CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 491 | N491N | N4883N | syn | aaC | aaT | 2698 | 2698 | 1 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491S | N4883S | nonsyn | aAc | aGc | 387 | 385 | 0.994832 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491S | N4883S | nonsyn | aAC | aGT | 387 | 2 | 0.00516796 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491K | N4883K | nonsyn | aaC | aaA | 144 | 134 | 0.930556 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491K | N4883K | nonsyn | aaC | aaG | 144 | 10 | 0.0694444 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491T | N4883T | nonsyn | aAc | aCc | 93 | 93 | 1 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491D | N4883D | nonsyn | Aac | Gac | 42 | 39 | 0.928571 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491D | N4883D | nonsyn | AaC | GaT | 42 | 3 | 0.0714286 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491V | N4883V | nonsyn | AAc | GTc | 34 | 29 | 0.852941 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491V | N4883V | nonsyn | AAC | GTA | 34 | 2 | 0.0588235 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491V | N4883V | nonsyn | AAC | GTT | 34 | 2 | 0.0588235 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491V | N4883V | nonsyn | AAC | GTG | 34 | 1 | 0.0294118 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491Y | N4883Y | nonsyn | Aac | Tac | 29 | 24 | 0.827586 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491Y | N4883Y | nonsyn | AaC | TaT | 29 | 5 | 0.172414 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491del | N4883del | del | AAC | --- | 25 | 25 | 1 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491I | N4883I | nonsyn | aAc | aTc | 17 | 11 | 0.647059 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491I | N4883I | nonsyn | aAC | aTT | 17 | 3 | 0.176471 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491I | N4883I | nonsyn | aAC | aTA | 17 | 3 | 0.176471 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491F | N4883F | nonsyn | AAc | TTc | 9 | 6 | 0.666667 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491F | N4883F | nonsyn | AAC | TTT | 9 | 3 | 0.333333 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491C | N4883C | nonsyn | AAc | TGc | 6 | 4 | 0.666667 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491G | N4883G | nonsyn | AAc | GGc | 6 | 3 | 0.5 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491G | N4883G | nonsyn | AAC | GGT | 6 | 2 | 0.333333 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491C | N4883C | nonsyn | AAC | TGT | 6 | 2 | 0.333333 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491G | N4883G | nonsyn | AAC | GGA | 6 | 1 | 0.166667 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491del1 | N4883del1 | del | Aac | -ac | 4 | 4 | 1 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491E | N4883E | nonsyn | AaC | GaA | 4 | 3 | 0.75 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491X | N4883X | nonsyn | AaC | TaA | 4 | 2 | 0.5 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491X | N4883X | nonsyn | AaC | TaG | 4 | 1 | 0.25 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491E | N4883E | nonsyn | AaC | GaG | 4 | 1 | 0.25 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491X | N4883X | nonsyn | AAC | TGA | 4 | 1 | 0.25 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491L | N4883L | nonsyn | AAC | TTA | 3 | 2 | 0.666667 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491L | N4883L | nonsyn | AAC | TTG | 3 | 1 | 0.333333 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491R | N4883R | nonsyn | aAC | aGA | 2 | 2 | 1 | 14911-14913 |
ORF1ab/nsp12 | 491 | N491M | N4883M | nonsyn | aAC | aTG | 1 | 1 | 1 | 14911-14913 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2698 | 2698 | All | 0.000516 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 868 | 868 | AY.43 | 0.003846 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 552 | 552 | B.1.1.7 | 0.000494 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 390 | 390 | AY.16.1 | 0.183271 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 385 | 387 | All | 0.000074 |
ORF1ab/nsp12 | 491 | N491S | aAC | aGT | 2 | 387 | All | 0 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 154 | 154 | B.1.108 | 0.895349 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 134 | 144 | All | 0.000026 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaG | 10 | 144 | All | 0.000002 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 96 | 96 | AY.14 | 0.008449 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 93 | 93 | All | 0.000018 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 87 | 87 | AY.4 | 0.000135 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 85 | 85 | AY.29 | 0.001341 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 84 | 84 | B.1.1.7 | 0.000075 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 83 | 83 | AY.39 | 0.002051 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 75 | 77 | B.1.1.7 | 0.000067 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaG | 2 | 77 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 58 | 58 | AY.44 | 0.000353 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 57 | 57 | B.1.177.35 | 0.039392 |
ORF1ab/nsp12 | 491 | N491D | Aac | Gac | 39 | 42 | All | 0.000007 |
ORF1ab/nsp12 | 491 | N491D | AaC | GaT | 3 | 42 | All | 0.000001 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 39 | 39 | AY.16 | 0.014806 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 39 | 39 | B.1.617.2 | 0.000147 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 36 | 36 | B.1.2 | 0.000317 |
ORF1ab/nsp12 | 491 | N491V | AAc | GTc | 29 | 34 | All | 0.000006 |
ORF1ab/nsp12 | 491 | N491V | AAC | GTA | 2 | 34 | All | 0 |
ORF1ab/nsp12 | 491 | N491V | AAC | GTT | 2 | 34 | All | 0 |
ORF1ab/nsp12 | 491 | N491V | AAC | GTG | 1 | 34 | All | 0 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 24 | 29 | All | 0.000005 |
ORF1ab/nsp12 | 491 | N491Y | AaC | TaT | 5 | 29 | All | 0.000001 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 28 | 28 | AY.25 | 0.000168 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 27 | 27 | AY.43 | 0.00012 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 25 | 25 | All | 0.000005 |
ORF1ab/nsp12 | 491 | N491D | Aac | Gac | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp12 | 491 | N491V | AAc | GTc | 22 | 22 | B.1.243 | 0.001531 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 21 | 21 | B.1.1.25 | 0.011939 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 19 | 19 | AY.3 | 0.000189 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp12 | 491 | N491I | aAc | aTc | 11 | 17 | All | 0.000002 |
ORF1ab/nsp12 | 491 | N491I | aAC | aTA | 3 | 17 | All | 0.000001 |
ORF1ab/nsp12 | 491 | N491I | aAC | aTT | 3 | 17 | All | 0.000001 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 17 | 17 | P.1.14 | 0.000813 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 14 | 14 | B.1.438.1 | 0.001502 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 13 | 13 | B.1.177.42 | 0.011628 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 12 | 12 | B.1.1.159 | 0.056075 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 7 | 11 | B.1 | 0.000064 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaG | 4 | 11 | B.1 | 0.000037 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp12 | 491 | N491F | AAc | TTc | 6 | 9 | All | 0.000001 |
ORF1ab/nsp12 | 491 | N491F | AAC | TTT | 3 | 9 | All | 0.000001 |
ORF1ab/nsp12 | 491 | N491I | aAc | aTc | 5 | 9 | B.1 | 0.000046 |
ORF1ab/nsp12 | 491 | N491V | AAc | GTc | 5 | 9 | B.1 | 0.000046 |
ORF1ab/nsp12 | 491 | N491I | aAC | aTA | 3 | 9 | B.1 | 0.000027 |
ORF1ab/nsp12 | 491 | N491V | AAC | GTA | 2 | 9 | B.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491V | AAC | GTT | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491V | AAC | GTG | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491I | aAC | aTT | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491D | Aac | Gac | 7 | 9 | B.1.1 | 0.000127 |
ORF1ab/nsp12 | 491 | N491D | AaC | GaT | 2 | 9 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 8 | 8 | B.1.1.26 | 0.041885 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp12 | 491 | N491C | AAc | TGc | 4 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 491 | N491G | AAc | GGc | 3 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 491 | N491C | AAC | TGT | 2 | 6 | All | 0 |
ORF1ab/nsp12 | 491 | N491G | AAC | GGT | 2 | 6 | All | 0 |
ORF1ab/nsp12 | 491 | N491G | AAC | GGA | 1 | 6 | All | 0 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 5 | 6 | B.1 | 0.000046 |
ORF1ab/nsp12 | 491 | N491Y | AaC | TaT | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | AY.57 | 0.003281 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp12 | 491 | N491D | Aac | Gac | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp12 | 491 | N491D | AaC | GaT | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp12 | 491 | N491del1 | Aac | -ac | 4 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 491 | N491E | AaC | GaA | 3 | 4 | All | 0.000001 |
ORF1ab/nsp12 | 491 | N491X | AaC | TaA | 2 | 4 | All | 0 |
ORF1ab/nsp12 | 491 | N491E | AaC | GaG | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 491 | N491X | AAC | TGA | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 491 | N491X | AaC | TaG | 1 | 4 | All | 0 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 491 | N491F | AAc | TTc | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp12 | 491 | N491X | AaC | TaA | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491F | AAC | TTT | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491X | AAC | TGA | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491X | AaC | TaG | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp12 | 491 | N491G | AAc | GGc | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 491 | N491S | aAC | aGT | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 491 | N491C | AAc | TGc | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 491 | N491Y | AaC | TaT | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 491 | N491G | AAC | GGT | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 491 | N491C | AAC | TGT | 2 | 4 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp12 | 491 | N491L | AAC | TTA | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 491 | N491L | AAC | TTG | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaG | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp12 | 491 | N491E | AaC | GaA | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491L | AAC | TTA | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491E | AaC | GaG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491L | AAC | TTG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.398 | 0.008929 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp12 | 491 | N491R | aAC | aGA | 2 | 2 | All | 0 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp12 | 491 | N491R | aAC | aGA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491G | AAC | GGA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491G | AAc | GGc | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp12 | 491 | N491F | AAC | TTT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491V | AAC | GTT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491I | aAC | aTT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491F | AAc | TTc | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491V | AAc | GTc | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491I | aAc | aTc | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp12 | 491 | N491Y | AaC | TaT | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 491 | N491I | aAc | aTc | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 491 | N491F | AAc | TTc | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 491 | N491I | aAC | aTT | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 491 | N491F | AAC | TTT | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 491 | N491del1 | Aac | -ac | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp12 | 491 | N491D | Aac | Gac | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 491 | N491I | aAc | aTc | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp12 | 491 | N491M | aAC | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 491 | N491del1 | Aac | -ac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 491 | N491D | Aac | Gac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 491 | N491F | AAc | TTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 491 | N491I | aAc | aTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp12 | 491 | N491C | AAc | TGc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 491 | N491C | AAc | TGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491M | aAC | aTG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 491 | N491E | AaC | GaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.154 | 0.04 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.209 | 0.008929 |
ORF1ab/nsp12 | 491 | N491D | Aac | Gac | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 491 | N491I | aAc | aTc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 1 | 1 | B.1.177.28 | 0.007407 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 491 | N491Y | Aac | Tac | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.258.9 | 0.005 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp12 | 491 | N491del1 | Aac | -ac | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 491 | N491V | AAc | GTc | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp12 | 491 | N491T | aAc | aCc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 491 | N491D | Aac | Gac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp12 | 491 | N491Y | AaC | TaT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp12 | 491 | N491S | aAc | aGc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 491 | N491K | aaC | aaA | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp12 | 491 | N491del | AAC | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 491 | N491D | Aac | Gac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 491 | N491N | aaC | aaT | 1 | 1 | P.1.16 | 0.000374 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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