CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 478 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12478K478NK4870NnonsynaaGaaT722171770.99390714872-14874

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12478K478NaaGaaT71777221All0.001373
ORF1ab/nsp12478K478NaaGaaT885892B.1.1.70.000792
ORF1ab/nsp12478K478NaaGaaT880881B.1.617.20.003314
ORF1ab/nsp12478K478NaaGaaT878878AY.660.939037
ORF1ab/nsp12478K478NaaGaaT560561B.1.617.10.072221
ORF1ab/nsp12478K478NaaGaaT435435AY.140.038286
ORF1ab/nsp12478K478NaaGaaT394394AY.780.607088
ORF1ab/nsp12478K478NaaGaaT343345AY.430.00152
ORF1ab/nsp12478K478NaaGaaT293295AY.40.000456
ORF1ab/nsp12478K478NaaGaaT219219AY.290.003454
ORF1ab/nsp12478K478NaaGaaT174174AY.250.001047
ORF1ab/nsp12478K478NaaGaaT127127B.1.360.018529
ORF1ab/nsp12478K478NaaGaaT124125AY.1030.00077
ORF1ab/nsp12478K478NaaGaaT114116B.10.001044
ORF1ab/nsp12478K478NaaGaaT107107B.1.20.000942
ORF1ab/nsp12478K478NaaGaaT105105P.10.001654
ORF1ab/nsp12478K478NaaGaaT7777AY.440.000469
ORF1ab/nsp12478K478NaaGaaT6163AY.1020.001617
ORF1ab/nsp12478K478NaaGaaT4952B.1.3510.001457
ORF1ab/nsp12478K478NaaGaaT4548AY.390.001112
ORF1ab/nsp12478K478NaaGaaT4343B.1.4270.002171
ORF1ab/nsp12478K478NaaGaaT4040AY.9.20.001469
ORF1ab/nsp12478K478NaaGaaT3838AY.260.001076
ORF1ab/nsp12478K478NaaGaaT3535AY.120.10.011236
ORF1ab/nsp12478K478NaaGaaT3434B.1.1.4320.043038
ORF1ab/nsp12478K478NaaGaaT3232AY.30.000318
ORF1ab/nsp12478K478NaaGaaT3131B.1.1770.000408
ORF1ab/nsp12478K478NaaGaaT3131B.1.2450.96875
ORF1ab/nsp12478K478NaaGaaT3030B.1.6370.002192
ORF1ab/nsp12478K478NaaGaaT2929AY.7.10.003268
ORF1ab/nsp12478K478NaaGaaT2727B.1.177.810.005112
ORF1ab/nsp12478K478NaaGaaT2727B.1.2580.001797
ORF1ab/nsp12478K478NaaGaaT2525AY.1180.001566
ORF1ab/nsp12478K478NaaGaaT2323B.1.1.1590.107477
ORF1ab/nsp12478K478NaaGaaT2021AY.50.000413
ORF1ab/nsp12478K478NaaGaaT1621AY.90.001082
ORF1ab/nsp12478K478NaaGaaT1920B.1.10.000345
ORF1ab/nsp12478K478NaaGaaT1919AY.4.20.000412
ORF1ab/nsp12478K478NaaGaaT1818AY.1000.000828
ORF1ab/nsp12478K478NaaGaaT1718B.1.1.5190.000675
ORF1ab/nsp12478K478NaaGaaT1717AY.470.000529
ORF1ab/nsp12478K478NaaGaaT1616R.10.00144
ORF1ab/nsp12478K478NaaGaaT1515B.1.177.520.026362
ORF1ab/nsp12478K478NaaGaaT1214AY.200.000466
ORF1ab/nsp12478K478NaaGaaT1414AY.75.10.002524
ORF1ab/nsp12478K478NaaGaaT1414AY.9.10.001172
ORF1ab/nsp12478K478NaaGaaT1414B.1.1600.000437
ORF1ab/nsp12478K478NaaGaaT1414B.1.3690.003993
ORF1ab/nsp12478K478NaaGaaT1414B.1.5260.000329
ORF1ab/nsp12478K478NaaGaaT1414B.1.6210.001239
ORF1ab/nsp12478K478NaaGaaT1414P.20.002613
ORF1ab/nsp12478K478NaaGaaT1313AY.480.006047
ORF1ab/nsp12478K478NaaGaaT1313AY.610.001362
ORF1ab/nsp12478K478NaaGaaT1313B.1.3670.010301
ORF1ab/nsp12478K478NaaGaaT1313C.370.001509
ORF1ab/nsp12478K478NaaGaaT1212AY.1200.000446
ORF1ab/nsp12478K478NaaGaaT1212B.1.258.170.001248
ORF1ab/nsp12478K478NaaGaaT1111AY.1170.00093
ORF1ab/nsp12478K478NaaGaaT1111AY.980.000869
ORF1ab/nsp12478K478NaaGaaT1111B.1.1.1821
ORF1ab/nsp12478K478NaaGaaT1111B.1.36.190.101852
ORF1ab/nsp12478K478NaaGaaT1111B.1.4290.000259
ORF1ab/nsp12478K478NaaGaaT1111Q.10.00139
ORF1ab/nsp12478K478NaaGaaT1010AY.1210.001353
ORF1ab/nsp12478K478NaaGaaT1010AY.46.60.000722
ORF1ab/nsp12478K478NaaGaaT99AY.330.000601
ORF1ab/nsp12478K478NaaGaaT99AY.5.40.00249
ORF1ab/nsp12478K478NaaGaaT99AY.750.000504
ORF1ab/nsp12478K478NaaGaaT99B.1.5250.001018
ORF1ab/nsp12478K478NaaGaaT88AY.230.000558
ORF1ab/nsp12478K478NaaGaaT88AY.340.000776
ORF1ab/nsp12478K478NaaGaaT88AY.420.000322
ORF1ab/nsp12478K478NaaGaaT88AY.460.000833
ORF1ab/nsp12478K478NaaGaaT28AY.690.000373
ORF1ab/nsp12478K478NaaGaaT88AY.98.10.000387
ORF1ab/nsp12478K478NaaGaaT88B.1.6090.003835
ORF1ab/nsp12478K478NaaGaaT77AY.1130.000997
ORF1ab/nsp12478K478NaaGaaT77AY.540.000667
ORF1ab/nsp12478K478NaaGaaT77AY.60.000288
ORF1ab/nsp12478K478NaaGaaT77B.1.110.30.005029
ORF1ab/nsp12478K478NaaGaaT77P.1.150.001626
ORF1ab/nsp12478K478NaaGaaT66AY.130.000966
ORF1ab/nsp12478K478NaaGaaT66AY.920.001724
ORF1ab/nsp12478K478NaaGaaT66B.1.1.280.001867
ORF1ab/nsp12478K478NaaGaaT66P.1.70.001916
ORF1ab/nsp12478K478NaaGaaT55AY.1190.000177
ORF1ab/nsp12478K478NaaGaaT55B.1.2210.000355
ORF1ab/nsp12478K478NaaGaaT55Q.80.000825
ORF1ab/nsp12478K478NaaGaaT44AY.100.00212
ORF1ab/nsp12478K478NaaGaaT44AY.1160.001147
ORF1ab/nsp12478K478NaaGaaT34AY.120.000948
ORF1ab/nsp12478K478NaaGaaT44AY.270.000259
ORF1ab/nsp12478K478NaaGaaT44AY.39.10.000158
ORF1ab/nsp12478K478NaaGaaT44AY.46.40.000658
ORF1ab/nsp12478K478NaaGaaT44AY.730.002661
ORF1ab/nsp12478K478NaaGaaT44AY.99.10.006211
ORF1ab/nsp12478K478NaaGaaT44AZ.30.006079
ORF1ab/nsp12478K478NaaGaaT44B0.000511
ORF1ab/nsp12478K478NaaGaaT44B.1.1.4370.041667
ORF1ab/nsp12478K478NaaGaaT44B.1.1.500.002716
ORF1ab/nsp12478K478NaaGaaT44B.1.177.40.000844
ORF1ab/nsp12478K478NaaGaaT44B.1.466.20.001565
ORF1ab/nsp12478K478NaaGaaT44C.160.004242
ORF1ab/nsp12478K478NaaGaaT44D.20.0003
ORF1ab/nsp12478K478NaaGaaT33A.2.50.001497
ORF1ab/nsp12478K478NaaGaaT33AY.380.001498
ORF1ab/nsp12478K478NaaGaaT33AY.410.000882
ORF1ab/nsp12478K478NaaGaaT33AY.450.000365
ORF1ab/nsp12478K478NaaGaaT33AY.560.004815
ORF1ab/nsp12478K478NaaGaaT33AY.650.001599
ORF1ab/nsp12478K478NaaGaaT33AY.700.000626
ORF1ab/nsp12478K478NaaGaaT33AY.99.20.000276
ORF1ab/nsp12478K478NaaGaaT33B.1.1.1530.003286
ORF1ab/nsp12478K478NaaGaaT33B.1.1.2160.002671
ORF1ab/nsp12478K478NaaGaaT33B.1.1.2770.002276
ORF1ab/nsp12478K478NaaGaaT33B.1.1.2910.002227
ORF1ab/nsp12478K478NaaGaaT33B.1.1.3180.000905
ORF1ab/nsp12478K478NaaGaaT33B.1.1.3260.005282
ORF1ab/nsp12478K478NaaGaaT33B.1.1.3770.004144
ORF1ab/nsp12478K478NaaGaaT33B.1.1110.003525
ORF1ab/nsp12478K478NaaGaaT33B.1.4160.003807
ORF1ab/nsp12478K478NaaGaaT33P.30.004785
ORF1ab/nsp12478K478NaaGaaT220.111111
ORF1ab/nsp12478K478NaaGaaT22AY.1060.00067
ORF1ab/nsp12478K478NaaGaaT22AY.190.002281
ORF1ab/nsp12478K478NaaGaaT22AY.3.10.000171
ORF1ab/nsp12478K478NaaGaaT22AY.300.000791
ORF1ab/nsp12478K478NaaGaaT22AY.360.000296
ORF1ab/nsp12478K478NaaGaaT22AY.4.40.000818
ORF1ab/nsp12478K478NaaGaaT22AY.510.001818
ORF1ab/nsp12478K478NaaGaaT22AY.520.001629
ORF1ab/nsp12478K478NaaGaaT22AY.620.000871
ORF1ab/nsp12478K478NaaGaaT12AY.680.000274
ORF1ab/nsp12478K478NaaGaaT22B.1.1.1250.020408
ORF1ab/nsp12478K478NaaGaaT22B.1.1.2090.017857
ORF1ab/nsp12478K478NaaGaaT22B.1.1.2140.000111
ORF1ab/nsp12478K478NaaGaaT12B.1.1.2940.001266
ORF1ab/nsp12478K478NaaGaaT22B.1.1.3060.000877
ORF1ab/nsp12478K478NaaGaaT22B.1.1.3540.008772
ORF1ab/nsp12478K478NaaGaaT22B.1.1.5170.013605
ORF1ab/nsp12478K478NaaGaaT22B.1.177.210.000153
ORF1ab/nsp12478K478NaaGaaT22B.1.177.70.00033
ORF1ab/nsp12478K478NaaGaaT22B.1.2430.000139
ORF1ab/nsp12478K478NaaGaaT22B.1.351.20.000605
ORF1ab/nsp12478K478NaaGaaT22B.1.36.370.005556
ORF1ab/nsp12478K478NaaGaaT22B.1.3610.002577
ORF1ab/nsp12478K478NaaGaaT22B.1.3710.002245
ORF1ab/nsp12478K478NaaGaaT22B.1.4080.00738
ORF1ab/nsp12478K478NaaGaaT22B.1.5950.000522
ORF1ab/nsp12478K478NaaGaaT22B.1.619.10.001283
ORF1ab/nsp12478K478NaaGaaT22C.360.001821
ORF1ab/nsp12478K478NaaGaaT22P.1.140.000096
ORF1ab/nsp12478K478NaaGaaT11A0.000387
ORF1ab/nsp12478K478NaaGaaT11A.20.000662
ORF1ab/nsp12478K478NaaGaaT11A.2.5.10.004808
ORF1ab/nsp12478K478NaaGaaT11A.23.10.000704
ORF1ab/nsp12478K478NaaGaaT11AY.1050.000643
ORF1ab/nsp12478K478NaaGaaT11AY.1100.000113
ORF1ab/nsp12478K478NaaGaaT11AY.1110.000183
ORF1ab/nsp12478K478NaaGaaT11AY.1140.000231
ORF1ab/nsp12478K478NaaGaaT11AY.120.20.001285
ORF1ab/nsp12478K478NaaGaaT11AY.160.00038
ORF1ab/nsp12478K478NaaGaaT11AY.320.000532
ORF1ab/nsp12478K478NaaGaaT11AY.4.10.000737
ORF1ab/nsp12478K478NaaGaaT11AY.4.2.10.000149
ORF1ab/nsp12478K478NaaGaaT11AY.5.30.000337
ORF1ab/nsp12478K478NaaGaaT11AY.590.00053
ORF1ab/nsp12478K478NaaGaaT11AY.630.000387
ORF1ab/nsp12478K478NaaGaaT11AY.640.000595
ORF1ab/nsp12478K478NaaGaaT11AY.7.20.000559
ORF1ab/nsp12478K478NaaGaaT11AY.770.001127
ORF1ab/nsp12478K478NaaGaaT11AY.80.000606
ORF1ab/nsp12478K478NaaGaaT11AY.800.001129
ORF1ab/nsp12478K478NaaGaaT11AY.840.000437
ORF1ab/nsp12478K478NaaGaaT11AY.880.000884
ORF1ab/nsp12478K478NaaGaaT11AY.990.001049
ORF1ab/nsp12478K478NaaGaaT11B.1.1.10.000327
ORF1ab/nsp12478K478NaaGaaT11B.1.1.1210.002427
ORF1ab/nsp12478K478NaaGaaT11B.1.1.1630.007634
ORF1ab/nsp12478K478NaaGaaT11B.1.1.1890.001513
ORF1ab/nsp12478K478NaaGaaT11B.1.1.2070.001182
ORF1ab/nsp12478K478NaaGaaT11B.1.1.2220.000204
ORF1ab/nsp12478K478NaaGaaT11B.1.1.2280.003049
ORF1ab/nsp12478K478NaaGaaT11B.1.1.250.000569
ORF1ab/nsp12478K478NaaGaaT11B.1.1.270.00565
ORF1ab/nsp12478K478NaaGaaT11B.1.1.2980.000862
ORF1ab/nsp12478K478NaaGaaT11B.1.1.3030.002762
ORF1ab/nsp12478K478NaaGaaT11B.1.1.3110.000358
ORF1ab/nsp12478K478NaaGaaT11B.1.1.3220.008772
ORF1ab/nsp12478K478NaaGaaT11B.1.1.330.000421
ORF1ab/nsp12478K478NaaGaaT11B.1.1.3340.016393
ORF1ab/nsp12478K478NaaGaaT11B.1.1.3480.000796
ORF1ab/nsp12478K478NaaGaaT11B.1.1.3980.003226
ORF1ab/nsp12478K478NaaGaaT11B.1.1.4060.006494
ORF1ab/nsp12478K478NaaGaaT11B.1.1.4090.002833
ORF1ab/nsp12478K478NaaGaaT11B.1.1.4340.000349
ORF1ab/nsp12478K478NaaGaaT11B.1.1.4630.0625
ORF1ab/nsp12478K478NaaGaaT11B.1.1.590.006494
ORF1ab/nsp12478K478NaaGaaT11B.1.1.700.000341
ORF1ab/nsp12478K478NaaGaaT11B.1.1.980.018519
ORF1ab/nsp12478K478NaaGaaT11B.1.160.140.002119
ORF1ab/nsp12478K478NaaGaaT11B.1.177.350.000691
ORF1ab/nsp12478K478NaaGaaT11B.1.177.60.000977
ORF1ab/nsp12478K478NaaGaaT11B.1.177.650.000665
ORF1ab/nsp12478K478NaaGaaT11B.1.177.730.000566
ORF1ab/nsp12478K478NaaGaaT11B.1.177.820.000477
ORF1ab/nsp12478K478NaaGaaT11B.1.177.830.001481
ORF1ab/nsp12478K478NaaGaaT11B.1.2100.002132
ORF1ab/nsp12478K478NaaGaaT11B.1.2130.014925
ORF1ab/nsp12478K478NaaGaaT11B.1.220.001318
ORF1ab/nsp12478K478NaaGaaT11B.1.2220.001692
ORF1ab/nsp12478K478NaaGaaT11B.1.2360.002053
ORF1ab/nsp12478K478NaaGaaT11B.1.3110.000275
ORF1ab/nsp12478K478NaaGaaT11B.1.3200.001245
ORF1ab/nsp12478K478NaaGaaT11B.1.3250.006897
ORF1ab/nsp12478K478NaaGaaT11B.1.36.220.001208
ORF1ab/nsp12478K478NaaGaaT11B.1.36.290.000517
ORF1ab/nsp12478K478NaaGaaT11B.1.36.390.002217
ORF1ab/nsp12478K478NaaGaaT11B.1.36.70.004
ORF1ab/nsp12478K478NaaGaaT11B.1.36.80.001
ORF1ab/nsp12478K478NaaGaaT11B.1.3800.006623
ORF1ab/nsp12478K478NaaGaaT11B.1.3810.007812
ORF1ab/nsp12478K478NaaGaaT11B.1.416.10.001563
ORF1ab/nsp12478K478NaaGaaT11B.1.4460.02
ORF1ab/nsp12478K478NaaGaaT11B.1.4560.003268
ORF1ab/nsp12478K478NaaGaaT11B.1.4590.004082
ORF1ab/nsp12478K478NaaGaaT11B.1.4710.002732
ORF1ab/nsp12478K478NaaGaaT11B.1.4800.002488
ORF1ab/nsp12478K478NaaGaaT11B.1.5150.014493
ORF1ab/nsp12478K478NaaGaaT11B.1.5170.000427
ORF1ab/nsp12478K478NaaGaaT11B.1.5420.03125
ORF1ab/nsp12478K478NaaGaaT11B.1.5580.004566
ORF1ab/nsp12478K478NaaGaaT11B.1.5650.00081
ORF1ab/nsp12478K478NaaGaaT11B.1.5750.000303
ORF1ab/nsp12478K478NaaGaaT11B.1.5960.000087
ORF1ab/nsp12478K478NaaGaaT11B.1.596.10.009346
ORF1ab/nsp12478K478NaaGaaT11B.1.6180.004032
ORF1ab/nsp12478K478NaaGaaT11B.1.621.10.000506
ORF1ab/nsp12478K478NaaGaaT11B.1.6280.000352
ORF1ab/nsp12478K478NaaGaaT11B.1.6360.006711
ORF1ab/nsp12478K478NaaGaaT11B.1.80.001972
ORF1ab/nsp12478K478NaaGaaT11B.60.00091
ORF1ab/nsp12478K478NaaGaaT11C.140.004329
ORF1ab/nsp12478K478NaaGaaT11C.270.018519
ORF1ab/nsp12478K478NaaGaaT11C.280.04
ORF1ab/nsp12478K478NaaGaaT11C.36.30.000567
ORF1ab/nsp12478K478NaaGaaT11P.1.100.000269
ORF1ab/nsp12478K478NaaGaaT11P.1.120.000484
ORF1ab/nsp12478K478NaaGaaT11P.1.90.004808
ORF1ab/nsp12478K478NaaGaaT11S.10.00495

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.