CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 46 | A46S | A4438S | nonsyn | Gct | Tct | 946 | 946 | 1 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46A | A4438A | syn | gcT | gcC | 219 | 142 | 0.648402 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46A | A4438A | syn | gcT | gcA | 219 | 61 | 0.278539 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46A | A4438A | syn | gcT | gcG | 219 | 16 | 0.0730594 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46G | A4438G | nonsyn | gCt | gGt | 80 | 80 | 1 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46V | A4438V | nonsyn | gCt | gTt | 78 | 78 | 1 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46del | A4438del | del | GCT | --- | 44 | 44 | 1 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46T | A4438T | nonsyn | Gct | Act | 32 | 30 | 0.9375 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46T | A4438T | nonsyn | GcT | AcC | 32 | 2 | 0.0625 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46D | A4438D | nonsyn | gCt | gAt | 7 | 7 | 1 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46P | A4438P | nonsyn | Gct | Cct | 6 | 6 | 1 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46C | A4438C | nonsyn | GCt | TGt | 1 | 1 | 1 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46X | A4438X | nonsyn | GCT | TAG | 1 | 1 | 1 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46F | A4438F | nonsyn | GCt | TTt | 1 | 1 | 1 | 13576-13578 |
ORF1ab/nsp12 | 46 | A46del1 | A4438del1 | del | GCT | -TA | 1 | 1 | 1 | 13576-13578 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 946 | 946 | All | 0.000181 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 307 | 307 | B.1.1.519 | 0.012191 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 142 | 219 | All | 0.000027 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 61 | 219 | All | 0.000012 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcG | 16 | 219 | All | 0.000003 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 111 | 111 | B.1.617.2 | 0.000418 |
ORF1ab/nsp12 | 46 | A46G | gCt | gGt | 80 | 80 | All | 0.000015 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 78 | 78 | All | 0.000015 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 63 | 63 | AY.4 | 0.000098 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 44 | 44 | All | 0.000008 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 39 | 41 | AY.44 | 0.000237 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 2 | 41 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 46 | A46G | gCt | gGt | 39 | 39 | AY.99 | 0.040923 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 39 | 39 | B.1.517 | 0.016652 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 37 | 37 | AY.25 | 0.000223 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 35 | 35 | AY.61 | 0.003667 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 33 | 33 | B.1.1 | 0.000599 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 30 | 32 | All | 0.000006 |
ORF1ab/nsp12 | 46 | A46T | GcT | AcC | 2 | 32 | All | 0 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 31 | 31 | AY.14 | 0.002728 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 26 | 26 | AY.103 | 0.000161 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 24 | 24 | AY.3 | 0.000239 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 24 | 24 | B.1.177.21 | 0.001835 |
ORF1ab/nsp12 | 46 | A46G | gCt | gGt | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcG | 13 | 18 | B.1.2 | 0.000114 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 5 | 18 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 16 | 16 | AY.75.1 | 0.002885 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 13 | 13 | B.1.1.350 | 0.52 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 11 | 13 | B.1.1.7 | 0.00001 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 2 | 13 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 10 | 10 | AY.9 | 0.000676 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 10 | 10 | B.1.517 | 0.00427 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 7 | 8 | AY.4 | 0.000011 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 1 | 8 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp12 | 46 | A46D | gCt | gAt | 7 | 7 | All | 0.000001 |
ORF1ab/nsp12 | 46 | A46G | gCt | gGt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp12 | 46 | A46G | gCt | gGt | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp12 | 46 | A46P | Gct | Cct | 6 | 6 | All | 0.000001 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 3 | 5 | AY.23 | 0.000209 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 1 | 5 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcG | 1 | 5 | AY.23 | 0.00007 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 4 | 4 | B.1.1.171 | 0.014706 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp12 | 46 | A46G | gCt | gGt | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp12 | 46 | A46D | gCt | gAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 3 | 3 | B.1.530 | 0.021429 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcG | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 46 | A46P | Gct | Cct | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp12 | 46 | A46T | GcT | AcC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 46 | A46G | gCt | gGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 46 | A46C | GCt | TGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp12 | 46 | A46X | GCT | TAG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 46 | A46del1 | GCT | -TA | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 46 | A46F | GCt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 46 | A46C | GCt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp12 | 46 | A46P | Gct | Cct | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 46 | A46G | gCt | gGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 46 | A46G | gCt | gGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 46 | A46D | gCt | gAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 46 | A46G | gCt | gGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 46 | A46P | Gct | Cct | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 46 | A46F | GCt | TTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 46 | A46P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 46 | A46P | Gct | Cct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp12 | 46 | A46del1 | GCT | -TA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp12 | 46 | A46X | GCT | TAG | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 46 | A46D | gCt | gAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp12 | 46 | A46D | gCt | gAt | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp12 | 46 | A46V | gCt | gTt | 1 | 1 | C.31 | 0.017857 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 46 | A46D | gCt | gAt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 46 | A46T | Gct | Act | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 46 | A46S | Gct | Tct | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp12 | 46 | A46del | GCT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp12 | 46 | A46A | gcT | gcC | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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