CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 434

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12434S434SS4826SsyntcTtcC367536470.99238114740-14742
ORF1ab/nsp12434S434SS4826SsyntcTtcA3675170.0046258514740-14742
ORF1ab/nsp12434S434SS4826SsyntcTtcG3675110.002993214740-14742
ORF1ab/nsp12434S434FS4826FnonsyntCttTt130513040.99923414740-14742
ORF1ab/nsp12434S434FS4826FnonsyntCTtTC130510.00076628414740-14742
ORF1ab/nsp12434S434PS4826PnonsynTctCct273273114740-14742
ORF1ab/nsp12434S434YS4826YnonsyntCttAt266266114740-14742
ORF1ab/nsp12434S434AS4826AnonsynTctGct2372360.99578114740-14742
ORF1ab/nsp12434S434AS4826AnonsynTcTGcG23710.0042194114740-14742
ORF1ab/nsp12434S434delS4826deldelTCT---5656114740-14742
ORF1ab/nsp12434S434TS4826TnonsynTctAct15140.93333314740-14742
ORF1ab/nsp12434S434TS4826TnonsynTcTAcA1510.066666714740-14742
ORF1ab/nsp12434S434CS4826CnonsyntCttGt66114740-14742
ORF1ab/nsp12434S434del1S4826del1delTct-ct11114740-14742
ORF1ab/nsp12434S434RS4826RnonsynTCtCGt11114740-14742
ORF1ab/nsp12434S434del2S4826del2delTCt--t11114740-14742

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12434S434StcTtcC36473675All0.000698
ORF1ab/nsp12434S434StcTtcA173675All0.000003
ORF1ab/nsp12434S434StcTtcG113675All0.000002
ORF1ab/nsp12434S434StcTtcC33283328AY.40.00518
ORF1ab/nsp12434S434FtCttTt13041305All0.000249
ORF1ab/nsp12434S434FtCTtTC11305All0
ORF1ab/nsp12434S434FtCttTt399399B.1.1.70.000357
ORF1ab/nsp12434S434FtCttTt340340B.1.1420.985507
ORF1ab/nsp12434S434PTctCct273273All0.000052
ORF1ab/nsp12434S434YtCttAt266266All0.000051
ORF1ab/nsp12434S434ATctGct236237All0.000045
ORF1ab/nsp12434S434ATcTGcG1237All0
ORF1ab/nsp12434S434ATctGct197197AV.10.994949
ORF1ab/nsp12434S434StcTtcC163166B.1.1.70.000146
ORF1ab/nsp12434S434StcTtcG3166B.1.1.70.000003
ORF1ab/nsp12434S434YtCttAt164164AY.40.000255
ORF1ab/nsp12434S434FtCttTt7474B.1.1770.000974
ORF1ab/nsp12434S434PTctCct6161AY.430.00027
ORF1ab/nsp12434S434delTCT---5656All0.000011
ORF1ab/nsp12434S434FtCttTt5151B.1.617.20.000192
ORF1ab/nsp12434S434PTctCct4949AY.390.001211
ORF1ab/nsp12434S434StcTtcC4848B.1.617.20.000181
ORF1ab/nsp12434S434FtCttTt4545AY.40.00007
ORF1ab/nsp12434S434FtCttTt3737AZ.20.030378
ORF1ab/nsp12434S434FtCttTt3333AY.90.002231
ORF1ab/nsp12434S434YtCttAt3333B.1.1.70.00003
ORF1ab/nsp12434S434StcTtcC3131AY.910.022644
ORF1ab/nsp12434S434YtCttAt3131B.1.617.20.000117
ORF1ab/nsp12434S434FtCttTt3030AZ.10.026019
ORF1ab/nsp12434S434PTctCct3030B.1.617.20.000113
ORF1ab/nsp12434S434FtCttTt2929B.1.20.000255
ORF1ab/nsp12434S434delTCT---2626B.1.1.70.000023
ORF1ab/nsp12434S434FtCttTt2020B.10.000183
ORF1ab/nsp12434S434FtCttTt2020B.1.1.2770.015175
ORF1ab/nsp12434S434FtCttTt2020B.1.6210.00177
ORF1ab/nsp12434S434PTctCct1919AY.440.000116
ORF1ab/nsp12434S434StcTtcC1818AY.430.00008
ORF1ab/nsp12434S434PTctCct1818B.1.1.70.000016
ORF1ab/nsp12434S434FtCttTt1818B.1.6280.006342
ORF1ab/nsp12434S434FtCttTt1616AY.250.000096
ORF1ab/nsp12434S434TTctAct1415All0.000003
ORF1ab/nsp12434S434TTcTAcA115All0
ORF1ab/nsp12434S434FtCttTt1414AY.1020.000371
ORF1ab/nsp12434S434PTctCct1212B.1.2210.000852
ORF1ab/nsp12434S434PTctCct1111B.10.000101
ORF1ab/nsp12434S434FtCttTt1111B.1.4290.000259
ORF1ab/nsp12434S434FtCttTt99AY.440.000055
ORF1ab/nsp12434S434FtCttTt99B.1.10.000163
ORF1ab/nsp12434S434ATctGct99B.1.1.70.000008
ORF1ab/nsp12434S434FtCttTt99B.1.5260.000212
ORF1ab/nsp12434S434StcTtcA99B.1.930.008403
ORF1ab/nsp12434S434PTctCct88B.1.5230.019608
ORF1ab/nsp12434S434TTctAct77AY.40.000011
ORF1ab/nsp12434S434FtCttTt77AY.430.000031
ORF1ab/nsp12434S434CtCttGt66All0.000001
ORF1ab/nsp12434S434StcTtcC66AY.1200.000223
ORF1ab/nsp12434S434PTctCct66AY.250.000036
ORF1ab/nsp12434S434FtCttTt66AY.390.000148
ORF1ab/nsp12434S434StcTtcC66AY.39.10.000238
ORF1ab/nsp12434S434PTctCct66AY.40.000009
ORF1ab/nsp12434S434PTctCct66AY.750.000336
ORF1ab/nsp12434S434PTctCct66B.1.2580.000399
ORF1ab/nsp12434S434YtCttAt66B.1.258.170.000624
ORF1ab/nsp12434S434StcTtcA66P.10.000095
ORF1ab/nsp12434S434FtCttTt55AY.30.00005
ORF1ab/nsp12434S434ATctGct55AY.40.000008
ORF1ab/nsp12434S434ATctGct55AY.4.20.000108
ORF1ab/nsp12434S434FtCttTt55AY.450.000608
ORF1ab/nsp12434S434StcTtcG55B.1.2400.001078
ORF1ab/nsp12434S434FtCttTt55C.160.005302
ORF1ab/nsp12434S434ATctGct55P.10.000079
ORF1ab/nsp12434S434StcTtcC34AY.1030.000019
ORF1ab/nsp12434S434StcTtcA14AY.1030.000006
ORF1ab/nsp12434S434PTctCct44AY.260.000113
ORF1ab/nsp12434S434PTctCct44AY.30.00004
ORF1ab/nsp12434S434delTCT---44AY.4.50.00043
ORF1ab/nsp12434S434StcTtcC44AY.420.000161
ORF1ab/nsp12434S434FtCttTt44AY.50.000083
ORF1ab/nsp12434S434YtCttAt44B.1.1420.011594
ORF1ab/nsp12434S434StcTtcC44B.1.20.000035
ORF1ab/nsp12434S434FtCttTt44B.1.4590.016327
ORF1ab/nsp12434S434PTctCct33AY.1060.001005
ORF1ab/nsp12434S434FtCttTt33AY.1180.000188
ORF1ab/nsp12434S434StcTtcC23AY.30.00002
ORF1ab/nsp12434S434StcTtcA13AY.30.00001
ORF1ab/nsp12434S434StcTtcC33AY.390.000074
ORF1ab/nsp12434S434delTCT---33AY.40.000005
ORF1ab/nsp12434S434FtCttTt33AY.4.20.000065
ORF1ab/nsp12434S434StcTtcC33AY.4.2.10.000447
ORF1ab/nsp12434S434YtCttAt33AY.430.000013
ORF1ab/nsp12434S434StcTtcC33AY.440.000018
ORF1ab/nsp12434S434YtCttAt33B.10.000027
ORF1ab/nsp12434S434FtCttTt33B.1.1.2220.000612
ORF1ab/nsp12434S434YtCttAt33B.1.3510.000089
ORF1ab/nsp12434S434FtCttTt33P.10.000047
ORF1ab/nsp12434S434FtCttTt22AY.1030.000012
ORF1ab/nsp12434S434ATctGct22AY.1050.001286
ORF1ab/nsp12434S434PTctCct22AY.1190.000071
ORF1ab/nsp12434S434StcTtcC22AY.1190.000071
ORF1ab/nsp12434S434PTctCct22AY.230.000139
ORF1ab/nsp12434S434StcTtcC22AY.290.000032
ORF1ab/nsp12434S434ATctGct22AY.30.00002
ORF1ab/nsp12434S434FtCttTt22AY.330.000134
ORF1ab/nsp12434S434FtCttTt22AY.340.000194
ORF1ab/nsp12434S434FtCttTt22AY.39.10.000079
ORF1ab/nsp12434S434FtCttTt22AY.420.00008
ORF1ab/nsp12434S434StcTtcC22AY.450.000243
ORF1ab/nsp12434S434StcTtcC22AY.46.60.000144
ORF1ab/nsp12434S434PTctCct22AY.50.000041
ORF1ab/nsp12434S434FtCttTt22AY.630.000774
ORF1ab/nsp12434S434FtCttTt22AY.670.000929
ORF1ab/nsp12434S434PTctCct22B.1.1.10.000653
ORF1ab/nsp12434S434YtCttAt22B.1.1.3550.030769
ORF1ab/nsp12434S434PTctCct22B.1.1.410.012658
ORF1ab/nsp12434S434FtCttTt22B.1.1.4640.002946
ORF1ab/nsp12434S434FtCttTt22B.1.1.5190.000079
ORF1ab/nsp12434S434YtCttAt22B.1.1.5190.000079
ORF1ab/nsp12434S434CtCttGt22B.1.1.70.000002
ORF1ab/nsp12434S434delTCT---22B.1.1770.000026
ORF1ab/nsp12434S434FtCttTt22B.1.177.40.000422
ORF1ab/nsp12434S434FtCttTt22B.1.177.730.001133
ORF1ab/nsp12434S434FtCttTt22B.1.2430.000139
ORF1ab/nsp12434S434FtCttTt22B.1.4270.000101
ORF1ab/nsp12434S434FtCttTt22B.1.5960.000174
ORF1ab/nsp12434S434delTCT---22B.1.617.20.000008
ORF1ab/nsp12434S434ATctGct22B.1.617.20.000008
ORF1ab/nsp12434S434PTctCct22P.10.000032
ORF1ab/nsp12434S434FtCttTt110.055556
ORF1ab/nsp12434S434YtCttAt11A0.000387
ORF1ab/nsp12434S434StcTtcC11A.2.40.003367
ORF1ab/nsp12434S434del1Tct-ct11All0
ORF1ab/nsp12434S434RTCtCGt11All0
ORF1ab/nsp12434S434del2TCt--t11All0
ORF1ab/nsp12434S434PTctCct11AY.1020.000027
ORF1ab/nsp12434S434YtCttAt11AY.1020.000027
ORF1ab/nsp12434S434PTctCct11AY.1030.000006
ORF1ab/nsp12434S434StcTtcC11AY.1040.001984
ORF1ab/nsp12434S434PTctCct11AY.1090.00074
ORF1ab/nsp12434S434FtCttTt11AY.1170.000085
ORF1ab/nsp12434S434PTctCct11AY.1170.000085
ORF1ab/nsp12434S434StcTtcC11AY.1180.000063
ORF1ab/nsp12434S434FtCttTt11AY.1190.000035
ORF1ab/nsp12434S434FtCttTt11AY.1210.000135
ORF1ab/nsp12434S434CtCttGt11AY.130.000161
ORF1ab/nsp12434S434FtCttTt11AY.130.000161
ORF1ab/nsp12434S434StcTtcC11AY.130.000161
ORF1ab/nsp12434S434ATctGct11AY.20.000356
ORF1ab/nsp12434S434FtCttTt11AY.200.000039
ORF1ab/nsp12434S434CtCttGt11AY.200.000039
ORF1ab/nsp12434S434FtCttTt11AY.230.00007
ORF1ab/nsp12434S434ATctGct11AY.230.00007
ORF1ab/nsp12434S434delTCT---11AY.250.000006
ORF1ab/nsp12434S434StcTtcC11AY.250.000006
ORF1ab/nsp12434S434FtCttTt11AY.260.000028
ORF1ab/nsp12434S434FtCttTt11AY.290.000016
ORF1ab/nsp12434S434FtCttTt11AY.3.10.000085
ORF1ab/nsp12434S434FtCttTt11AY.320.000532
ORF1ab/nsp12434S434StcTtcC11AY.340.000097
ORF1ab/nsp12434S434PTctCct11AY.360.000148
ORF1ab/nsp12434S434ATctGct11AY.390.000025
ORF1ab/nsp12434S434CtCttGt11AY.40.000002
ORF1ab/nsp12434S434StcTtcC11AY.4.20.000022
ORF1ab/nsp12434S434YtCttAt11AY.4.2.10.000149
ORF1ab/nsp12434S434YtCttAt11AY.420.00004
ORF1ab/nsp12434S434PTctCct11AY.420.00004
ORF1ab/nsp12434S434delTCT---11AY.430.000004
ORF1ab/nsp12434S434YtCttAt11AY.440.000006
ORF1ab/nsp12434S434FtCttTt11AY.460.000104
ORF1ab/nsp12434S434FtCttTt11AY.470.000031
ORF1ab/nsp12434S434StcTtcC11AY.50.000021
ORF1ab/nsp12434S434StcTtcC11AY.5.40.000277
ORF1ab/nsp12434S434YtCttAt11AY.520.000814
ORF1ab/nsp12434S434FtCttTt11AY.580.000907
ORF1ab/nsp12434S434FtCttTt11AY.610.000105
ORF1ab/nsp12434S434FtCttTt11AY.640.000595
ORF1ab/nsp12434S434StcTtcC11AY.680.000274
ORF1ab/nsp12434S434FtCttTt11AY.750.000056
ORF1ab/nsp12434S434FtCttTt11AY.820.001357
ORF1ab/nsp12434S434FtCttTt11AY.9.10.000084
ORF1ab/nsp12434S434StcTtcC11AY.9.10.000084
ORF1ab/nsp12434S434delTCT---11AY.9.20.000037
ORF1ab/nsp12434S434PTctCct11AY.9.20.000037
ORF1ab/nsp12434S434delTCT---11AY.980.000079
ORF1ab/nsp12434S434TTctAct11AY.99.20.000092
ORF1ab/nsp12434S434StcTtcC11AZ.30.00152
ORF1ab/nsp12434S434YtCttAt11B0.000128
ORF1ab/nsp12434S434StcTtcG11B0.000128
ORF1ab/nsp12434S434TTcTAcA11B.10.000009
ORF1ab/nsp12434S434ATctGct11B.10.000009
ORF1ab/nsp12434S434CtCttGt11B.10.000009
ORF1ab/nsp12434S434delTCT---11B.10.000009
ORF1ab/nsp12434S434delTCT---11B.1.10.000018
ORF1ab/nsp12434S434PTctCct11B.1.10.000018
ORF1ab/nsp12434S434FtCttTt11B.1.1.1130.006993
ORF1ab/nsp12434S434delTCT---11B.1.1.1390.022727
ORF1ab/nsp12434S434TTctAct11B.1.1.1530.001095
ORF1ab/nsp12434S434FtCttTt11B.1.1.1890.001513
ORF1ab/nsp12434S434delTCT---11B.1.1.1920.002309
ORF1ab/nsp12434S434TTctAct11B.1.1.2140.000055
ORF1ab/nsp12434S434ATctGct11B.1.1.2220.000204
ORF1ab/nsp12434S434YtCttAt11B.1.1.2410.00207
ORF1ab/nsp12434S434FtCttTt11B.1.1.2790.001121
ORF1ab/nsp12434S434FtCttTt11B.1.1.2860.002899
ORF1ab/nsp12434S434delTCT---11B.1.1.3060.000438
ORF1ab/nsp12434S434StcTtcC11B.1.1.3060.000438
ORF1ab/nsp12434S434delTCT---11B.1.1.3110.000358
ORF1ab/nsp12434S434StcTtcC11B.1.1.3160.000925
ORF1ab/nsp12434S434FtCttTt11B.1.1.3180.000302
ORF1ab/nsp12434S434FtCttTt11B.1.1.330.000421
ORF1ab/nsp12434S434FtCttTt11B.1.1.3690.000446
ORF1ab/nsp12434S434PTctCct11B.1.1.3720.000689
ORF1ab/nsp12434S434delTCT---11B.1.1.460.004367
ORF1ab/nsp12434S434RTCtCGt11B.1.1.70.000001
ORF1ab/nsp12434S434del1Tct-ct11B.1.1.70.000001
ORF1ab/nsp12434S434FtCttTt11B.1.1.700.000341
ORF1ab/nsp12434S434FtCttTt11B.1.1600.000031
ORF1ab/nsp12434S434delTCT---11B.1.160.230.004831
ORF1ab/nsp12434S434StcTtcC11B.1.1660.008475
ORF1ab/nsp12434S434PTctCct11B.1.1770.000013
ORF1ab/nsp12434S434ATcTGcG11B.1.1770.000013
ORF1ab/nsp12434S434delTCT---11B.1.177.160.000664
ORF1ab/nsp12434S434delTCT---11B.1.177.180.00116
ORF1ab/nsp12434S434delTCT---11B.1.177.40.000211
ORF1ab/nsp12434S434delTCT---11B.1.177.510.004566
ORF1ab/nsp12434S434delTCT---11B.1.177.540.000606
ORF1ab/nsp12434S434PTctCct11B.1.177.770.000726
ORF1ab/nsp12434S434PTctCct11B.1.20.000009
ORF1ab/nsp12434S434del2TCt--t11B.1.20.000009
ORF1ab/nsp12434S434YtCttAt11B.1.20.000009
ORF1ab/nsp12434S434ATctGct11B.1.20.000009
ORF1ab/nsp12434S434FtCttTt11B.1.220.001318
ORF1ab/nsp12434S434FtCttTt11B.1.2210.000071
ORF1ab/nsp12434S434StcTtcC11B.1.2410.000812
ORF1ab/nsp12434S434PTctCct11B.1.258.30.001675
ORF1ab/nsp12434S434YtCttAt11B.1.3010.005917
ORF1ab/nsp12434S434StcTtcG11B.1.3510.00003
ORF1ab/nsp12434S434FtCttTt11B.1.3510.00003
ORF1ab/nsp12434S434FtCttTt11B.1.351.20.000303
ORF1ab/nsp12434S434TTctAct11B.1.351.30.000876
ORF1ab/nsp12434S434FtCttTt11B.1.360.000146
ORF1ab/nsp12434S434YtCttAt11B.1.3690.000285
ORF1ab/nsp12434S434FtCTtTC11B.1.3770.004566
ORF1ab/nsp12434S434FtCttTt11B.1.3830.009009
ORF1ab/nsp12434S434YtCttAt11B.1.3960.000706
ORF1ab/nsp12434S434FtCttTt11B.1.4000.000429
ORF1ab/nsp12434S434ATctGct11B.1.4270.00005
ORF1ab/nsp12434S434ATctGct11B.1.4290.000024
ORF1ab/nsp12434S434YtCttAt11B.1.4290.000024
ORF1ab/nsp12434S434StcTtcG11B.1.438.10.000107
ORF1ab/nsp12434S434TTctAct11B.1.4590.004082
ORF1ab/nsp12434S434StcTtcC11B.1.4680.005714
ORF1ab/nsp12434S434delTCT---11B.1.5250.000113
ORF1ab/nsp12434S434TTctAct11B.1.5260.000024
ORF1ab/nsp12434S434FtCttTt11B.1.5570.05
ORF1ab/nsp12434S434YtCttAt11B.1.5640.000426
ORF1ab/nsp12434S434FtCttTt11B.1.5770.000687
ORF1ab/nsp12434S434FtCttTt11B.1.5880.00091
ORF1ab/nsp12434S434PTctCct11B.1.5960.000087
ORF1ab/nsp12434S434ATctGct11B.1.6090.000479
ORF1ab/nsp12434S434FtCttTt11B.1.617.10.000129
ORF1ab/nsp12434S434TTctAct11B.1.617.20.000004
ORF1ab/nsp12434S434YtCttAt11B.1.6230.000536
ORF1ab/nsp12434S434delTCT---11B.1.6300.005236
ORF1ab/nsp12434S434PTctCct11B.40.002208
ORF1ab/nsp12434S434PTctCct11C.1.10.076923
ORF1ab/nsp12434S434PTctCct11C.370.000116
ORF1ab/nsp12434S434FtCttTt11K.10.02381
ORF1ab/nsp12434S434FtCttTt11N.90.005952
ORF1ab/nsp12434S434FtCttTt11P.1.140.000048
ORF1ab/nsp12434S434FtCttTt11P.20.000187
ORF1ab/nsp12434S434PTctCct11Q.10.000126
ORF1ab/nsp12434S434FtCttTt11Q.80.000165