CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 45

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1245F45FF4437FsynttTttC327327113573-13575
ORF1ab/nsp1245F45delF4437deldelTTT---4343113573-13575
ORF1ab/nsp1245F45LF4437LnonsynTttCtt1180.72727313573-13575
ORF1ab/nsp1245F45LF4437LnonsynttTttA1130.27272713573-13575
ORF1ab/nsp1245F45SF4437SnonsyntTttCt66113573-13575
ORF1ab/nsp1245F45CF4437CnonsyntTttGt650.83333313573-13575
ORF1ab/nsp1245F45CF4437CnonsyntTTtGC610.16666713573-13575
ORF1ab/nsp1245F45VF4437VnonsynTttGtt55113573-13575
ORF1ab/nsp1245F45GF4437GnonsynTTTGGC22113573-13575
ORF1ab/nsp1245F45del1F4437del1delTtt-tt210.513573-13575
ORF1ab/nsp1245F45del2F4437del2delTTt--t210.513573-13575
ORF1ab/nsp1245F45del1F4437del1delTtTCt-210.513573-13575
ORF1ab/nsp1245F45del2F4437del2deltTTt--210.513573-13575
ORF1ab/nsp1245F45IF4437InonsynTttAtt11113573-13575
ORF1ab/nsp1245F45NF4437NnonsynTTtAAt11113573-13575

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1245F45FttTttC327327All0.000063
ORF1ab/nsp1245F45FttTttC154154AY.750.008627
ORF1ab/nsp1245F45FttTttC4949B.1.6210.004337
ORF1ab/nsp1245F45delTTT---4343All0.000008
ORF1ab/nsp1245F45FttTttC2121B.10.000192
ORF1ab/nsp1245F45FttTttC1515B.1.1.70.000013
ORF1ab/nsp1245F45FttTttC1313B.1.1.3500.52
ORF1ab/nsp1245F45LTttCtt811All0.000002
ORF1ab/nsp1245F45LttTttA311All0.000001
ORF1ab/nsp1245F45FttTttC1111AY.440.000067
ORF1ab/nsp1245F45delTTT---1010B.1.1.70.000009
ORF1ab/nsp1245F45StTttCt66All0.000001
ORF1ab/nsp1245F45CtTttGt56All0.000001
ORF1ab/nsp1245F45CtTTtGC16All0
ORF1ab/nsp1245F45FttTttC66AY.420.000241
ORF1ab/nsp1245F45FttTttC66B.1.617.20.000023
ORF1ab/nsp1245F45VTttGtt55All0.000001
ORF1ab/nsp1245F45FttTttC55B.1.1.2220.00102
ORF1ab/nsp1245F45FttTttC44AY.40.000006
ORF1ab/nsp1245F45FttTttC44AY.450.000487
ORF1ab/nsp1245F45FttTttC44B.1.20.000035
ORF1ab/nsp1245F45FttTttC33AY.1020.00008
ORF1ab/nsp1245F45delTTT---33AY.430.000013
ORF1ab/nsp1245F45CtTttGt33B.1.1.70.000003
ORF1ab/nsp1245F45FttTttC33B.1.6370.000219
ORF1ab/nsp1245F45GTTTGGC22All0
ORF1ab/nsp1245F45del1TtTCt-12All0
ORF1ab/nsp1245F45del1Ttt-tt12All0
ORF1ab/nsp1245F45del2TTt--t12All0
ORF1ab/nsp1245F45del2tTTt--12All0
ORF1ab/nsp1245F45FttTttC22AY.1030.000012
ORF1ab/nsp1245F45FttTttC22AY.1180.000125
ORF1ab/nsp1245F45FttTttC22AY.250.000012
ORF1ab/nsp1245F45delTTT---22AY.250.000012
ORF1ab/nsp1245F45FttTttC22AY.330.000134
ORF1ab/nsp1245F45delTTT---22AY.40.000003
ORF1ab/nsp1245F45StTttCt22B.10.000018
ORF1ab/nsp1245F45LttTttA12B.1.1.70.000001
ORF1ab/nsp1245F45LTttCtt12B.1.1.70.000001
ORF1ab/nsp1245F45FttTttC22B.1.1770.000026
ORF1ab/nsp1245F45FttTttC22B.1.3510.000059
ORF1ab/nsp1245F45GTTTGGC22B.1.3510.000059
ORF1ab/nsp1245F45FttTttC22B.1.5260.000047
ORF1ab/nsp1245F45FttTttC22B.1.5670.006667
ORF1ab/nsp1245F45delTTT---22P.10.000032
ORF1ab/nsp1245F45delTTT---22P.1.150.000465
ORF1ab/nsp1245F45VTttGtt11A.280.002646
ORF1ab/nsp1245F45ITttAtt11All0
ORF1ab/nsp1245F45NTTtAAt11All0
ORF1ab/nsp1245F45FttTttC11AY.1000.000046
ORF1ab/nsp1245F45VTttGtt11AY.1030.000006
ORF1ab/nsp1245F45FttTttC11AY.1130.000142
ORF1ab/nsp1245F45delTTT---11AY.1190.000035
ORF1ab/nsp1245F45delTTT---11AY.1200.000037
ORF1ab/nsp1245F45StTttCt11AY.130.000161
ORF1ab/nsp1245F45CtTTtGC11AY.330.000067
ORF1ab/nsp1245F45delTTT---11AY.34.10.00051
ORF1ab/nsp1245F45CtTttGt11AY.40.000002
ORF1ab/nsp1245F45FttTttC11AY.4.20.000022
ORF1ab/nsp1245F45VTttGtt11AY.4.2.10.000149
ORF1ab/nsp1245F45del2tTTt--11AY.4.50.000107
ORF1ab/nsp1245F45delTTT---11AY.4.50.000107
ORF1ab/nsp1245F45FttTttC11AY.430.000004
ORF1ab/nsp1245F45delTTT---11AY.60.000041
ORF1ab/nsp1245F45delTTT---11AY.660.00107
ORF1ab/nsp1245F45LTttCtt11AY.750.000056
ORF1ab/nsp1245F45del1TtTCt-11AY.9.20.000037
ORF1ab/nsp1245F45delTTT---11AY.98.10.000048
ORF1ab/nsp1245F45LttTttA11AY.98.10.000048
ORF1ab/nsp1245F45delTTT---11AY.990.001049
ORF1ab/nsp1245F45del2TTt--t11AY.990.001049
ORF1ab/nsp1245F45FttTttC11AY.99.20.000092
ORF1ab/nsp1245F45ITttAtt11B0.000128
ORF1ab/nsp1245F45LttTttA11B.10.000009
ORF1ab/nsp1245F45NTTtAAt11B.10.000009
ORF1ab/nsp1245F45VTttGtt11B.10.000009
ORF1ab/nsp1245F45FttTttC11B.1.10.000018
ORF1ab/nsp1245F45delTTT---11B.1.10.000018
ORF1ab/nsp1245F45LTttCtt11B.1.10.000018
ORF1ab/nsp1245F45delTTT---11B.1.1.10.000327
ORF1ab/nsp1245F45delTTT---11B.1.1.1390.022727
ORF1ab/nsp1245F45StTttCt11B.1.1.3110.000358
ORF1ab/nsp1245F45delTTT---11B.1.1.3480.000796
ORF1ab/nsp1245F45delTTT---11B.1.1.370.000193
ORF1ab/nsp1245F45LTttCtt11B.1.1.4020.011111
ORF1ab/nsp1245F45FttTttC11B.1.1.4090.002833
ORF1ab/nsp1245F45FttTttC11B.1.177.210.000076
ORF1ab/nsp1245F45StTttCt11B.1.177.580.001332
ORF1ab/nsp1245F45FttTttC11B.1.177.650.000665
ORF1ab/nsp1245F45FttTttC11B.1.177.870.000728
ORF1ab/nsp1245F45LTttCtt11B.1.20.000009
ORF1ab/nsp1245F45delTTT---11B.1.20.000009
ORF1ab/nsp1245F45FttTttC11B.1.214.10.02
ORF1ab/nsp1245F45FttTttC11B.1.2430.00007
ORF1ab/nsp1245F45delTTT---11B.1.3110.000275
ORF1ab/nsp1245F45CtTttGt11B.1.3510.00003
ORF1ab/nsp1245F45LTttCtt11B.1.36.170.000494
ORF1ab/nsp1245F45delTTT---11B.1.36.180.00042
ORF1ab/nsp1245F45VTttGtt11B.1.3690.000285
ORF1ab/nsp1245F45LTttCtt11B.1.4620.007246
ORF1ab/nsp1245F45LTttCtt11B.1.5250.000113
ORF1ab/nsp1245F45StTttCt11B.1.5800.004065
ORF1ab/nsp1245F45delTTT---11B.1.617.20.000004
ORF1ab/nsp1245F45del1Ttt-tt11B.1.617.20.000004
ORF1ab/nsp1245F45delTTT---11B.1.621.10.000506
ORF1ab/nsp1245F45delTTT---11C.170.055556
ORF1ab/nsp1245F45delTTT---11C.370.000116
ORF1ab/nsp1245F45FttTttC11P.10.000016
ORF1ab/nsp1245F45delTTT---11P.20.000187
ORF1ab/nsp1245F45delTTT---11Q.10.000126