CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 436

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12436E436EE4828EsyngaAgaG34253425114746-14748
ORF1ab/nsp12436E436GE4828GnonsyngAagGa2542530.99606314746-14748
ORF1ab/nsp12436E436GE4828GnonsyngAAgGG25410.0039370114746-14748
ORF1ab/nsp12436E436DE4828DnonsyngaAgaC81560.69135814746-14748
ORF1ab/nsp12436E436DE4828DnonsyngaAgaT81250.30864214746-14748
ORF1ab/nsp12436E436AE4828AnonsyngAagCa7676114746-14748
ORF1ab/nsp12436E436KE4828KnonsynGaaAaa7575114746-14748
ORF1ab/nsp12436E436delE4828deldelGAA---6060114746-14748
ORF1ab/nsp12436E436VE4828VnonsyngAagTa22210.95454514746-14748
ORF1ab/nsp12436E436VE4828VnonsyngAAgTT2210.045454514746-14748
ORF1ab/nsp12436E436XE4828XnonsynGaaTaa1818114746-14748
ORF1ab/nsp12436E436QE4828QnonsynGaaCaa33114746-14748
ORF1ab/nsp12436E436del2E4828del2delgAAg--33114746-14748
ORF1ab/nsp12436E436del1E4828del1delgAag-a33114746-14748
ORF1ab/nsp12436E436LE4828LnonsynGAACTC210.514746-14748
ORF1ab/nsp12436E436LE4828LnonsynGAaTTa210.514746-14748
ORF1ab/nsp12436E436SE4828SnonsynGAaTCa11114746-14748
ORF1ab/nsp12436E436IE4828InonsynGAAATC11114746-14748

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12436E436EgaAgaG34253425All0.000655
ORF1ab/nsp12436E436EgaAgaG23922392AY.23.10.998331
ORF1ab/nsp12436E436EgaAgaG571571B.1.1.5190.022675
ORF1ab/nsp12436E436GgAagGa253254All0.000048
ORF1ab/nsp12436E436GgAAgGG1254All0
ORF1ab/nsp12436E436EgaAgaG8888AY.40.000137
ORF1ab/nsp12436E436GgAagGa8484B.1.4450.988235
ORF1ab/nsp12436E436DgaAgaC5681All0.000011
ORF1ab/nsp12436E436DgaAgaT2581All0.000005
ORF1ab/nsp12436E436AgAagCa7676All0.000015
ORF1ab/nsp12436E436KGaaAaa7575All0.000014
ORF1ab/nsp12436E436EgaAgaG7171B.1.1.70.000064
ORF1ab/nsp12436E436EgaAgaG6464AY.1170.005409
ORF1ab/nsp12436E436delGAA---6060All0.000011
ORF1ab/nsp12436E436KGaaAaa3737AY.40.000058
ORF1ab/nsp12436E436GgAagGa3333AY.1100.003719
ORF1ab/nsp12436E436GgAagGa3333B.10.000302
ORF1ab/nsp12436E436AgAagCa3030AY.440.000183
ORF1ab/nsp12436E436DgaAgaC2930B.1.1.70.000026
ORF1ab/nsp12436E436DgaAgaT130B.1.1.70.000001
ORF1ab/nsp12436E436EgaAgaG2929AY.230.002023
ORF1ab/nsp12436E436GgAagGa2929B.1.3081
ORF1ab/nsp12436E436delGAA---2828B.1.1.70.000025
ORF1ab/nsp12436E436EgaAgaG2525B.1.1770.000329
ORF1ab/nsp12436E436VgAagTa2122All0.000004
ORF1ab/nsp12436E436VgAAgTT122All0
ORF1ab/nsp12436E436EgaAgaG2222AY.30.000219
ORF1ab/nsp12436E436XGaaTaa1818All0.000003
ORF1ab/nsp12436E436EgaAgaG1616AY.250.000096
ORF1ab/nsp12436E436EgaAgaG1616B.1.5800.065041
ORF1ab/nsp12436E436EgaAgaG1515AY.430.000066
ORF1ab/nsp12436E436EgaAgaG1414AY.4.30.011785
ORF1ab/nsp12436E436EgaAgaG1414W.40.018919
ORF1ab/nsp12436E436KGaaAaa1212B.1.1.70.000011
ORF1ab/nsp12436E436DgaAgaT1111B.1.2210.000781
ORF1ab/nsp12436E436EgaAgaG1111B.1.617.20.000041
ORF1ab/nsp12436E436GgAagGa99AY.40.000014
ORF1ab/nsp12436E436AgAagCa99B.1.1.70.000008
ORF1ab/nsp12436E436GgAagGa99B.1.617.20.000034
ORF1ab/nsp12436E436GgAagGa88AY.1030.00005
ORF1ab/nsp12436E436AgAagCa88AY.40.000012
ORF1ab/nsp12436E436EgaAgaG88B.10.000073
ORF1ab/nsp12436E436EgaAgaG88B.1.6280.002819
ORF1ab/nsp12436E436EgaAgaG77B.1.4280.007143
ORF1ab/nsp12436E436AgAagCa66AY.430.000027
ORF1ab/nsp12436E436VgAagTa56B.1.1.70.000004
ORF1ab/nsp12436E436VgAAgTT16B.1.1.70.000001
ORF1ab/nsp12436E436GgAagGa55AY.430.000022
ORF1ab/nsp12436E436KGaaAaa55B.10.000046
ORF1ab/nsp12436E436DgaAgaC55B.1.617.20.000019
ORF1ab/nsp12436E436GgAagGa44AY.260.000113
ORF1ab/nsp12436E436AgAagCa44AY.420.000161
ORF1ab/nsp12436E436XGaaTaa44AY.430.000018
ORF1ab/nsp12436E436EgaAgaG44B.1.20.000035
ORF1ab/nsp12436E436VgAagTa44B.1.20.000035
ORF1ab/nsp12436E436AgAagCa44B.1.360.000584
ORF1ab/nsp12436E436AgAagCa44B.1.617.20.000015
ORF1ab/nsp12436E436delGAA---44B.1.617.20.000015
ORF1ab/nsp12436E436del1gAag-a33All0.000001
ORF1ab/nsp12436E436del2gAAg--33All0.000001
ORF1ab/nsp12436E436QGaaCaa33All0.000001
ORF1ab/nsp12436E436DgaAgaC33AY.1030.000019
ORF1ab/nsp12436E436GgAagGa33AY.230.000209
ORF1ab/nsp12436E436GgAagGa33AY.250.000018
ORF1ab/nsp12436E436GgAagGa33AY.30.00003
ORF1ab/nsp12436E436EgaAgaG33AY.340.000291
ORF1ab/nsp12436E436delGAA---33AY.40.000005
ORF1ab/nsp12436E436delGAA---33AY.4.50.000322
ORF1ab/nsp12436E436DgaAgaC33AY.5.40.00083
ORF1ab/nsp12436E436XGaaTaa33B.10.000027
ORF1ab/nsp12436E436DgaAgaT23B.10.000018
ORF1ab/nsp12436E436DgaAgaC13B.10.000009
ORF1ab/nsp12436E436EgaAgaG33B.1.10.000054
ORF1ab/nsp12436E436DgaAgaC33B.1.1600.000094
ORF1ab/nsp12436E436EgaAgaG33B.1.177.80.002257
ORF1ab/nsp12436E436LGAaTTa12All0
ORF1ab/nsp12436E436LGAACTC12All0
ORF1ab/nsp12436E436DgaAgaC22AY.1020.000053
ORF1ab/nsp12436E436EgaAgaG22AY.1030.000012
ORF1ab/nsp12436E436GgAagGa22AY.160.000759
ORF1ab/nsp12436E436EgaAgaG22AY.39.10.000079
ORF1ab/nsp12436E436del2gAAg--22AY.40.000003
ORF1ab/nsp12436E436AgAagCa22AY.4.50.000215
ORF1ab/nsp12436E436EgaAgaG22AY.440.000012
ORF1ab/nsp12436E436GgAagGa22AY.440.000012
ORF1ab/nsp12436E436EgaAgaG22AY.540.000191
ORF1ab/nsp12436E436EgaAgaG22AY.610.00021
ORF1ab/nsp12436E436DgaAgaC22AY.620.000871
ORF1ab/nsp12436E436AgAagCa22AY.750.000112
ORF1ab/nsp12436E436EgaAgaG22AY.980.000158
ORF1ab/nsp12436E436XGaaTaa22B0.000256
ORF1ab/nsp12436E436EgaAgaG22B.1.1.2200.003717
ORF1ab/nsp12436E436VgAagTa22B.1.1.3010.002358
ORF1ab/nsp12436E436GgAagGa22B.1.1.5190.000079
ORF1ab/nsp12436E436GgAagGa22B.1.1.70.000002
ORF1ab/nsp12436E436delGAA---22B.1.1770.000026
ORF1ab/nsp12436E436EgaAgaG22B.1.2430.000139
ORF1ab/nsp12436E436KGaaAaa22B.1.3510.000059
ORF1ab/nsp12436E436DgaAgaC22B.1.5580.009132
ORF1ab/nsp12436E436EgaAgaG22B.1.5600.009259
ORF1ab/nsp12436E436EgaAgaG22C.370.000232
ORF1ab/nsp12436E436KGaaAaa22D.20.00015
ORF1ab/nsp12436E436GgAagGa22P.10.000032
ORF1ab/nsp12436E436KGaaAaa22P.10.000032
ORF1ab/nsp12436E436GgAagGa110.055556
ORF1ab/nsp12436E436VgAagTa110.055556
ORF1ab/nsp12436E436XGaaTaa11A0.000387
ORF1ab/nsp12436E436GgAagGa11AE.80.000489
ORF1ab/nsp12436E436IGAAATC11All0
ORF1ab/nsp12436E436SGAaTCa11All0
ORF1ab/nsp12436E436GgAagGa11AY.1000.000046
ORF1ab/nsp12436E436EgaAgaG11AY.1000.000046
ORF1ab/nsp12436E436KGaaAaa11AY.1020.000027
ORF1ab/nsp12436E436EgaAgaG11AY.1020.000027
ORF1ab/nsp12436E436AgAagCa11AY.1020.000027
ORF1ab/nsp12436E436EgaAgaG11AY.1190.000035
ORF1ab/nsp12436E436DgaAgaC11AY.120.000316
ORF1ab/nsp12436E436KGaaAaa11AY.1200.000037
ORF1ab/nsp12436E436EgaAgaG11AY.160.00038
ORF1ab/nsp12436E436GgAAgGG11AY.23.10.000417
ORF1ab/nsp12436E436delGAA---11AY.250.000006
ORF1ab/nsp12436E436AgAagCa11AY.250.000006
ORF1ab/nsp12436E436EgaAgaG11AY.260.000028
ORF1ab/nsp12436E436AgAagCa11AY.290.000016
ORF1ab/nsp12436E436DgaAgaT11AY.30.00001
ORF1ab/nsp12436E436KGaaAaa11AY.340.000097
ORF1ab/nsp12436E436GgAagGa11AY.350.000233
ORF1ab/nsp12436E436EgaAgaG11AY.360.000148
ORF1ab/nsp12436E436GgAagGa11AY.370.000316
ORF1ab/nsp12436E436EgaAgaG11AY.390.000025
ORF1ab/nsp12436E436QGaaCaa11AY.40.000002
ORF1ab/nsp12436E436GgAagGa11AY.4.2.10.000149
ORF1ab/nsp12436E436DgaAgaT11AY.4.50.000107
ORF1ab/nsp12436E436GgAagGa11AY.4.50.000107
ORF1ab/nsp12436E436DgaAgaC11AY.410.000294
ORF1ab/nsp12436E436delGAA---11AY.430.000004
ORF1ab/nsp12436E436LGAACTC11AY.440.000006
ORF1ab/nsp12436E436KGaaAaa11AY.440.000006
ORF1ab/nsp12436E436DgaAgaT11AY.440.000006
ORF1ab/nsp12436E436XGaaTaa11AY.440.000006
ORF1ab/nsp12436E436GgAagGa11AY.450.000122
ORF1ab/nsp12436E436EgaAgaG11AY.46.30.000934
ORF1ab/nsp12436E436DgaAgaC11AY.50.000021
ORF1ab/nsp12436E436GgAagGa11AY.50.000021
ORF1ab/nsp12436E436XGaaTaa11AY.520.000814
ORF1ab/nsp12436E436DgaAgaC11AY.60.000041
ORF1ab/nsp12436E436DgaAgaT11AY.750.000056
ORF1ab/nsp12436E436delGAA---11AY.9.20.000037
ORF1ab/nsp12436E436delGAA---11AY.980.000079
ORF1ab/nsp12436E436delGAA---11B.10.000009
ORF1ab/nsp12436E436QGaaCaa11B.10.000009
ORF1ab/nsp12436E436XGaaTaa11B.1.10.000018
ORF1ab/nsp12436E436delGAA---11B.1.10.000018
ORF1ab/nsp12436E436delGAA---11B.1.1.1390.022727
ORF1ab/nsp12436E436GgAagGa11B.1.1.1760.000439
ORF1ab/nsp12436E436delGAA---11B.1.1.1920.002309
ORF1ab/nsp12436E436AgAagCa11B.1.1.2160.00089
ORF1ab/nsp12436E436EgaAgaG11B.1.1.2160.00089
ORF1ab/nsp12436E436KGaaAaa11B.1.1.250.000569
ORF1ab/nsp12436E436KGaaAaa11B.1.1.280.000311
ORF1ab/nsp12436E436DgaAgaT11B.1.1.2840.000107
ORF1ab/nsp12436E436GgAagGa11B.1.1.2940.001266
ORF1ab/nsp12436E436delGAA---11B.1.1.3060.000438
ORF1ab/nsp12436E436delGAA---11B.1.1.3110.000358
ORF1ab/nsp12436E436GgAagGa11B.1.1.3260.001761
ORF1ab/nsp12436E436delGAA---11B.1.1.460.004367
ORF1ab/nsp12436E436XGaaTaa11B.1.1.70.000001
ORF1ab/nsp12436E436QGaaCaa11B.1.1.70.000001
ORF1ab/nsp12436E436SGAaTCa11B.1.1.70.000001
ORF1ab/nsp12436E436EgaAgaG11B.1.1570.002985
ORF1ab/nsp12436E436delGAA---11B.1.160.230.004831
ORF1ab/nsp12436E436del1gAag-a11B.1.1770.000013
ORF1ab/nsp12436E436GgAagGa11B.1.1770.000013
ORF1ab/nsp12436E436VgAagTa11B.1.1770.000013
ORF1ab/nsp12436E436IGAAATC11B.1.1770.000013
ORF1ab/nsp12436E436delGAA---11B.1.177.160.000664
ORF1ab/nsp12436E436delGAA---11B.1.177.180.00116
ORF1ab/nsp12436E436DgaAgaT11B.1.177.230.003236
ORF1ab/nsp12436E436delGAA---11B.1.177.40.000211
ORF1ab/nsp12436E436delGAA---11B.1.177.510.004566
ORF1ab/nsp12436E436delGAA---11B.1.177.540.000606
ORF1ab/nsp12436E436VgAagTa11B.1.177.70.000165
ORF1ab/nsp12436E436del1gAag-a11B.1.177.730.000566
ORF1ab/nsp12436E436VgAagTa11B.1.177.860.000183
ORF1ab/nsp12436E436del1gAag-a11B.1.20.000009
ORF1ab/nsp12436E436GgAagGa11B.1.20.000009
ORF1ab/nsp12436E436DgaAgaT11B.1.20.000009
ORF1ab/nsp12436E436XGaaTaa11B.1.20.000009
ORF1ab/nsp12436E436LGAaTTa11B.1.2100.002132
ORF1ab/nsp12436E436KGaaAaa11B.1.2360.002053
ORF1ab/nsp12436E436DgaAgaT11B.1.2360.002053
ORF1ab/nsp12436E436EgaAgaG11B.1.2400.000216
ORF1ab/nsp12436E436VgAagTa11B.1.2430.00007
ORF1ab/nsp12436E436DgaAgaT11B.1.258.170.000104
ORF1ab/nsp12436E436KGaaAaa11B.1.258.70.001912
ORF1ab/nsp12436E436XGaaTaa11B.1.3010.005917
ORF1ab/nsp12436E436EgaAgaG11B.1.3110.000275
ORF1ab/nsp12436E436DgaAgaT11B.1.3510.00003
ORF1ab/nsp12436E436EgaAgaG11B.1.351.30.000876
ORF1ab/nsp12436E436GgAagGa11B.1.36.290.000517
ORF1ab/nsp12436E436KGaaAaa11B.1.4000.000429
ORF1ab/nsp12436E436AgAagCa11B.1.4450.011765
ORF1ab/nsp12436E436VgAagTa11B.1.466.20.000391
ORF1ab/nsp12436E436EgaAgaG11B.1.4700.001404
ORF1ab/nsp12436E436delGAA---11B.1.5250.000113
ORF1ab/nsp12436E436DgaAgaC11B.1.5250.000113
ORF1ab/nsp12436E436KGaaAaa11B.1.5250.000113
ORF1ab/nsp12436E436EgaAgaG11B.1.5260.000024
ORF1ab/nsp12436E436EgaAgaG11B.1.5300.007143
ORF1ab/nsp12436E436GgAagGa11B.1.5820.000491
ORF1ab/nsp12436E436EgaAgaG11B.1.5960.000087
ORF1ab/nsp12436E436KGaaAaa11B.1.5960.000087
ORF1ab/nsp12436E436KGaaAaa11B.1.617.10.000129
ORF1ab/nsp12436E436EgaAgaG11B.1.617.10.000129
ORF1ab/nsp12436E436KGaaAaa11B.1.617.20.000004
ORF1ab/nsp12436E436del2gAAg--11B.1.617.20.000004
ORF1ab/nsp12436E436VgAagTa11B.1.617.20.000004
ORF1ab/nsp12436E436XGaaTaa11B.1.617.20.000004
ORF1ab/nsp12436E436DgaAgaT11B.1.619.10.000641
ORF1ab/nsp12436E436XGaaTaa11B.1.6230.000536
ORF1ab/nsp12436E436delGAA---11B.1.6300.005236
ORF1ab/nsp12436E436GgAagGa11B.1.6310.003367
ORF1ab/nsp12436E436AgAagCa11B.1.6370.000073
ORF1ab/nsp12436E436KGaaAaa11B.1.6370.000073
ORF1ab/nsp12436E436DgaAgaC11B.4.40.018868
ORF1ab/nsp12436E436VgAagTa11B.400.000364
ORF1ab/nsp12436E436VgAagTa11B.610.005747
ORF1ab/nsp12436E436GgAagGa11C.36.30.000567
ORF1ab/nsp12436E436EgaAgaG11C.40.01
ORF1ab/nsp12436E436EgaAgaG11P.10.000016
ORF1ab/nsp12436E436VgAagTa11P.10.000016
ORF1ab/nsp12436E436GgAagGa11P.1.140.000048
ORF1ab/nsp12436E436EgaAgaG11P.1.140.000048
ORF1ab/nsp12436E436KGaaAaa11P.1.140.000048
ORF1ab/nsp12436E436delGAA---11Q.80.000165
ORF1ab/nsp12436E436AgAagCa11R.10.00009
ORF1ab/nsp12436E436GgAagGa11W.30.005263