CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 451

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12451S451SS4843SsynagCagT15131513114791-14793
ORF1ab/nsp12451S451IS4843InonsynaGcaTc490490114791-14793
ORF1ab/nsp12451S451CS4843CnonsynAgcTgc374374114791-14793
ORF1ab/nsp12451S451RS4843RnonsynagCagA2282060.90350914791-14793
ORF1ab/nsp12451S451RS4843RnonsynAgcCgc228180.078947414791-14793
ORF1ab/nsp12451S451RS4843RnonsynagCagG22840.017543914791-14793
ORF1ab/nsp12451S451GS4843GnonsynAgcGgc9494114791-14793
ORF1ab/nsp12451S451NS4843NnonsynaGcaAc8484114791-14793
ORF1ab/nsp12451S451delS4843deldelAGC---5353114791-14793
ORF1ab/nsp12451S451del2S4843del2delaGCa--46450.97826114791-14793
ORF1ab/nsp12451S451del2S4843del2delAGc--c4610.021739114791-14793
ORF1ab/nsp12451S451del1S4843del1delagCag-31260.8387114791-14793
ORF1ab/nsp12451S451del1S4843del1delaGca-c3130.096774214791-14793
ORF1ab/nsp12451S451del1S4843del1delaGCa-N3110.032258114791-14793
ORF1ab/nsp12451S451del1S4843del1delAgc-gc3110.032258114791-14793
ORF1ab/nsp12451S451TS4843TnonsynaGcaCc430.7514791-14793
ORF1ab/nsp12451S451TS4843TnonsynaGCaCT410.2514791-14793
ORF1ab/nsp12451S451KS4843KnonsynaGCaAA11114791-14793
ORF1ab/nsp12451S451WS4843WnonsynAgCTgG11114791-14793

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12451S451SagCagT15131513All0.000289
ORF1ab/nsp12451S451IaGcaTc490490All0.000094
ORF1ab/nsp12451S451SagCagT454454B.1.1.70.000406
ORF1ab/nsp12451S451CAgcTgc374374All0.000072
ORF1ab/nsp12451S451CAgcTgc242242AY.99.20.022302
ORF1ab/nsp12451S451RagCagA206228All0.000039
ORF1ab/nsp12451S451RAgcCgc18228All0.000003
ORF1ab/nsp12451S451RagCagG4228All0.000001
ORF1ab/nsp12451S451IaGcaTc200200B.1.1.2530.501253
ORF1ab/nsp12451S451SagCagT180180AY.40.00028
ORF1ab/nsp12451S451RagCagA155155B.1.2430.010786
ORF1ab/nsp12451S451IaGcaTc111111B.1.1.70.000099
ORF1ab/nsp12451S451GAgcGgc9494All0.000018
ORF1ab/nsp12451S451SagCagT8585B.10.000779
ORF1ab/nsp12451S451NaGcaAc8484All0.000016
ORF1ab/nsp12451S451SagCagT6969AY.1030.000428
ORF1ab/nsp12451S451IaGcaTc6464AY.260.001812
ORF1ab/nsp12451S451CAgcTgc5959B.1.1.450.830986
ORF1ab/nsp12451S451GAgcGgc5858AY.430.000257
ORF1ab/nsp12451S451delAGC---5353All0.00001
ORF1ab/nsp12451S451SagCagT4949B.1.10.000889
ORF1ab/nsp12451S451del2aGCa--4546All0.000009
ORF1ab/nsp12451S451del2AGc--c146All0
ORF1ab/nsp12451S451SagCagT4444B.1.617.20.000166
ORF1ab/nsp12451S451CAgcTgc4040B.1.1.70.000036
ORF1ab/nsp12451S451SagCagT3737AY.360.005484
ORF1ab/nsp12451S451SagCagT3535AY.430.000155
ORF1ab/nsp12451S451SagCagT3434B.1.20.000299
ORF1ab/nsp12451S451del2aGCa--3233B.1.1.70.000029
ORF1ab/nsp12451S451del2AGc--c133B.1.1.70.000001
ORF1ab/nsp12451S451del1agCag-2631All0.000005
ORF1ab/nsp12451S451del1aGca-c331All0.000001
ORF1ab/nsp12451S451del1aGCa-N131All0
ORF1ab/nsp12451S451del1Agc-gc131All0
ORF1ab/nsp12451S451SagCagT3030B.1.4290.000706
ORF1ab/nsp12451S451del1agCag-2529B.1.1.70.000022
ORF1ab/nsp12451S451del1aGca-c329B.1.1.70.000003
ORF1ab/nsp12451S451del1aGCa-N129B.1.1.70.000001
ORF1ab/nsp12451S451delAGC---2626B.1.1.70.000023
ORF1ab/nsp12451S451SagCagT2626C.36.30.014748
ORF1ab/nsp12451S451IaGcaTc2222AY.430.000097
ORF1ab/nsp12451S451SagCagT2121P.10.000331
ORF1ab/nsp12451S451SagCagT2020B.1.1.2030.338983
ORF1ab/nsp12451S451IaGcaTc1919AY.40.00003
ORF1ab/nsp12451S451RagCagA1718AY.40.000026
ORF1ab/nsp12451S451RAgcCgc118AY.40.000002
ORF1ab/nsp12451S451SagCagT1818B.1.1770.000237
ORF1ab/nsp12451S451RagCagA1317B.1.1.70.000012
ORF1ab/nsp12451S451RAgcCgc417B.1.1.70.000004
ORF1ab/nsp12451S451SagCagT1717B.1.5260.0004
ORF1ab/nsp12451S451SagCagT1515AY.390.000371
ORF1ab/nsp12451S451SagCagT1515AY.9.10.001256
ORF1ab/nsp12451S451SagCagT1515AY.9.20.000551
ORF1ab/nsp12451S451SagCagT1414B.1.177.600.003058
ORF1ab/nsp12451S451SagCagT1414B.1.2430.000974
ORF1ab/nsp12451S451SagCagT1313AY.250.000078
ORF1ab/nsp12451S451SagCagT1313AY.260.000368
ORF1ab/nsp12451S451SagCagT1313AY.440.000079
ORF1ab/nsp12451S451NaGcaAc1313B.1.438.10.001394
ORF1ab/nsp12451S451SagCagT1212AY.4.20.00026
ORF1ab/nsp12451S451NaGcaAc1212AY.750.000672
ORF1ab/nsp12451S451SagCagT1212B.1.3510.000357
ORF1ab/nsp12451S451GAgcGgc1111AY.1030.000068
ORF1ab/nsp12451S451SagCagT1111B.1.2580.000732
ORF1ab/nsp12451S451SagCagT1010AY.130.00161
ORF1ab/nsp12451S451CAgcTgc1010B.10.000092
ORF1ab/nsp12451S451SagCagT1010B.1.1.3500.4
ORF1ab/nsp12451S451SagCagT99AY.1020.000239
ORF1ab/nsp12451S451NaGcaAc99AY.450.001095
ORF1ab/nsp12451S451SagCagT88B.1.1.2910.005939
ORF1ab/nsp12451S451NaGcaAc88B.1.1.70.000007
ORF1ab/nsp12451S451SagCagT88B.1.2340.001056
ORF1ab/nsp12451S451IaGcaTc88B.1.2580.000532
ORF1ab/nsp12451S451SagCagT88B.1.4270.000404
ORF1ab/nsp12451S451IaGcaTc88B.1.617.20.00003
ORF1ab/nsp12451S451IaGcaTc77AY.250.000042
ORF1ab/nsp12451S451GAgcGgc77B.1.1.70.000006
ORF1ab/nsp12451S451CAgcTgc77B.1.617.20.000026
ORF1ab/nsp12451S451SagCagT77Q.10.000884
ORF1ab/nsp12451S451SagCagT66AY.1000.000276
ORF1ab/nsp12451S451SagCagT66AY.1180.000376
ORF1ab/nsp12451S451IaGcaTc66AY.1190.000212
ORF1ab/nsp12451S451SagCagT66AY.290.000095
ORF1ab/nsp12451S451IaGcaTc66AY.390.000148
ORF1ab/nsp12451S451IaGcaTc66B.10.000055
ORF1ab/nsp12451S451RagCagA46B.10.000037
ORF1ab/nsp12451S451RagCagG16B.10.000009
ORF1ab/nsp12451S451RAgcCgc16B.10.000009
ORF1ab/nsp12451S451SagCagT55AY.1190.000177
ORF1ab/nsp12451S451SagCagT55AY.420.000201
ORF1ab/nsp12451S451SagCagT55AY.60.000206
ORF1ab/nsp12451S451NaGcaAc55B.1.1.3180.001509
ORF1ab/nsp12451S451SagCagT55B.1.1.3480.003981
ORF1ab/nsp12451S451SagCagT55B.1.177.50.006211
ORF1ab/nsp12451S451NaGcaAc55B.1.3510.000149
ORF1ab/nsp12451S451SagCagT55B.1.36.290.002587
ORF1ab/nsp12451S451SagCagT55B.1.6210.000443
ORF1ab/nsp12451S451IaGcaTc55B.1.6210.000443
ORF1ab/nsp12451S451SagCagT55C.10.011962
ORF1ab/nsp12451S451SagCagT55Q.30.000725
ORF1ab/nsp12451S451SagCagT44A.290.021277
ORF1ab/nsp12451S451TaGcaCc34All0.000001
ORF1ab/nsp12451S451TaGCaCT14All0
ORF1ab/nsp12451S451CAgcTgc44AY.1030.000025
ORF1ab/nsp12451S451SagCagT44AY.120.2.10.001993
ORF1ab/nsp12451S451SagCagT44AY.200.000155
ORF1ab/nsp12451S451SagCagT44AY.30.00004
ORF1ab/nsp12451S451NaGcaAc44AY.40.000006
ORF1ab/nsp12451S451SagCagT44AY.650.002132
ORF1ab/nsp12451S451delAGC---44B.1.1770.000053
ORF1ab/nsp12451S451IaGcaTc44B.1.1770.000053
ORF1ab/nsp12451S451RAgcCgc44B.1.351.50.002398
ORF1ab/nsp12451S451SagCagT44P.1.10.001271
ORF1ab/nsp12451S451RAgcCgc23AY.250.000012
ORF1ab/nsp12451S451RagCagA13AY.250.000006
ORF1ab/nsp12451S451NaGcaAc33AY.30.00003
ORF1ab/nsp12451S451IaGcaTc33AY.30.00003
ORF1ab/nsp12451S451IaGcaTc33AY.3.10.000256
ORF1ab/nsp12451S451delAGC---33AY.40.000005
ORF1ab/nsp12451S451SagCagT33AY.550.002752
ORF1ab/nsp12451S451RagCagA33B.1.1.4860.004732
ORF1ab/nsp12451S451SagCagT33B.1.1110.003525
ORF1ab/nsp12451S451SagCagT33B.1.177.810.000568
ORF1ab/nsp12451S451del2aGCa--33B.1.177.820.001432
ORF1ab/nsp12451S451SagCagT33B.1.2390.003663
ORF1ab/nsp12451S451SagCagT33B.1.3110.000824
ORF1ab/nsp12451S451del2aGCa--33B.1.3510.000089
ORF1ab/nsp12451S451NaGcaAc33B.1.4270.000151
ORF1ab/nsp12451S451delAGC---33B.1.617.20.000011
ORF1ab/nsp12451S451GAgcGgc22A0.000774
ORF1ab/nsp12451S451GAgcGgc22A.23.10.001408
ORF1ab/nsp12451S451SagCagT22AE.80.000978
ORF1ab/nsp12451S451CAgcTgc22AY.1020.000053
ORF1ab/nsp12451S451SagCagT22AY.1170.000169
ORF1ab/nsp12451S451GAgcGgc22AY.250.000012
ORF1ab/nsp12451S451GAgcGgc22AY.290.000032
ORF1ab/nsp12451S451RagCagA22AY.340.000194
ORF1ab/nsp12451S451delAGC---22AY.4.50.000215
ORF1ab/nsp12451S451SagCagT22AY.50.000041
ORF1ab/nsp12451S451SagCagT22AY.5.30.000675
ORF1ab/nsp12451S451del2aGCa--22AY.520.001629
ORF1ab/nsp12451S451RagCagG22AY.660.002139
ORF1ab/nsp12451S451SagCagT22AY.850.000854
ORF1ab/nsp12451S451IaGcaTc22B.1.10.000036
ORF1ab/nsp12451S451SagCagT22B.1.1.2140.000111
ORF1ab/nsp12451S451SagCagT22B.1.1.330.000842
ORF1ab/nsp12451S451SagCagT22B.1.1.5190.000079
ORF1ab/nsp12451S451SagCagT22B.1.1600.000062
ORF1ab/nsp12451S451del2aGCa--22B.1.1600.000062
ORF1ab/nsp12451S451SagCagT22B.1.177.870.001456
ORF1ab/nsp12451S451RagCagA12B.1.20.000009
ORF1ab/nsp12451S451RagCagG12B.1.20.000009
ORF1ab/nsp12451S451CAgcTgc22B.1.2060.001631
ORF1ab/nsp12451S451IaGcaTc22B.1.2210.000142
ORF1ab/nsp12451S451SagCagT22B.1.360.000292
ORF1ab/nsp12451S451SagCagT22B.1.36.180.00084
ORF1ab/nsp12451S451GAgcGgc22B.1.4290.000047
ORF1ab/nsp12451S451SagCagT22B.1.4330.00639
ORF1ab/nsp12451S451NaGcaAc22B.1.5260.000047
ORF1ab/nsp12451S451SagCagT22B.1.617.10.000258
ORF1ab/nsp12451S451NaGcaAc22B.1.617.20.000008
ORF1ab/nsp12451S451RAgcCgc22B.1.617.20.000008
ORF1ab/nsp12451S451SagCagT22P.1.140.000096
ORF1ab/nsp12451S451SagCagT22P.1.150.000465
ORF1ab/nsp12451S451SagCagT22P.20.000373
ORF1ab/nsp12451S451NaGcaAc110.055556
ORF1ab/nsp12451S451SagCagT11A.10.000282
ORF1ab/nsp12451S451SagCagT11AD.20.000219
ORF1ab/nsp12451S451WAgCTgG11All0
ORF1ab/nsp12451S451KaGCaAA11All0
ORF1ab/nsp12451S451IaGcaTc11AY.1020.000027
ORF1ab/nsp12451S451RagCagA11AY.1020.000027
ORF1ab/nsp12451S451NaGcaAc11AY.1030.000006
ORF1ab/nsp12451S451IaGcaTc11AY.1030.000006
ORF1ab/nsp12451S451RagCagA11AY.1030.000006
ORF1ab/nsp12451S451SagCagT11AY.1090.00074
ORF1ab/nsp12451S451SagCagT11AY.1100.000113
ORF1ab/nsp12451S451SagCagT11AY.1110.000183
ORF1ab/nsp12451S451SagCagT11AY.1130.000142
ORF1ab/nsp12451S451SagCagT11AY.1160.000287
ORF1ab/nsp12451S451RAgcCgc11AY.1190.000035
ORF1ab/nsp12451S451SagCagT11AY.1200.000037
ORF1ab/nsp12451S451SagCagT11AY.16.10.00047
ORF1ab/nsp12451S451GAgcGgc11AY.200.000039
ORF1ab/nsp12451S451SagCagT11AY.230.00007
ORF1ab/nsp12451S451NaGcaAc11AY.250.000006
ORF1ab/nsp12451S451CAgcTgc11AY.250.000006
ORF1ab/nsp12451S451GAgcGgc11AY.260.000028
ORF1ab/nsp12451S451SagCagT11AY.270.000065
ORF1ab/nsp12451S451TaGCaCT11AY.30.00001
ORF1ab/nsp12451S451GAgcGgc11AY.30.00001
ORF1ab/nsp12451S451SagCagT11AY.300.000396
ORF1ab/nsp12451S451NaGcaAc11AY.300.000396
ORF1ab/nsp12451S451SagCagT11AY.330.000067
ORF1ab/nsp12451S451CAgcTgc11AY.330.000067
ORF1ab/nsp12451S451delAGC---11AY.360.000148
ORF1ab/nsp12451S451NaGcaAc11AY.390.000025
ORF1ab/nsp12451S451TaGcaCc11AY.39.10.00004
ORF1ab/nsp12451S451SagCagT11AY.39.10.00004
ORF1ab/nsp12451S451CAgcTgc11AY.40.000002
ORF1ab/nsp12451S451GAgcGgc11AY.4.20.000022
ORF1ab/nsp12451S451delAGC---11AY.430.000004
ORF1ab/nsp12451S451CAgcTgc11AY.430.000004
ORF1ab/nsp12451S451NaGcaAc11AY.430.000004
ORF1ab/nsp12451S451TaGcaCc11AY.440.000006
ORF1ab/nsp12451S451SagCagT11AY.450.000122
ORF1ab/nsp12451S451SagCagT11AY.460.000104
ORF1ab/nsp12451S451NaGcaAc11AY.470.000031
ORF1ab/nsp12451S451RagCagA11AY.470.000031
ORF1ab/nsp12451S451delAGC---11AY.520.000814
ORF1ab/nsp12451S451SagCagT11AY.530.000288
ORF1ab/nsp12451S451SagCagT11AY.540.000095
ORF1ab/nsp12451S451SagCagT11AY.590.00053
ORF1ab/nsp12451S451IaGcaTc11AY.60.000041
ORF1ab/nsp12451S451SagCagT11AY.680.000274
ORF1ab/nsp12451S451SagCagT11AY.750.000056
ORF1ab/nsp12451S451IaGcaTc11AY.750.000056
ORF1ab/nsp12451S451WAgCTgG11AY.850.000427
ORF1ab/nsp12451S451GAgcGgc11AY.90.000068
ORF1ab/nsp12451S451SagCagT11AY.98.10.000048
ORF1ab/nsp12451S451IaGcaTc11AY.98.10.000048
ORF1ab/nsp12451S451delAGC---11B.10.000009
ORF1ab/nsp12451S451del1agCag-11B.10.000009
ORF1ab/nsp12451S451delAGC---11B.1.10.000018
ORF1ab/nsp12451S451CAgcTgc11B.1.10.000018
ORF1ab/nsp12451S451GAgcGgc11B.1.10.000018
ORF1ab/nsp12451S451TaGcaCc11B.1.10.000018
ORF1ab/nsp12451S451delAGC---11B.1.1.1390.022727
ORF1ab/nsp12451S451SagCagT11B.1.1.1810.004545
ORF1ab/nsp12451S451SagCagT11B.1.1.2200.001859
ORF1ab/nsp12451S451delAGC---11B.1.1.2360.006897
ORF1ab/nsp12451S451SagCagT11B.1.1.2410.00207
ORF1ab/nsp12451S451SagCagT11B.1.1.2430.004082
ORF1ab/nsp12451S451SagCagT11B.1.1.2690.001353
ORF1ab/nsp12451S451SagCagT11B.1.1.2890.002083
ORF1ab/nsp12451S451delAGC---11B.1.1.3060.000438
ORF1ab/nsp12451S451delAGC---11B.1.1.3110.000358
ORF1ab/nsp12451S451IaGcaTc11B.1.1.3150.008475
ORF1ab/nsp12451S451SagCagT11B.1.1.3160.000925
ORF1ab/nsp12451S451SagCagT11B.1.1.3170.000412
ORF1ab/nsp12451S451IaGcaTc11B.1.1.3690.000446
ORF1ab/nsp12451S451SagCagT11B.1.1.3720.000689
ORF1ab/nsp12451S451IaGcaTc11B.1.1.5190.00004
ORF1ab/nsp12451S451NaGcaAc11B.1.130.002375
ORF1ab/nsp12451S451SagCagT11B.1.1570.002985
ORF1ab/nsp12451S451NaGcaAc11B.1.1600.000031
ORF1ab/nsp12451S451NaGcaAc11B.1.160.220.006757
ORF1ab/nsp12451S451delAGC---11B.1.160.230.004831
ORF1ab/nsp12451S451KaGCaAA11B.1.1770.000013
ORF1ab/nsp12451S451delAGC---11B.1.177.180.00116
ORF1ab/nsp12451S451SagCagT11B.1.177.240.001295
ORF1ab/nsp12451S451delAGC---11B.1.177.40.000211
ORF1ab/nsp12451S451SagCagT11B.1.177.440.000519
ORF1ab/nsp12451S451delAGC---11B.1.177.510.004566
ORF1ab/nsp12451S451delAGC---11B.1.177.540.000606
ORF1ab/nsp12451S451SagCagT11B.1.177.570.000281
ORF1ab/nsp12451S451del2aGCa--11B.1.177.60.000977
ORF1ab/nsp12451S451SagCagT11B.1.177.820.000477
ORF1ab/nsp12451S451IaGcaTc11B.1.20.000009
ORF1ab/nsp12451S451NaGcaAc11B.1.20.000009
ORF1ab/nsp12451S451SagCagT11B.1.2100.002132
ORF1ab/nsp12451S451NaGcaAc11B.1.2340.000132
ORF1ab/nsp12451S451GAgcGgc11B.1.2430.00007
ORF1ab/nsp12451S451RagCagA11B.1.2580.000067
ORF1ab/nsp12451S451SagCagT11B.1.258.160.001637
ORF1ab/nsp12451S451SagCagT11B.1.258.170.000104
ORF1ab/nsp12451S451RagCagA11B.1.2650.001271
ORF1ab/nsp12451S451RagCagA11B.1.3200.001245
ORF1ab/nsp12451S451CAgcTgc11B.1.3510.00003
ORF1ab/nsp12451S451SagCagT11B.1.351.50.0006
ORF1ab/nsp12451S451NaGcaAc11B.1.360.000146
ORF1ab/nsp12451S451del2aGCa--11B.1.36.10.00114
ORF1ab/nsp12451S451delAGC---11B.1.36.170.000494
ORF1ab/nsp12451S451SagCagT11B.1.3670.000792
ORF1ab/nsp12451S451IaGcaTc11B.1.3910.001127
ORF1ab/nsp12451S451CAgcTgc11B.1.4270.00005
ORF1ab/nsp12451S451SagCagT11B.1.438.10.000107
ORF1ab/nsp12451S451NaGcaAc11B.1.5090.000866
ORF1ab/nsp12451S451SagCagT11B.1.5230.002451
ORF1ab/nsp12451S451del1Agc-gc11B.1.5250.000113
ORF1ab/nsp12451S451SagCagT11B.1.5610.000397
ORF1ab/nsp12451S451SagCagT11B.1.5700.002941
ORF1ab/nsp12451S451IaGcaTc11B.1.5800.004065
ORF1ab/nsp12451S451RAgcCgc11B.1.5820.000491
ORF1ab/nsp12451S451SagCagT11B.1.5870.001898
ORF1ab/nsp12451S451RagCagA11B.1.5880.00091
ORF1ab/nsp12451S451NaGcaAc11B.1.5950.000261
ORF1ab/nsp12451S451RagCagA11B.1.5960.000087
ORF1ab/nsp12451S451GAgcGgc11B.1.6000.005848
ORF1ab/nsp12451S451CAgcTgc11B.1.6060.006024
ORF1ab/nsp12451S451SagCagT11B.1.6230.000536
ORF1ab/nsp12451S451SagCagT11B.1.9.50.005682
ORF1ab/nsp12451S451SagCagT11C.1.10.076923
ORF1ab/nsp12451S451SagCagT11C.360.000911
ORF1ab/nsp12451S451IaGcaTc11C.36.30.000567
ORF1ab/nsp12451S451RAgcCgc11C.370.000116
ORF1ab/nsp12451S451NaGcaAc11C.370.000116
ORF1ab/nsp12451S451IaGcaTc11C.370.000116
ORF1ab/nsp12451S451SagCagT11C.370.000116
ORF1ab/nsp12451S451IaGcaTc11D.20.000075
ORF1ab/nsp12451S451RAgcCgc11P.10.000016
ORF1ab/nsp12451S451NaGcaAc11P.1.140.000048
ORF1ab/nsp12451S451RagCagA11P.1.140.000048
ORF1ab/nsp12451S451RagCagA11Q.10.000126
ORF1ab/nsp12451S451NaGcaAc11Q.10.000126
ORF1ab/nsp12451S451del2aGCa--11R.10.00009