CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp12 | 443 | A443S | A4835S | nonsyn | Gct | Tct | 2446 | 2445 | 0.999591 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443S | A4835S | nonsyn | GcT | TcG | 2446 | 1 | 0.000408831 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443V | A4835V | nonsyn | gCt | gTt | 1376 | 1376 | 1 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443A | A4835A | syn | gcT | gcC | 837 | 588 | 0.702509 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443A | A4835A | syn | gcT | gcG | 837 | 220 | 0.262843 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443A | A4835A | syn | gcT | gcA | 837 | 29 | 0.0346476 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443T | A4835T | nonsyn | Gct | Act | 347 | 346 | 0.997118 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443T | A4835T | nonsyn | GcT | AcA | 347 | 1 | 0.00288184 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443del | A4835del | del | GCT | --- | 52 | 52 | 1 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443P | A4835P | nonsyn | Gct | Cct | 8 | 8 | 1 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443D | A4835D | nonsyn | gCt | gAt | 3 | 3 | 1 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443del1 | A4835del1 | del | gcT | gc- | 3 | 2 | 0.666667 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443G | A4835G | nonsyn | gCt | gGt | 3 | 2 | 0.666667 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443G | A4835G | nonsyn | gCT | gGG | 3 | 1 | 0.333333 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443del1 | A4835del1 | del | Gct | -ct | 3 | 1 | 0.333333 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443N | A4835N | nonsyn | GCT | AAC | 1 | 1 | 1 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443del2 | A4835del2 | del | gCT | g-- | 1 | 1 | 1 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443W | A4835W | nonsyn | GCT | TGG | 1 | 1 | 1 | 14767-14769 |
ORF1ab/nsp12 | 443 | A443C | A4835C | nonsyn | GCt | TGt | 1 | 1 | 1 | 14767-14769 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2445 | 2446 | All | 0.000468 |
ORF1ab/nsp12 | 443 | A443S | GcT | TcG | 1 | 2446 | All | 0 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1886 | 1886 | B.1.1.176 | 0.828647 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1376 | 1376 | All | 0.000263 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 588 | 837 | All | 0.000112 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 220 | 837 | All | 0.000042 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 29 | 837 | All | 0.000006 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 346 | 347 | All | 0.000066 |
ORF1ab/nsp12 | 443 | A443T | GcT | AcA | 1 | 347 | All | 0 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 319 | 319 | AY.10 | 0.169051 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 241 | 241 | B.1.1.7 | 0.000216 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 217 | 217 | B.1.1.7 | 0.000194 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 139 | 171 | B.1.1.7 | 0.000124 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 21 | 171 | B.1.1.7 | 0.000019 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 11 | 171 | B.1.1.7 | 0.00001 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 155 | 156 | AY.4 | 0.000241 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 156 | AY.4 | 0.000002 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 155 | 155 | B.1.177 | 0.002041 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 149 | 149 | P.1.12 | 0.07212 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 117 | 117 | B.1.1.291 | 0.08686 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 113 | 113 | B.1.621 | 0.010003 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 106 | 106 | AY.4 | 0.000165 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 75 | 75 | B.1.617.2 | 0.000282 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 70 | 70 | B.1.595 | 0.018267 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 63 | 67 | B.1.617.2 | 0.000237 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 2 | 67 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 2 | 67 | B.1.617.2 | 0.000008 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 61 | 61 | B.1 | 0.000559 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 52 | 52 | All | 0.00001 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 44 | 44 | B.1.561 | 0.017467 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 37 | 41 | AY.3 | 0.000368 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 3 | 41 | AY.3 | 0.00003 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 41 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 38 | 38 | AY.44 | 0.000231 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 36 | 37 | AY.25 | 0.000217 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 37 | AY.25 | 0.000006 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 33 | 33 | B.1.240.2 | 1 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 32 | 32 | B.1.2 | 0.000282 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 26 | 26 | B.1.623 | 0.013948 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 24 | 24 | B.1.177 | 0.000316 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 23 | 23 | D.2 | 0.001726 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 22 | 22 | AJ.1 | 1 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 21 | 21 | AD.1 | 0.08642 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 20 | 20 | B.1.258 | 0.001331 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 18 | 18 | B.1.1 | 0.000327 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 15 | 15 | AY.41 | 0.004409 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 14 | 14 | AY.98.1 | 0.000678 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 13 | 13 | AY.7.1 | 0.001465 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 13 | 13 | B.1.177.44 | 0.006746 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 11 | 11 | B.1.258.14 | 0.010784 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 5 | 10 | B.1 | 0.000046 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 5 | 10 | B.1 | 0.000046 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 8 | 10 | B.1.2 | 0.00007 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 2 | 10 | B.1.2 | 0.000018 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 8 | 8 | A.2.5 | 0.003992 |
ORF1ab/nsp12 | 443 | A443P | Gct | Cct | 8 | 8 | All | 0.000002 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 8 | 8 | B.1.1.318 | 0.002414 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 8 | 8 | B.1.587 | 0.01518 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 7 | 7 | AS.1 | 0.066667 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 7 | 7 | B.1.1.39 | 0.003568 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 7 | 7 | B.1.409 | 0.005469 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 7 | 7 | B.1.470 | 0.009831 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 3 | 6 | AY.102 | 0.00008 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 3 | 6 | AY.102 | 0.00008 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 6 | 6 | AY.86 | 0.004979 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 3 | 5 | AY.43 | 0.000013 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 2 | 5 | AY.43 | 0.000009 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 5 | 5 | B.1.1.311 | 0.001791 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 5 | 5 | B.1.1.359 | 0.138889 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 5 | 5 | B.1.258.11 | 0.001982 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp12 | 443 | A443D | gCt | gAt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp12 | 443 | A443del1 | gcT | gc- | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 443 | A443G | gCt | gGt | 2 | 3 | All | 0 |
ORF1ab/nsp12 | 443 | A443del1 | Gct | -ct | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 443 | A443G | gCT | gGG | 1 | 3 | All | 0 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 2 | 3 | AY.33 | 0.000134 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 3 | AY.33 | 0.000067 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 3 | 3 | B.1.1.429 | 0.013825 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp12 | 443 | A443G | gCt | gGt | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 443 | A443S | GcT | TcG | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 443 | A443G | gCT | gGG | 1 | 2 | 0.055556 | |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 2 | 2 | B | 0.000256 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2 | 2 | B.1.1.101 | 0.02 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.1.303 | 0.005525 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.250 | 0.028986 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 2 | 2 | B.1.36.9 | 0.006431 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp12 | 443 | A443W | GCT | TGG | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 443 | A443C | GCt | TGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 1 | 0.055556 | |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AE.5 | 0.018519 |
ORF1ab/nsp12 | 443 | A443N | GCT | AAC | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 443 | A443del2 | gCT | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 443 | A443W | GCT | TGG | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 443 | A443C | GCt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp12 | 443 | A443P | Gct | Cct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp12 | 443 | A443P | Gct | Cct | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 443 | A443T | GcT | AcA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp12 | 443 | A443D | gCt | gAt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp12 | 443 | A443D | gCt | gAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp12 | 443 | A443G | gCt | gGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 443 | A443P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 443 | A443D | gCt | gAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp12 | 443 | A443del2 | gCT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 443 | A443del1 | gcT | gc- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 443 | A443P | Gct | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp12 | 443 | A443N | GCT | AAC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 443 | A443P | Gct | Cct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp12 | 443 | A443del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp12 | 443 | A443P | Gct | Cct | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp12 | 443 | A443del1 | gcT | gc- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 1 | B.1.370 | 0.008 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp12 | 443 | A443T | Gct | Act | 1 | 1 | B.1.406 | 0.006061 |
ORF1ab/nsp12 | 443 | A443P | Gct | Cct | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 1 | B.1.446 | 0.02 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp12 | 443 | A443del1 | Gct | -ct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 1 | 1 | B.1.604 | 0.017241 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 1 | 1 | B.1.607 | 0.052632 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp12 | 443 | A443P | Gct | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcA | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 443 | A443S | Gct | Tct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 443 | A443A | gcT | gcC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp12 | 443 | A443V | gCt | gTt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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