CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 46

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1246A46SA4438SnonsynGctTct946946113576-13578
ORF1ab/nsp1246A46AA4438AsyngcTgcC2191420.64840213576-13578
ORF1ab/nsp1246A46AA4438AsyngcTgcA219610.27853913576-13578
ORF1ab/nsp1246A46AA4438AsyngcTgcG219160.073059413576-13578
ORF1ab/nsp1246A46GA4438GnonsyngCtgGt8080113576-13578
ORF1ab/nsp1246A46VA4438VnonsyngCtgTt7878113576-13578
ORF1ab/nsp1246A46delA4438deldelGCT---4444113576-13578
ORF1ab/nsp1246A46TA4438TnonsynGctAct32300.937513576-13578
ORF1ab/nsp1246A46TA4438TnonsynGcTAcC3220.062513576-13578
ORF1ab/nsp1246A46DA4438DnonsyngCtgAt77113576-13578
ORF1ab/nsp1246A46PA4438PnonsynGctCct66113576-13578
ORF1ab/nsp1246A46CA4438CnonsynGCtTGt11113576-13578
ORF1ab/nsp1246A46XA4438XnonsynGCTTAG11113576-13578
ORF1ab/nsp1246A46FA4438FnonsynGCtTTt11113576-13578
ORF1ab/nsp1246A46del1A4438del1delGCT-TA11113576-13578

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1246A46SGctTct946946All0.000181
ORF1ab/nsp1246A46SGctTct307307B.1.1.5190.012191
ORF1ab/nsp1246A46AgcTgcC142219All0.000027
ORF1ab/nsp1246A46AgcTgcA61219All0.000012
ORF1ab/nsp1246A46AgcTgcG16219All0.000003
ORF1ab/nsp1246A46SGctTct111111B.1.617.20.000418
ORF1ab/nsp1246A46GgCtgGt8080All0.000015
ORF1ab/nsp1246A46VgCtgTt7878All0.000015
ORF1ab/nsp1246A46SGctTct6363AY.40.000098
ORF1ab/nsp1246A46delGCT---4444All0.000008
ORF1ab/nsp1246A46SGctTct4444B.1.1.70.000039
ORF1ab/nsp1246A46AgcTgcC3941AY.440.000237
ORF1ab/nsp1246A46AgcTgcA241AY.440.000012
ORF1ab/nsp1246A46GgCtgGt3939AY.990.040923
ORF1ab/nsp1246A46AgcTgcA3939B.1.5170.016652
ORF1ab/nsp1246A46AgcTgcC3737AY.250.000223
ORF1ab/nsp1246A46SGctTct3535AY.610.003667
ORF1ab/nsp1246A46SGctTct3333B.1.10.000599
ORF1ab/nsp1246A46TGctAct3032All0.000006
ORF1ab/nsp1246A46TGcTAcC232All0
ORF1ab/nsp1246A46SGctTct3131AY.140.002728
ORF1ab/nsp1246A46SGctTct2626AY.1030.000161
ORF1ab/nsp1246A46SGctTct2525AY.250.00015
ORF1ab/nsp1246A46SGctTct2424AY.30.000239
ORF1ab/nsp1246A46SGctTct2424B.1.177.210.001835
ORF1ab/nsp1246A46GgCtgGt2020B.1.617.20.000075
ORF1ab/nsp1246A46AgcTgcG1318B.1.20.000114
ORF1ab/nsp1246A46AgcTgcC518B.1.20.000044
ORF1ab/nsp1246A46SGctTct1616AY.75.10.002885
ORF1ab/nsp1246A46SGctTct1616B.10.000147
ORF1ab/nsp1246A46SGctTct1414B.1.1770.000184
ORF1ab/nsp1246A46SGctTct1414P.10.000221
ORF1ab/nsp1246A46SGctTct1313B.1.1.3500.52
ORF1ab/nsp1246A46AgcTgcC1113B.1.1.70.00001
ORF1ab/nsp1246A46AgcTgcA213B.1.1.70.000002
ORF1ab/nsp1246A46SGctTct1212AY.200.000466
ORF1ab/nsp1246A46SGctTct1111AY.290.000174
ORF1ab/nsp1246A46SGctTct1111AY.390.000272
ORF1ab/nsp1246A46VgCtgTt1111B.1.1.5190.000437
ORF1ab/nsp1246A46SGctTct1010AY.90.000676
ORF1ab/nsp1246A46SGctTct1010B.1.5170.00427
ORF1ab/nsp1246A46SGctTct99AY.440.000055
ORF1ab/nsp1246A46delGCT---99B.1.1.70.000008
ORF1ab/nsp1246A46AgcTgcC78AY.40.000011
ORF1ab/nsp1246A46AgcTgcA18AY.40.000002
ORF1ab/nsp1246A46SGctTct88AY.430.000035
ORF1ab/nsp1246A46AgcTgcA88B.1.2580.000532
ORF1ab/nsp1246A46DgCtgAt77All0.000001
ORF1ab/nsp1246A46GgCtgGt77AY.1020.000186
ORF1ab/nsp1246A46VgCtgTt77AY.40.000011
ORF1ab/nsp1246A46GgCtgGt77AY.430.000031
ORF1ab/nsp1246A46PGctCct66All0.000001
ORF1ab/nsp1246A46SGctTct66AY.270.000388
ORF1ab/nsp1246A46VgCtgTt66B.1.20.000053
ORF1ab/nsp1246A46AgcTgcC35AY.230.000209
ORF1ab/nsp1246A46AgcTgcA15AY.230.00007
ORF1ab/nsp1246A46AgcTgcG15AY.230.00007
ORF1ab/nsp1246A46SGctTct55AY.50.000103
ORF1ab/nsp1246A46SGctTct55B.1.20.000044
ORF1ab/nsp1246A46VgCtgTt55B.1.2580.000333
ORF1ab/nsp1246A46SGctTct55B.1.5960.000436
ORF1ab/nsp1246A46AgcTgcC44AY.1030.000025
ORF1ab/nsp1246A46TGctAct44AY.1030.000025
ORF1ab/nsp1246A46AgcTgcC44AY.260.000113
ORF1ab/nsp1246A46delGCT---44AY.430.000018
ORF1ab/nsp1246A46SGctTct44AY.710.0019
ORF1ab/nsp1246A46SGctTct44AY.9.20.000147
ORF1ab/nsp1246A46VgCtgTt44B.10.000037
ORF1ab/nsp1246A46AgcTgcC34B.10.000027
ORF1ab/nsp1246A46AgcTgcA14B.10.000009
ORF1ab/nsp1246A46SGctTct44B.1.1.1710.014706
ORF1ab/nsp1246A46VgCtgTt44B.1.1.70.000004
ORF1ab/nsp1246A46SGctTct33AY.1020.00008
ORF1ab/nsp1246A46GgCtgGt33AY.1060.001005
ORF1ab/nsp1246A46SGctTct33AY.1200.000112
ORF1ab/nsp1246A46TGctAct33AY.250.000018
ORF1ab/nsp1246A46TGctAct33AY.40.000005
ORF1ab/nsp1246A46SGctTct33AY.450.000365
ORF1ab/nsp1246A46AgcTgcA33AY.880.002653
ORF1ab/nsp1246A46DgCtgAt33B.10.000027
ORF1ab/nsp1246A46VgCtgTt33B.1.1770.00004
ORF1ab/nsp1246A46TGctAct33B.1.20.000026
ORF1ab/nsp1246A46VgCtgTt33B.1.4290.000071
ORF1ab/nsp1246A46SGctTct33B.1.5300.021429
ORF1ab/nsp1246A46AgcTgcC33B.1.617.20.000011
ORF1ab/nsp1246A46VgCtgTt22AY.1030.000012
ORF1ab/nsp1246A46SGctTct22AY.1210.000271
ORF1ab/nsp1246A46VgCtgTt22AY.130.000322
ORF1ab/nsp1246A46delGCT---22AY.250.000012
ORF1ab/nsp1246A46VgCtgTt22AY.30.00002
ORF1ab/nsp1246A46AgcTgcG12AY.30.00001
ORF1ab/nsp1246A46AgcTgcC12AY.30.00001
ORF1ab/nsp1246A46SGctTct22AY.3.10.000171
ORF1ab/nsp1246A46SGctTct22AY.320.001065
ORF1ab/nsp1246A46AgcTgcC22AY.330.000134
ORF1ab/nsp1246A46delGCT---22AY.40.000003
ORF1ab/nsp1246A46delGCT---22AY.4.50.000215
ORF1ab/nsp1246A46VgCtgTt22AY.470.000062
ORF1ab/nsp1246A46AgcTgcC22AY.610.00021
ORF1ab/nsp1246A46TGctAct22AY.610.00021
ORF1ab/nsp1246A46AgcTgcC22AY.740.000231
ORF1ab/nsp1246A46AgcTgcA12AY.750.000056
ORF1ab/nsp1246A46AgcTgcC12AY.750.000056
ORF1ab/nsp1246A46PGctCct22B.1.1.70.000002
ORF1ab/nsp1246A46TGctAct22B.1.1.70.000002
ORF1ab/nsp1246A46AgcTgcC22B.1.1600.000062
ORF1ab/nsp1246A46TGctAct22B.1.2100.004264
ORF1ab/nsp1246A46TGcTAcC22B.1.3510.000059
ORF1ab/nsp1246A46VgCtgTt22B.1.617.20.000008
ORF1ab/nsp1246A46delGCT---22P.10.000032
ORF1ab/nsp1246A46delGCT---22P.1.150.000465
ORF1ab/nsp1246A46TGctAct22P.20.000373
ORF1ab/nsp1246A46GgCtgGt110.055556
ORF1ab/nsp1246A46SGctTct110.055556
ORF1ab/nsp1246A46CGCtTGt110.055556
ORF1ab/nsp1246A46VgCtgTt11A.10.000282
ORF1ab/nsp1246A46XGCTTAG11All0
ORF1ab/nsp1246A46del1GCT-TA11All0
ORF1ab/nsp1246A46FGCtTTt11All0
ORF1ab/nsp1246A46CGCtTGt11All0
ORF1ab/nsp1246A46SGctTct11AY.1100.000113
ORF1ab/nsp1246A46PGctCct11AY.1130.000142
ORF1ab/nsp1246A46SGctTct11AY.1190.000035
ORF1ab/nsp1246A46delGCT---11AY.1190.000035
ORF1ab/nsp1246A46delGCT---11AY.1200.000037
ORF1ab/nsp1246A46AgcTgcC11AY.200.000039
ORF1ab/nsp1246A46GgCtgGt11AY.200.000039
ORF1ab/nsp1246A46TGctAct11AY.260.000028
ORF1ab/nsp1246A46VgCtgTt11AY.260.000028
ORF1ab/nsp1246A46VgCtgTt11AY.290.000016
ORF1ab/nsp1246A46VgCtgTt11AY.320.000532
ORF1ab/nsp1246A46delGCT---11AY.34.10.00051
ORF1ab/nsp1246A46AgcTgcA11AY.390.000025
ORF1ab/nsp1246A46GgCtgGt11AY.390.000025
ORF1ab/nsp1246A46SGctTct11AY.420.00004
ORF1ab/nsp1246A46AgcTgcC11AY.430.000004
ORF1ab/nsp1246A46DgCtgAt11AY.430.000004
ORF1ab/nsp1246A46TGctAct11AY.430.000004
ORF1ab/nsp1246A46GgCtgGt11AY.460.000104
ORF1ab/nsp1246A46PGctCct11AY.460.000104
ORF1ab/nsp1246A46VgCtgTt11AY.50.000021
ORF1ab/nsp1246A46SGctTct11AY.530.000288
ORF1ab/nsp1246A46VgCtgTt11AY.540.000095
ORF1ab/nsp1246A46SGctTct11AY.590.00053
ORF1ab/nsp1246A46SGctTct11AY.60.000041
ORF1ab/nsp1246A46delGCT---11AY.60.000041
ORF1ab/nsp1246A46delGCT---11AY.660.00107
ORF1ab/nsp1246A46SGctTct11AY.680.000274
ORF1ab/nsp1246A46SGctTct11AY.70.000196
ORF1ab/nsp1246A46SGctTct11AY.770.001127
ORF1ab/nsp1246A46SGctTct11AY.880.000884
ORF1ab/nsp1246A46delGCT---11AY.9.20.000037
ORF1ab/nsp1246A46AgcTgcC11AY.9.20.000037
ORF1ab/nsp1246A46SGctTct11AY.980.000079
ORF1ab/nsp1246A46delGCT---11AY.98.10.000048
ORF1ab/nsp1246A46AgcTgcC11AY.98.10.000048
ORF1ab/nsp1246A46delGCT---11AY.990.001049
ORF1ab/nsp1246A46FGCtTTt11B.10.000009
ORF1ab/nsp1246A46PGctCct11B.10.000009
ORF1ab/nsp1246A46TGctAct11B.10.000009
ORF1ab/nsp1246A46delGCT---11B.1.10.000018
ORF1ab/nsp1246A46PGctCct11B.1.10.000018
ORF1ab/nsp1246A46TGctAct11B.1.10.000018
ORF1ab/nsp1246A46VgCtgTt11B.1.10.000018
ORF1ab/nsp1246A46delGCT---11B.1.1.10.000327
ORF1ab/nsp1246A46delGCT---11B.1.1.1390.022727
ORF1ab/nsp1246A46SGctTct11B.1.1.2140.000055
ORF1ab/nsp1246A46AgcTgcC11B.1.1.250.000569
ORF1ab/nsp1246A46VgCtgTt11B.1.1.2840.000107
ORF1ab/nsp1246A46VgCtgTt11B.1.1.2910.000742
ORF1ab/nsp1246A46AgcTgcC11B.1.1.2980.000862
ORF1ab/nsp1246A46AgcTgcC11B.1.1.3060.000438
ORF1ab/nsp1246A46delGCT---11B.1.1.3480.000796
ORF1ab/nsp1246A46delGCT---11B.1.1.370.000193
ORF1ab/nsp1246A46SGctTct11B.1.1.630.000386
ORF1ab/nsp1246A46del1GCT-TA11B.1.1.70.000001
ORF1ab/nsp1246A46VgCtgTt11B.1.1.700.000341
ORF1ab/nsp1246A46AgcTgcC11B.1.177.150.000631
ORF1ab/nsp1246A46SGctTct11B.1.177.320.00135
ORF1ab/nsp1246A46SGctTct11B.1.177.50.001242
ORF1ab/nsp1246A46TGctAct11B.1.177.540.000606
ORF1ab/nsp1246A46VgCtgTt11B.1.177.570.000281
ORF1ab/nsp1246A46SGctTct11B.1.177.650.000665
ORF1ab/nsp1246A46AgcTgcC11B.1.177.860.000183
ORF1ab/nsp1246A46VgCtgTt11B.1.1890.004292
ORF1ab/nsp1246A46delGCT---11B.1.20.000009
ORF1ab/nsp1246A46SGctTct11B.1.2060.000816
ORF1ab/nsp1246A46VgCtgTt11B.1.2210.000071
ORF1ab/nsp1246A46VgCtgTt11B.1.2340.000132
ORF1ab/nsp1246A46VgCtgTt11B.1.3110.000275
ORF1ab/nsp1246A46VgCtgTt11B.1.3240.001605
ORF1ab/nsp1246A46SGctTct11B.1.3510.00003
ORF1ab/nsp1246A46SGctTct11B.1.360.000146
ORF1ab/nsp1246A46delGCT---11B.1.36.180.00042
ORF1ab/nsp1246A46VgCtgTt11B.1.3670.000792
ORF1ab/nsp1246A46SGctTct11B.1.3800.006623
ORF1ab/nsp1246A46XGCTTAG11B.1.4150.014286
ORF1ab/nsp1246A46VgCtgTt11B.1.4160.001269
ORF1ab/nsp1246A46VgCtgTt11B.1.4260.001009
ORF1ab/nsp1246A46VgCtgTt11B.1.4270.00005
ORF1ab/nsp1246A46AgcTgcC11B.1.4290.000024
ORF1ab/nsp1246A46SGctTct11B.1.466.20.000391
ORF1ab/nsp1246A46AgcTgcA11B.1.466.20.000391
ORF1ab/nsp1246A46TGctAct11B.1.5250.000113
ORF1ab/nsp1246A46AgcTgcG11B.1.5250.000113
ORF1ab/nsp1246A46SGctTct11B.1.5250.000113
ORF1ab/nsp1246A46TGctAct11B.1.5260.000024
ORF1ab/nsp1246A46VgCtgTt11B.1.5260.000024
ORF1ab/nsp1246A46SGctTct11B.1.5330.009615
ORF1ab/nsp1246A46VgCtgTt11B.1.5580.004566
ORF1ab/nsp1246A46SGctTct11B.1.5760.000907
ORF1ab/nsp1246A46VgCtgTt11B.1.5810.009434
ORF1ab/nsp1246A46VgCtgTt11B.1.5950.000261
ORF1ab/nsp1246A46AgcTgcA11B.1.5960.000087
ORF1ab/nsp1246A46DgCtgAt11B.1.5960.000087
ORF1ab/nsp1246A46AgcTgcC11B.1.5990.00365
ORF1ab/nsp1246A46SGctTct11B.1.617.10.000129
ORF1ab/nsp1246A46TGctAct11B.1.617.20.000004
ORF1ab/nsp1246A46delGCT---11B.1.617.20.000004
ORF1ab/nsp1246A46delGCT---11B.1.621.10.000506
ORF1ab/nsp1246A46AgcTgcC11B.1.80.001972
ORF1ab/nsp1246A46SGctTct11B.1.88.10.004808
ORF1ab/nsp1246A46DgCtgAt11B.310.003731
ORF1ab/nsp1246A46AgcTgcC11B.400.000364
ORF1ab/nsp1246A46delGCT---11C.170.055556
ORF1ab/nsp1246A46VgCtgTt11C.310.017857
ORF1ab/nsp1246A46delGCT---11C.370.000116
ORF1ab/nsp1246A46AgcTgcC11D.20.000075
ORF1ab/nsp1246A46DgCtgAt11D.20.000075
ORF1ab/nsp1246A46AgcTgcC11P.10.000016
ORF1ab/nsp1246A46TGctAct11P.1.100.000269
ORF1ab/nsp1246A46delGCT---11P.20.000187
ORF1ab/nsp1246A46SGctTct11P.20.000187
ORF1ab/nsp1246A46delGCT---11Q.10.000126
ORF1ab/nsp1246A46AgcTgcC11Q.10.000126