CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 491 | N491N | N4883N | syn | aaC | aaT | 2698 | 2698 | 1 | 14911-14913 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2698 | 2698 | All | 0.000516 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 868 | 868 | AY.43 | 0.003846 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 552 | 552 | B.1.1.7 | 0.000494 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 390 | 390 | AY.16.1 | 0.183271 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 96 | 96 | AY.14 | 0.008449 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 87 | 87 | AY.4 | 0.000135 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 85 | 85 | AY.29 | 0.001341 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 57 | 57 | B.1.177.35 | 0.039392 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 39 | 39 | AY.16 | 0.014806 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 39 | 39 | B.1.617.2 | 0.000147 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 36 | 36 | B.1.2 | 0.000317 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 28 | 28 | AY.25 | 0.000168 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 19 | 19 | AY.3 | 0.000189 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 17 | 17 | P.1.14 | 0.000813 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 14 | 14 | B.1.438.1 | 0.001502 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 13 | 13 | B.1.177.42 | 0.011628 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 12 | 12 | B.1.1.159 | 0.056075 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 8 | 8 | B.1.1.26 | 0.041885 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | AY.57 | 0.003281 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.398 | 0.008929 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.154 | 0.04 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.209 | 0.008929 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.258.9 | 0.005 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | P.1.16 | 0.000374 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|