynGaCCaG22114935-14937
ORF1ab/nsp12499D499VD4891VnonsyngAcgTc22114935-14937
ORF1ab/nsp12499D499del1D4891del1delgAcg-c210.514935-14937
ORF1ab/nsp12499D499del1D4891del1delgaCga-210.514935-14937
ORF1ab/nsp12499D499RD4891RnonsynGACCGA11114935-14937
ORF1ab/nsp12499D499SD4891SnonsynGAcAGc11114935-14937

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12499D499DgaCgaT51575157All0.000986
ORF1ab/nsp12499D499DgaCgaT10971097B.1.1.70.000982
ORF1ab/nsp12499D499DgaCgaT593593AY.250.003567
ORF1ab/nsp12499D499DgaCgaT312312B.1.617.20.001175
ORF1ab/nsp12499D499DgaCgaT293293AY.40.000456
ORF1ab/nsp12499D499DgaCgaT292292B.1.10.005297
ORF1ab/nsp12499D499DgaCgaT284284B.1.1.3120.543021
ORF1ab/nsp12499D499DgaCgaT196196B.1.20.001726
ORF1ab/nsp12499D499NGacAac167167All0.000032
ORF1ab/nsp12499D499DgaCgaT165165B.1.1.1381
ORF1ab/nsp12499D499DgaCgaT129129AY.1030.000801
ORF1ab/nsp12499D499DgaCgaT120120AY.430.000532
ORF1ab/nsp12499D499NGacAac118118AZ.60.991597
ORF1ab/nsp12499D499DgaCgaT113113P.10.00178
ORF1ab/nsp12499D499DgaCgaT101101B.1.1.2510.801587
ORF1ab/nsp12499D499DgaCgaT9292B.10.000843
ORF1ab/nsp12499D499EgaCgaA8485All0.000016
ORF1ab/nsp12499D499EgaCgaG185All0
ORF1ab/nsp12499D499DgaCgaT7575B.1.1600.002339
ORF1ab/nsp12499D499DgaCgaT7272B.1.1770.000948
ORF1ab/nsp12499D499DgaCgaT6262AY.440.000377
ORF1ab/nsp12499D499DgaCgaT5555P.1.100.014821
ORF1ab/nsp12499D499DgaCgaT5050AA.40.454545
ORF1ab/nsp12499D499DgaCgaT4646B.1.3510.001367
ORF1ab/nsp12499D499YGacTac4445All0.000008
ORF1ab/nsp12499D499YGaCTaT145All0
ORF1ab/nsp12499D499delGAC---3939All0.000007
ORF1ab/nsp12499D499DgaCgaT3434AY.230.002371
ORF1ab/nsp12499D499DgaCgaT3434B.1.1.3060.014906
ORF1ab/nsp12499D499DgaCgaT3131AY.4.20.000672
ORF1ab/nsp12499D499DgaCgaT2727AY.1020.000716
ORF1ab/nsp12499D499DgaCgaT2727AY.50.000558
ORF1ab/nsp12499D499DgaCgaT2727P.1.40.026367
ORF1ab/nsp12499D499DgaCgaT2626AY.39.10.00103
ORF1ab/nsp12499D499DgaCgaT2525AY.610.002619
ORF1ab/nsp12499D499DgaCgaT2525B.1.2430.00174
ORF1ab/nsp12499D499DgaCgaT2525B.1.4270.001262
ORF1ab/nsp12499D499DgaCgaT2424B.1.438.10.002574
ORF1ab/nsp12499D499DgaCgaT2121B.130.954545
ORF1ab/nsp12499D499DgaCgaT2020AY.390.000494
ORF1ab/nsp12499D499DgaCgaT2020B.1.4290.000471
ORF1ab/nsp12499D499DgaCgaT1818B.1.177.180.020882
ORF1ab/nsp12499D499DgaCgaT1717AY.200.000661
ORF1ab/nsp12499D499EgaCgaA1717B.1.617.20.000064
ORF1ab/nsp12499D499DgaCgaT1717P.1.150.00395
ORF1ab/nsp12499D499DgaCgaT1616AY.1140.003698
ORF1ab/nsp12499D499DgaCgaT1616B.1.177.70.002638
ORF1ab/nsp12499D499DgaCgaT1515AY.290.000237
ORF1ab/nsp12499D499DgaCgaT1414AY.1000.000644
ORF1ab/nsp12499D499DgaCgaT1414AY.1180.000877
ORF1ab/nsp12499D499DgaCgaT1414AY.790.016949
ORF1ab/nsp12499D499DgaCgaT1313A.10.003664
ORF1ab/nsp12499D499DgaCgaT1313AY.30.000129
ORF1ab/nsp12499D499DgaCgaT1313B.1.1.2140.000721
ORF1ab/nsp12499D499DgaCgaT1313B.1.1580.309524
ORF1ab/nsp12499D499DgaCgaT1212B.1.1.280.003735
ORF1ab/nsp12499D499EgaCgaA1212B.1.1.70.000011
ORF1ab/nsp12499D499YGacTac1111AY.430.000049
ORF1ab/nsp12499D499DgaCgaT1111AY.70.002156
ORF1ab/nsp12499D499DgaCgaT1111B.1.930.010271
ORF1ab/nsp12499D499DgaCgaT1111C.370.001277
ORF1ab/nsp12499D499GgAcgGc1010All0.000002
ORF1ab/nsp12499D499DgaCgaT1010AY.23.10.004174
ORF1ab/nsp12499D499delGAC---1010B.1.1.70.000009
ORF1ab/nsp12499D499HGacCac79All0.000001
ORF1ab/nsp12499D499HGaCCaT29All0
ORF1ab/nsp12499D499DgaCgaT99AY.1130.001282
ORF1ab/nsp12499D499DgaCgaT99AY.330.000601
ORF1ab/nsp12499D499NGacAac99B.1.1.70.000008
ORF1ab/nsp12499D499DgaCgaT99B.1.6370.000658
ORF1ab/nsp12499D499DgaCgaT99P.1.140.00043
ORF1ab/nsp12499D499DgaCgaT99P.1.20.010405
ORF1ab/nsp12499D499YGacTac88AY.40.000012
ORF1ab/nsp12499D499DgaCgaT88AY.420.000322
ORF1ab/nsp12499D499NGacAac88B.1.1.3180.002414
ORF1ab/nsp12499D499DgaCgaT88B.1.1.5190.000318
ORF1ab/nsp12499D499NGacAac88B.1.617.20.00003
ORF1ab/nsp12499D499DgaCgaT88Q.20.004908
ORF1ab/nsp12499D499DgaCgaT77AY.470.000218
ORF1ab/nsp12499D499DgaCgaT77AY.9.20.000257
ORF1ab/nsp12499D499DgaCgaT77B.1.36.360.004214
ORF1ab/nsp12499D499DgaCgaT77B.1.5250.000792
ORF1ab/nsp12499D499DgaCgaT77K.30.04321
ORF1ab/nsp12499D499DgaCgaT66AY.260.00017
ORF1ab/nsp12499D499DgaCgaT66AY.270.000388
ORF1ab/nsp12499D499EgaCgaA66AY.40.000009
ORF1ab/nsp12499D499NGacAac66AY.40.000009
ORF1ab/nsp12499D499DgaCgaT66AY.750.000336
ORF1ab/nsp12499D499YGacTac56B.10.000046
ORF1ab/nsp12499D499YGaCTaT16B.10.000009
ORF1ab/nsp12499D499DgaCgaT66B.1.2580.000399
ORF1ab/nsp12499D499DgaCgaT66B.1.360.000875
ORF1ab/nsp12499D499DgaCgaT66B.1.5260.000141
ORF1ab/nsp12499D499DgaCgaT55A.23.10.003521
ORF1ab/nsp12499D499DgaCgaT55AY.5.40.001384
ORF1ab/nsp12499D499EgaCgaA55B.1.10.000091
ORF1ab/nsp12499D499DgaCgaT55B.1.177.210.000382
ORF1ab/nsp12499D499DgaCgaT55B.1.177.810.000947
ORF1ab/nsp12499D499DgaCgaT55B.1.2210.000355
ORF1ab/nsp12499D499DgaCgaT55B.1.5000.263158
ORF1ab/nsp12499D499DgaCgaT55C.180.012953
ORF1ab/nsp12499D499DgaCgaT55Q.80.000825
ORF1ab/nsp12499D499EgaCgaA440.222222
ORF1ab/nsp12499D499EgaCgaA44AY.1190.000141
ORF1ab/nsp12499D499DgaCgaT44AY.360.000593
ORF1ab/nsp12499D499DgaCgaT44AY.39.20.006163
ORF1ab/nsp12499D499DgaCgaT44AY.410.001176
ORF1ab/nsp12499D499DgaCgaT44AY.460.000416
ORF1ab/nsp12499D499DgaCgaT44AY.540.000381
ORF1ab/nsp12499D499DgaCgaT44AY.630.001547
ORF1ab/nsp12499D499DgaCgaT44AY.75.10.000721
ORF1ab/nsp12499D499DgaCgaT44AY.98.10.000194
ORF1ab/nsp12499D499EgaCgaA44B.10.000037
ORF1ab/nsp12499D499DgaCgaT44B.1.2390.004884
ORF1ab/nsp12499D499DgaCgaT44B.1.3110.001098
ORF1ab/nsp12499D499DgaCgaT44B.1.5750.001214
ORF1ab/nsp12499D499DgaCgaT44P.20.000747
ORF1ab/nsp12499D499AgAcgCc33All0.000001
ORF1ab/nsp12499D499DgaCgaT33AY.1190.000106
ORF1ab/nsp12499D499DgaCgaT33AY.160.001139
ORF1ab/nsp12499D499EgaCgaA33AY.30.00003
ORF1ab/nsp12499D499HGacCac23AY.430.000009
ORF1ab/nsp12499D499HGaCCaT13AY.430.000004
ORF1ab/nsp12499D499DgaCgaT33AY.450.000365
ORF1ab/nsp12499D499NGacAac33AY.50.000062
ORF1ab/nsp12499D499delGAC---33B.1.10.000054
ORF1ab/nsp12499D499GgAcgGc33B.1.10.000054
ORF1ab/nsp12499D499DgaCgaT33B.1.1.2220.000612
ORF1ab/nsp12499D499DgaCgaT33B.1.1.4200.003018
ORF1ab/nsp12499D499DgaCgaT33B.1.1.4340.001046
ORF1ab/nsp12499D499YGacTac33B.1.1.70.000003
ORF1ab/nsp12499D499DgaCgaT33B.1.177.120.000455
ORF1ab/nsp12499D499EgaCgaA33B.1.2360.00616
ORF1ab/nsp12499D499DgaCgaT33B.1.36.290.001552
ORF1ab/nsp12499D499DgaCgaT33B.1.5170.001281
ORF1ab/nsp12499D499DgaCgaT33B.1.6050.017857
ORF1ab/nsp12499D499EgaCgaA33P.10.000047
ORF1ab/nsp12499D499QGaCCaG220.111111
ORF1ab/nsp12499D499GgAcgGc220.111111
ORF1ab/nsp12499D499DgaCgaT22A.270.003311
ORF1ab/nsp12499D499QGaCCaG22All0
ORF1ab/nsp12499D499VgAcgTc22All0
ORF1ab/nsp12499D499del1gaCga-12All0
ORF1ab/nsp12499D499del1gAcg-c12All0
ORF1ab/nsp12499D499NGacAac22AY.1020.000053
ORF1ab/nsp12499D499HGacCac22AY.1030.000012
ORF1ab/nsp12499D499EgaCgaA22AY.1140.000462
ORF1ab/nsp12499D499DgaCgaT22AY.1170.000169
ORF1ab/nsp12499D499DgaCgaT22AY.1210.000271
ORF1ab/nsp12499D499DgaCgaT22AY.320.001065
ORF1ab/nsp12499D499DgaCgaT22AY.370.000632
ORF1ab/nsp12499D499YGacTac22AY.39.10.000079
ORF1ab/nsp12499D499DgaCgaT22AY.46.40.000329
ORF1ab/nsp12499D499GgAcgGc22AY.50.000041
ORF1ab/nsp12499D499DgaCgaT22AY.550.001835
ORF1ab/nsp12499D499DgaCgaT22AY.620.000871
ORF1ab/nsp12499D499DgaCgaT22AY.80.001212
ORF1ab/nsp12499D499DgaCgaT22AY.980.000158
ORF1ab/nsp12499D499DgaCgaT22B.1.1.2320.00363
ORF1ab/nsp12499D499DgaCgaT22B.1.1.370.000386
ORF1ab/nsp12499D499DgaCgaT22B.1.1.4160.00181
ORF1ab/nsp12499D499EgaCgaA22B.1.1.5190.000079
ORF1ab/nsp12499D499NGacAac22B.1.1260.002551
ORF1ab/nsp12499D499DgaCgaT22B.1.1280.001271
ORF1ab/nsp12499D499EgaCgaA22B.1.1770.000026
ORF1ab/nsp12499D499DgaCgaT22B.1.177.160.001329
ORF1ab/nsp12499D499DgaCgaT22B.1.177.50.002484
ORF1ab/nsp12499D499YGacTac22B.1.20.000018
ORF1ab/nsp12499D499NGacAac22B.1.2430.000139
ORF1ab/nsp12499D499DgaCgaT22B.1.4000.000858
ORF1ab/nsp12499D499DgaCgaT22B.1.4590.008163
ORF1ab/nsp12499D499DgaCgaT22B.1.4970.00063
ORF1ab/nsp12499D499DgaCgaT22B.1.5960.000174
ORF1ab/nsp12499D499DgaCgaT22B.1.617.10.000258
ORF1ab/nsp12499D499HGacCac22B.1.617.20.000008
ORF1ab/nsp12499D499YGacTac22B.1.617.20.000008
ORF1ab/nsp12499D499DgaCgaT22B.1.6210.000177
ORF1ab/nsp12499D499DgaCgaT22B.60.00182
ORF1ab/nsp12499D499DgaCgaT22D.20.00015
ORF1ab/nsp12499D499YGacTac22D.20.00015
ORF1ab/nsp12499D499delGAC---22P.10.000032
ORF1ab/nsp12499D499DgaCgaT22P.1.120.000968
ORF1ab/nsp12499D499EgaCgaA22P.20.000373
ORF1ab/nsp12499D499AgAcgCc11A.20.000662
ORF1ab/nsp12499D499DgaCgaT11A.20.000662
ORF1ab/nsp12499D499NGacAac11A.2.40.003367
ORF1ab/nsp12499D499DgaCgaT11A.2.50.000499
ORF1ab/nsp12499D499DgaCgaT11A.2.5.30.010309
ORF1ab/nsp12499D499EgaCgaA11AD.20.000219
ORF1ab/nsp12499D499SGAcAGc11All0
ORF1ab/nsp12499D499RGACCGA11All0
ORF1ab/nsp12499D499EgaCgaA11AY.1000.000046
ORF1ab/nsp12499D499YGacTac11AY.1020.000027
ORF1ab/nsp12499D499HGacCac11AY.1020.000027
ORF1ab/nsp12499D499YGacTac11AY.1030.000006
ORF1ab/nsp12499D499delGAC---11AY.1070.000466
ORF1ab/nsp12499D499DgaCgaT11AY.1090.00074
ORF1ab/nsp12499D499DgaCgaT11AY.1100.000113
ORF1ab/nsp12499D499DgaCgaT11AY.1110.000183
ORF1ab/nsp12499D499EgaCgaA11AY.1180.000063
ORF1ab/nsp12499D499YGacTac11AY.1190.000035
ORF1ab/nsp12499D499NGacAac11AY.1200.000037
ORF1ab/nsp12499D499DgaCgaT11AY.130.000161
ORF1ab/nsp12499D499DgaCgaT11AY.140.000088
ORF1ab/nsp12499D499DgaCgaT11AY.16.10.00047
ORF1ab/nsp12499D499YGacTac11AY.16.10.00047
ORF1ab/nsp12499D499NGacAac11AY.230.00007
ORF1ab/nsp12499D499EgaCgaA11AY.250.000006
ORF1ab/nsp12499D499delGAC---11AY.250.000006
ORF1ab/nsp12499D499NGacAac11AY.250.000006
ORF1ab/nsp12499D499AgAcgCc11AY.260.000028
ORF1ab/nsp12499D499delGAC---11AY.30.00001
ORF1ab/nsp12499D499DgaCgaT11AY.3.10.000085
ORF1ab/nsp12499D499EgaCgaA11AY.340.000097
ORF1ab/nsp12499D499AgAcgCc11AY.340.000097
ORF1ab/nsp12499D499DgaCgaT11AY.34.10.00051
ORF1ab/nsp12499D499delGAC---11AY.350.000233
ORF1ab/nsp12499D499DgaCgaT11AY.350.000233
ORF1ab/nsp12499D499delGAC---11AY.380.000499
ORF1ab/nsp12499D499DgaCgaT11AY.380.000499
ORF1ab/nsp12499D499GgAcgGc11AY.40.000002
ORF1ab/nsp12499D499DgaCgaT11AY.4.10.000737
ORF1ab/nsp12499D499DgaCgaT11AY.4.40.000409
ORF1ab/nsp12499D499delGAC---11AY.4.50.000107
ORF1ab/nsp12499D499delGAC---11AY.420.00004
ORF1ab/nsp12499D499delGAC---11AY.430.000004
ORF1ab/nsp12499D499EgaCgaA11AY.440.000006
ORF1ab/nsp12499D499delGAC---11AY.440.000006
ORF1ab/nsp12499D499NGacAac11AY.440.000006
ORF1ab/nsp12499D499delGAC---11AY.460.000104
ORF1ab/nsp12499D499YGacTac11AY.46.60.000072
ORF1ab/nsp12499D499DgaCgaT11AY.46.60.000072
ORF1ab/nsp12499D499YGacTac11AY.50.000021
ORF1ab/nsp12499D499DgaCgaT11AY.590.00053
ORF1ab/nsp12499D499DgaCgaT11AY.650.000533
ORF1ab/nsp12499D499HGaCCaT11AY.670.000464
ORF1ab/nsp12499D499EgaCgaA11AY.700.000209
ORF1ab/nsp12499D499DgaCgaT11AY.730.000665
ORF1ab/nsp12499D499DgaCgaT11AY.740.000116
ORF1ab/nsp12499D499DgaCgaT11AY.770.001127
ORF1ab/nsp12499D499RGACCGA11AY.840.000437
ORF1ab/nsp12499D499DgaCgaT11AY.90.000068
ORF1ab/nsp12499D499DgaCgaT11AY.9.10.000084
ORF1ab/nsp12499D499delGAC---11AY.990.001049
ORF1ab/nsp12499D499delGAC---11AY.99.10.001553
ORF1ab/nsp12499D499EgaCgaA11AY.99.20.000092
ORF1ab/nsp12499D499DgaCgaT11AZ.10.000867
ORF1ab/nsp12499D499del1gaCga-11B.10.000009
ORF1ab/nsp12499D499NGacAac11B.10.000009
ORF1ab/nsp12499D499delGAC---11B.10.000009
ORF1ab/nsp12499D499SGAcAGc11B.10.000009
ORF1ab/nsp12499D499YGacTac11B.1.10.000018
ORF1ab/nsp12499D499NGacAac11B.1.1.1340.011364
ORF1ab/nsp12499D499VgAcgTc11B.1.1.1480.008772
ORF1ab/nsp12499D499delGAC---11B.1.1.1590.004673
ORF1ab/nsp12499D499DgaCgaT11B.1.1.1610.003534
ORF1ab/nsp12499D499DgaCgaT11B.1.1.1890.001513
ORF1ab/nsp12499D499DgaCgaT11B.1.1.1980.001468
ORF1ab/nsp12499D499DgaCgaT11B.1.1.2160.00089
ORF1ab/nsp12499D499DgaCgaT11B.1.1.2410.00207
ORF1ab/nsp12499D499DgaCgaT11B.1.1.250.000569
ORF1ab/nsp12499D499delGAC---11B.1.1.250.000569
ORF1ab/nsp12499D499DgaCgaT11B.1.1.2540.011236
ORF1ab/nsp12499D499EgaCgaG11B.1.1.2770.000759
ORF1ab/nsp12499D499DgaCgaT11B.1.1.2800.003086
ORF1ab/nsp12499D499DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3040.002809
ORF1ab/nsp12499D499delGAC---11B.1.1.3060.000438
ORF1ab/nsp12499D499NGacAac11B.1.1.3160.000925
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3160.000925
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3480.000796
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3760.005952
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3770.001381
ORF1ab/nsp12499D499DgaCgaT11B.1.1.3970.002252
ORF1ab/nsp12499D499DgaCgaT11B.1.1.400.034483
ORF1ab/nsp12499D499DgaCgaT11B.1.1.4330.001425
ORF1ab/nsp12499D499DgaCgaT11B.1.1.4850.016667
ORF1ab/nsp12499D499DgaCgaT11B.1.1.4860.001577
ORF1ab/nsp12499D499DgaCgaT11B.1.1.5260.003546
ORF1ab/nsp12499D499GgAcgGc11B.1.1.70.000001
ORF1ab/nsp12499D499DgaCgaT11B.1.1050.009615
ORF1ab/nsp12499D499EgaCgaA11B.1.1100.004525
ORF1ab/nsp12499D499DgaCgaT11B.1.160.140.002119
ORF1ab/nsp12499D499delGAC---11B.1.160.230.004831
ORF1ab/nsp12499D499delGAC---11B.1.1770.000013
ORF1ab/nsp12499D499GgAcgGc11B.1.1770.000013
ORF1ab/nsp12499D499DgaCgaT11B.1.177.320.00135
ORF1ab/nsp12499D499DgaCgaT11B.1.177.510.004566
ORF1ab/nsp12499D499DgaCgaT11B.1.177.530.002392
ORF1ab/nsp12499D499DgaCgaT11B.1.177.600.000218
ORF1ab/nsp12499D499delGAC---11B.1.177.680.015152
ORF1ab/nsp12499D499DgaCgaT11B.1.177.730.000566
ORF1ab/nsp12499D499delGAC---11B.1.177.760.002494
ORF1ab/nsp12499D499DgaCgaT11B.1.177.820.000477
ORF1ab/nsp12499D499DgaCgaT11B.1.177.870.000728
ORF1ab/nsp12499D499DgaCgaT11B.1.1890.004292
ORF1ab/nsp12499D499EgaCgaA11B.1.20.000009
ORF1ab/nsp12499D499del1gAcg-c11B.1.2060.000816
ORF1ab/nsp12499D499EgaCgaA11B.1.2210.000071
ORF1ab/nsp12499D499DgaCgaT11B.1.230.006061
ORF1ab/nsp12499D499DgaCgaT11B.1.2340.000132
ORF1ab/nsp12499D499YGacTac11B.1.2340.000132
ORF1ab/nsp12499D499DgaCgaT11B.1.2400.000216
ORF1ab/nsp12499D499DgaCgaT11B.1.2410.000812
ORF1ab/nsp12499D499delGAC---11B.1.2580.000067
ORF1ab/nsp12499D499DgaCgaT11B.1.258.100.011364
ORF1ab/nsp12499D499VgAcgTc11B.1.258.140.00098
ORF1ab/nsp12499D499DgaCgaT11B.1.2600.003344
ORF1ab/nsp12499D499DgaCgaT11B.1.2650.001271
ORF1ab/nsp12499D499DgaCgaT11B.1.2790.000514
ORF1ab/nsp12499D499DgaCgaT11B.1.3360.002439
ORF1ab/nsp12499D499DgaCgaT11B.1.3490.000715
ORF1ab/nsp12499D499NGacAac11B.1.3510.00003
ORF1ab/nsp12499D499DgaCgaT11B.1.3570.009524
ORF1ab/nsp12499D499DgaCgaT11B.1.36.170.000494
ORF1ab/nsp12499D499DgaCgaT11B.1.36.280.005747
ORF1ab/nsp12499D499DgaCgaT11B.1.3780.006849
ORF1ab/nsp12499D499EgaCgaA11B.1.4270.00005
ORF1ab/nsp12499D499DgaCgaT11B.1.4280.00102
ORF1ab/nsp12499D499DgaCgaT11B.1.4410.009615
ORF1ab/nsp12499D499DgaCgaT11B.1.5090.000866
ORF1ab/nsp12499D499YGacTac11B.1.5260.000024
ORF1ab/nsp12499D499DgaCgaT11B.1.5600.00463
ORF1ab/nsp12499D499DgaCgaT11B.1.564.10.001577
ORF1ab/nsp12499D499EgaCgaA11B.1.5650.00081
ORF1ab/nsp12499D499EgaCgaA11B.1.5750.000303
ORF1ab/nsp12499D499DgaCgaT11B.1.575.10.002439
ORF1ab/nsp12499D499DgaCgaT11B.1.5760.000907
ORF1ab/nsp12499D499DgaCgaT11B.1.5950.000261
ORF1ab/nsp12499D499DgaCgaT11B.1.6230.000536
ORF1ab/nsp12499D499DgaCgaT11B.1.6250.002353
ORF1ab/nsp12499D499DgaCgaT11B.1.6340.003425
ORF1ab/nsp12499D499DgaCgaT11B.1.700.02439
ORF1ab/nsp12499D499DgaCgaT11B.1.940.027027
ORF1ab/nsp12499D499delGAC---11B.130.045455
ORF1ab/nsp12499D499DgaCgaT11B.310.003731
ORF1ab/nsp12499D499DgaCgaT11C.10.002392
ORF1ab/nsp12499D499DgaCgaT11C.1.20.004255
ORF1ab/nsp12499D499DgaCgaT11C.300.001727
ORF1ab/nsp12499D499delGAC---11C.360.000911
ORF1ab/nsp12499D499EgaCgaA11D.20.000075
ORF1ab/nsp12499D499DgaCgaT11N.50.001767
ORF1ab/nsp12499D499delGAC---11P.1.40.000977
ORF1ab/nsp12499D499DgaCgaT11P.1.70.000319
ORF1ab/nsp12499D499DgaCgaT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.