CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp12 : CodonNum = 428

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp12428F428FF4820FsynttCttT2149521495114722-14724
ORF1ab/nsp12428F428delF4820deldelTTC---5151114722-14724
ORF1ab/nsp12428F428del1F4820del1delttCtt-4141114722-14724
ORF1ab/nsp12428F428LF4820LnonsynttCttA1470.514722-14724
ORF1ab/nsp12428F428LF4820LnonsynTtcCtc1470.514722-14724
ORF1ab/nsp12428F428SF4820SnonsyntTctCc77114722-14724
ORF1ab/nsp12428F428IF4820InonsynTtcAtc44114722-14724
ORF1ab/nsp12428F428del2F4820del2deltTCt--22114722-14724
ORF1ab/nsp12428F428VF4820VnonsynTtcGtc11114722-14724
ORF1ab/nsp12428F428DF4820DnonsynTTcGAc11114722-14724
ORF1ab/nsp12428F428YF4820YnonsyntTctAc11114722-14724

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp12428F428FttCttT2149521495All0.004111
ORF1ab/nsp12428F428FttCttT65576557AY.40.010205
ORF1ab/nsp12428F428FttCttT39533953B.1.1.70.003539
ORF1ab/nsp12428F428FttCttT19351935B.1.5260.045481
ORF1ab/nsp12428F428FttCttT813813AY.98.10.039374
ORF1ab/nsp12428F428FttCttT575575B.1.617.20.002165
ORF1ab/nsp12428F428FttCttT567567AY.30.00564
ORF1ab/nsp12428F428FttCttT469469B.1.20.00413
ORF1ab/nsp12428F428FttCttT373373AY.430.001653
ORF1ab/nsp12428F428FttCttT349349AY.1030.002167
ORF1ab/nsp12428F428FttCttT291291AY.440.001771
ORF1ab/nsp12428F428FttCttT281281B.1.351.20.085023
ORF1ab/nsp12428F428FttCttT278278AY.250.001672
ORF1ab/nsp12428F428FttCttT276276AY.50.005699
ORF1ab/nsp12428F428FttCttT254254B.10.002327
ORF1ab/nsp12428F428FttCttT244244B.1.1770.003213
ORF1ab/nsp12428F428FttCttT235235B.1.3510.006986
ORF1ab/nsp12428F428FttCttT220220B.1.1.1811
ORF1ab/nsp12428F428FttCttT214214P.10.003371
ORF1ab/nsp12428F428FttCttT146146B.1.10.002649
ORF1ab/nsp12428F428FttCttT108108B.1.258.170.011229
ORF1ab/nsp12428F428FttCttT9898B.1.1600.003056
ORF1ab/nsp12428F428FttCttT9292B.1.4270.004646
ORF1ab/nsp12428F428FttCttT9090AY.4.20.001952
ORF1ab/nsp12428F428FttCttT8686B.1.4290.002023
ORF1ab/nsp12428F428FttCttT7979B0.010097
ORF1ab/nsp12428F428FttCttT7878AY.390.001927
ORF1ab/nsp12428F428FttCttT7171B.1.36.240.438272
ORF1ab/nsp12428F428FttCttT5858AY.1020.001538
ORF1ab/nsp12428F428FttCttT5555AY.290.000868
ORF1ab/nsp12428F428FttCttT5454B.1.1.5190.002144
ORF1ab/nsp12428F428FttCttT5454B.1.177.560.036048
ORF1ab/nsp12428F428FttCttT5454C.36.30.03063
ORF1ab/nsp12428F428FttCttT5353AE.10.602273
ORF1ab/nsp12428F428FttCttT5252C.370.006035
ORF1ab/nsp12428F428delTTC---5151All0.00001
ORF1ab/nsp12428F428FttCttT5050B.430.714286
ORF1ab/nsp12428F428FttCttT4646AY.200.001788
ORF1ab/nsp12428F428FttCttT4545AY.450.005476
ORF1ab/nsp12428F428FttCttT4545B.1.36.180.018908
ORF1ab/nsp12428F428FttCttT4444AY.260.001246
ORF1ab/nsp12428F428del1ttCtt-4141All0.000008
ORF1ab/nsp12428F428FttCttT3939B.1.177.520.068541
ORF1ab/nsp12428F428FttCttT3838B.1.5250.0043
ORF1ab/nsp12428F428FttCttT3636B.1.2340.00475
ORF1ab/nsp12428F428FttCttT3535B.1.360.005107
ORF1ab/nsp12428F428FttCttT3434AY.1130.004841
ORF1ab/nsp12428F428FttCttT3434B.1.6280.01198
ORF1ab/nsp12428F428FttCttT3333P.1.140.001577
ORF1ab/nsp12428F428FttCttT3232AY.420.001287
ORF1ab/nsp12428F428FttCttT3232B.1.177.810.006058
ORF1ab/nsp12428F428FttCttT3131AY.470.000964
ORF1ab/nsp12428F428FttCttT2929B.1.1.1700.03616
ORF1ab/nsp12428F428FttCttT2929B.1.177.70.004781
ORF1ab/nsp12428F428FttCttT2929P.20.005412
ORF1ab/nsp12428F428FttCttT2828B.1.1700.12069
ORF1ab/nsp12428F428FttCttT2727AY.1000.001242
ORF1ab/nsp12428F428FttCttT2727C.160.028632
ORF1ab/nsp12428F428FttCttT2525AY.1190.000883
ORF1ab/nsp12428F428delTTC---2525B.1.1.70.000022
ORF1ab/nsp12428F428FttCttT2424AY.1200.000892
ORF1ab/nsp12428F428FttCttT2424AY.230.001674
ORF1ab/nsp12428F428FttCttT2424AY.980.001896
ORF1ab/nsp12428F428FttCttT2424B.1.2580.001597
ORF1ab/nsp12428F428FttCttT2323B.1.1.280.007158
ORF1ab/nsp12428F428FttCttT2323B.1.177.210.001759
ORF1ab/nsp12428F428FttCttT2222B.1.177.770.015977
ORF1ab/nsp12428F428FttCttT2222R.10.00198
ORF1ab/nsp12428F428FttCttT2121AY.900.014374
ORF1ab/nsp12428F428FttCttT2121B.1.438.10.002252
ORF1ab/nsp12428F428FttCttT2020A.270.033113
ORF1ab/nsp12428F428FttCttT2020AY.60.000823
ORF1ab/nsp12428F428FttCttT2020AY.99.20.001843
ORF1ab/nsp12428F428FttCttT2020B.1.6370.001461
ORF1ab/nsp12428F428FttCttT1919AY.610.001991
ORF1ab/nsp12428F428FttCttT1919B.1.6210.001682
ORF1ab/nsp12428F428FttCttT1818AY.270.001165
ORF1ab/nsp12428F428FttCttT1818AY.29.10.003969
ORF1ab/nsp12428F428FttCttT1818AY.330.001202
ORF1ab/nsp12428F428FttCttT1818B.1.1.3060.007891
ORF1ab/nsp12428F428FttCttT1818B.1.1.500.01222
ORF1ab/nsp12428F428FttCttT1818B.1.5960.001568
ORF1ab/nsp12428F428FttCttT1717AY.7.10.001916
ORF1ab/nsp12428F428FttCttT1717B.1.1.2840.001826
ORF1ab/nsp12428F428FttCttT1717P.1.150.00395
ORF1ab/nsp12428F428FttCttT1616B.1.177.40.003377
ORF1ab/nsp12428F428FttCttT1616B.1.2210.001137
ORF1ab/nsp12428F428FttCttT1616B.1.36.290.008277
ORF1ab/nsp12428F428FttCttT1616B.1.5750.004854
ORF1ab/nsp12428F428FttCttT1515AY.1090.011095
ORF1ab/nsp12428F428FttCttT1515AY.750.00084
ORF1ab/nsp12428F428del1ttCtt-1515B.1.1.70.000013
ORF1ab/nsp12428F428FttCttT1515B.1.2430.001044
ORF1ab/nsp12428F428FttCttT1515B.1.5650.012156
ORF1ab/nsp12428F428LttCttA714All0.000001
ORF1ab/nsp12428F428LTtcCtc714All0.000001
ORF1ab/nsp12428F428FttCttT1414AY.9.20.000514
ORF1ab/nsp12428F428FttCttT1313AY.1170.001099
ORF1ab/nsp12428F428FttCttT1313AY.570.00853
ORF1ab/nsp12428F428FttCttT1313B.1.36.270.009924
ORF1ab/nsp12428F428del1ttCtt-1313B.430.185714
ORF1ab/nsp12428F428FttCttT1212AY.1110.002198
ORF1ab/nsp12428F428FttCttT1212AY.90.000811
ORF1ab/nsp12428F428FttCttT1212B.1.1280.007624
ORF1ab/nsp12428F428FttCttT1212B.1.4210.089552
ORF1ab/nsp12428F428FttCttT1212P.60.037736
ORF1ab/nsp12428F428FttCttT1111B.1.1.2140.00061
ORF1ab/nsp12428F428FttCttT1111B.1.1.2220.002244
ORF1ab/nsp12428F428FttCttT1010B.1.1390.007331
ORF1ab/nsp12428F428FttCttT1010B.1.4530.032362
ORF1ab/nsp12428F428FttCttT1010B.1.5510.012903
ORF1ab/nsp12428F428FttCttT1010B.1.617.10.00129
ORF1ab/nsp12428F428FttCttT1010N.50.017668
ORF1ab/nsp12428F428FttCttT99AY.120.10.002889
ORF1ab/nsp12428F428FttCttT99AY.160.003417
ORF1ab/nsp12428F428FttCttT99AY.460.000937
ORF1ab/nsp12428F428FttCttT99B.1.1.3110.003223
ORF1ab/nsp12428F428FttCttT99B.1.1.540.02719
ORF1ab/nsp12428F428FttCttT99B.1.177.280.066667
ORF1ab/nsp12428F428FttCttT99B.1.4970.002833
ORF1ab/nsp12428F428FttCttT99D.20.000675
ORF1ab/nsp12428F428FttCttT88AY.140.000704
ORF1ab/nsp12428F428FttCttT88AY.4.50.00086
ORF1ab/nsp12428F428FttCttT88AY.540.000763
ORF1ab/nsp12428F428FttCttT88AY.640.004762
ORF1ab/nsp12428F428FttCttT88AY.9.10.00067
ORF1ab/nsp12428F428FttCttT88B.1.1.2320.014519
ORF1ab/nsp12428F428FttCttT88B.1.177.50.009938
ORF1ab/nsp12428F428FttCttT88B.1.3110.002197
ORF1ab/nsp12428F428FttCttT88B.1.4000.003432
ORF1ab/nsp12428F428FttCttT88Q.10.001011
ORF1ab/nsp12428F428FttCttT88Q.30.00116
ORF1ab/nsp12428F428FttCttT77A.10.001973
ORF1ab/nsp12428F428StTctCc77All0.000001
ORF1ab/nsp12428F428FttCttT77AM.40.025
ORF1ab/nsp12428F428FttCttT77AY.1180.000439
ORF1ab/nsp12428F428FttCttT77AY.300.00277
ORF1ab/nsp12428F428FttCttT77AY.340.000679
ORF1ab/nsp12428F428FttCttT77AY.360.001037
ORF1ab/nsp12428F428FttCttT77B.1.3360.017073
ORF1ab/nsp12428F428FttCttT77B.1.36.170.003458
ORF1ab/nsp12428F428FttCttT77B.1.3690.001997
ORF1ab/nsp12428F428FttCttT77B.1.5880.006369
ORF1ab/nsp12428F428FttCttT66A.2.5.20.009434
ORF1ab/nsp12428F428FttCttT66AY.46.40.000987
ORF1ab/nsp12428F428FttCttT66B.1.1.1320.089552
ORF1ab/nsp12428F428FttCttT66B.1.1.2160.005343
ORF1ab/nsp12428F428FttCttT66B.1.1.4160.00543
ORF1ab/nsp12428F428FttCttT66B.1.214.20.003597
ORF1ab/nsp12428F428FttCttT66B.1.2400.001293
ORF1ab/nsp12428F428FttCttT66B.1.5770.004124
ORF1ab/nsp12428F428FttCttT55AY.1060.001674
ORF1ab/nsp12428F428FttCttT55AY.3.10.000426
ORF1ab/nsp12428F428FttCttT55AY.680.001369
ORF1ab/nsp12428F428FttCttT55B.1.1.2390.16129
ORF1ab/nsp12428F428FttCttT55B.1.1.3170.002058
ORF1ab/nsp12428F428FttCttT55B.1.1.3180.001509
ORF1ab/nsp12428F428FttCttT55B.1.1.330.002104
ORF1ab/nsp12428F428FttCttT55B.1.1.3970.011261
ORF1ab/nsp12428F428FttCttT55B.1.1470.003779
ORF1ab/nsp12428F428FttCttT55B.1.177.450.001906
ORF1ab/nsp12428F428FttCttT55B.1.2230.013889
ORF1ab/nsp12428F428FttCttT55B.1.2390.006105
ORF1ab/nsp12428F428FttCttT55B.1.4080.01845
ORF1ab/nsp12428F428FttCttT55B.1.4150.071429
ORF1ab/nsp12428F428FttCttT55B.1.4700.007022
ORF1ab/nsp12428F428FttCttT55P.1.120.00242
ORF1ab/nsp12428F428ITtcAtc44All0.000001
ORF1ab/nsp12428F428FttCttT44AY.1140.000924
ORF1ab/nsp12428F428delTTC---44AY.40.000006
ORF1ab/nsp12428F428FttCttT44AY.410.001176
ORF1ab/nsp12428F428FttCttT44AY.46.60.000289
ORF1ab/nsp12428F428FttCttT44AY.620.001743
ORF1ab/nsp12428F428FttCttT44AY.75.10.000721
ORF1ab/nsp12428F428FttCttT44AY.790.004843
ORF1ab/nsp12428F428FttCttT44B.1.1.1280.028369
ORF1ab/nsp12428F428FttCttT44B.1.1.1610.014134
ORF1ab/nsp12428F428FttCttT44B.1.1.2790.004484
ORF1ab/nsp12428F428FttCttT44B.1.1.3010.004717
ORF1ab/nsp12428F428FttCttT44B.1.1.4860.006309
ORF1ab/nsp12428F428FttCttT44B.1.1.5250.021858
ORF1ab/nsp12428F428FttCttT44B.1.1.700.001364
ORF1ab/nsp12428F428FttCttT44B.1.110.30.002874
ORF1ab/nsp12428F428FttCttT44B.1.177.870.002911
ORF1ab/nsp12428F428FttCttT44B.1.221.10.011628
ORF1ab/nsp12428F428FttCttT44B.1.258.110.001585
ORF1ab/nsp12428F428FttCttT44B.1.3750.003279
ORF1ab/nsp12428F428FttCttT44B.1.4090.003125
ORF1ab/nsp12428F428FttCttT44B.1.466.20.001565
ORF1ab/nsp12428F428FttCttT44B.1.5600.018519
ORF1ab/nsp12428F428FttCttT44B.1.5820.001963
ORF1ab/nsp12428F428FttCttT44B.1.6090.001918
ORF1ab/nsp12428F428FttCttT44P.1.10.001271
ORF1ab/nsp12428F428FttCttT44P.30.00638
ORF1ab/nsp12428F428FttCttT44Q.80.00066
ORF1ab/nsp12428F428FttCttT44W.40.005405
ORF1ab/nsp12428F428FttCttT33A.23.10.002113
ORF1ab/nsp12428F428FttCttT33AY.1050.001929
ORF1ab/nsp12428F428FttCttT33AY.130.000483
ORF1ab/nsp12428F428FttCttT33AY.190.003421
ORF1ab/nsp12428F428FttCttT33AY.23.10.001252
ORF1ab/nsp12428F428FttCttT33AY.34.10.00153
ORF1ab/nsp12428F428FttCttT33AY.350.000699
ORF1ab/nsp12428F428delTTC---33AY.4.50.000322
ORF1ab/nsp12428F428FttCttT33AY.5.30.001012
ORF1ab/nsp12428F428FttCttT33AY.5.40.00083
ORF1ab/nsp12428F428FttCttT33AY.580.002722
ORF1ab/nsp12428F428FttCttT33AY.730.001996
ORF1ab/nsp12428F428FttCttT33AY.820.004071
ORF1ab/nsp12428F428FttCttT33B.1.1.250.001706
ORF1ab/nsp12428F428FttCttT33B.1.1.2630.004673
ORF1ab/nsp12428F428FttCttT33B.1.1.2770.002276
ORF1ab/nsp12428F428FttCttT33B.1.1.2910.002227
ORF1ab/nsp12428F428FttCttT33B.1.1.2980.002586
ORF1ab/nsp12428F428FttCttT33B.1.1.3680.009259
ORF1ab/nsp12428F428FttCttT33B.1.1.3690.001339
ORF1ab/nsp12428F428FttCttT33B.1.1.3870.176471
ORF1ab/nsp12428F428FttCttT33B.1.1.390.001529
ORF1ab/nsp12428F428FttCttT33B.1.1.460.0131
ORF1ab/nsp12428F428StTctCc33B.1.1.70.000003
ORF1ab/nsp12428F428FttCttT33B.1.1.890.018182
ORF1ab/nsp12428F428FttCttT33B.1.130.007126
ORF1ab/nsp12428F428FttCttT33B.1.177.150.001893
ORF1ab/nsp12428F428FttCttT33B.1.177.570.000843
ORF1ab/nsp12428F428FttCttT33B.1.177.600.000655
ORF1ab/nsp12428F428FttCttT33B.1.177.750.003122
ORF1ab/nsp12428F428FttCttT33B.1.264.10.142857
ORF1ab/nsp12428F428FttCttT33B.1.3490.002144
ORF1ab/nsp12428F428FttCttT33B.1.351.30.002629
ORF1ab/nsp12428F428FttCttT33B.1.4990.003151
ORF1ab/nsp12428F428FttCttT33B.1.5380.024194
ORF1ab/nsp12428F428LTtcCtc23B.1.617.20.000008
ORF1ab/nsp12428F428LttCttA13B.1.617.20.000004
ORF1ab/nsp12428F428FttCttT33B.1.619.10.001924
ORF1ab/nsp12428F428del1ttCtt-33B.420.1
ORF1ab/nsp12428F428FttCttT33C.380.024194
ORF1ab/nsp12428F428FttCttT33P.1.130.002695
ORF1ab/nsp12428F428FttCttT33P.1.20.003468
ORF1ab/nsp12428F428del2tTCt--22All0
ORF1ab/nsp12428F428FttCttT22AY.100.00106
ORF1ab/nsp12428F428FttCttT22AY.1100.000225
ORF1ab/nsp12428F428FttCttT22AY.1160.000574
ORF1ab/nsp12428F428FttCttT22AY.39.10.000079
ORF1ab/nsp12428F428del1ttCtt-22AY.430.000009
ORF1ab/nsp12428F428del1ttCtt-22AY.440.000012
ORF1ab/nsp12428F428FttCttT22AY.500.001599
ORF1ab/nsp12428F428FttCttT22AY.660.002139
ORF1ab/nsp12428F428FttCttT22AY.70.000392
ORF1ab/nsp12428F428FttCttT22AY.850.000854
ORF1ab/nsp12428F428FttCttT22AY.990.002099
ORF1ab/nsp12428F428LttCttA22B.10.000018
ORF1ab/nsp12428F428FttCttT22B.1.1.10.000653
ORF1ab/nsp12428F428FttCttT22B.1.1.100.00223
ORF1ab/nsp12428F428FttCttT22B.1.1.1570.001826
ORF1ab/nsp12428F428FttCttT22B.1.1.2080.02439
ORF1ab/nsp12428F428FttCttT22B.1.1.4320.002532
ORF1ab/nsp12428F428FttCttT22B.1.1.470.010695
ORF1ab/nsp12428F428ITtcAtc22B.1.1.70.000002
ORF1ab/nsp12428F428FttCttT22B.1.1460.008475
ORF1ab/nsp12428F428FttCttT22B.1.1510.022222
ORF1ab/nsp12428F428delTTC---22B.1.1770.000026
ORF1ab/nsp12428F428FttCttT22B.1.177.120.000303
ORF1ab/nsp12428F428FttCttT22B.1.177.200.003035
ORF1ab/nsp12428F428FttCttT22B.1.177.500.00939
ORF1ab/nsp12428F428FttCttT22B.1.177.540.001213
ORF1ab/nsp12428F428FttCttT22B.1.177.860.000367
ORF1ab/nsp12428F428FttCttT22B.1.2140.007326
ORF1ab/nsp12428F428FttCttT22B.1.2410.001623
ORF1ab/nsp12428F428FttCttT22B.1.2790.001027
ORF1ab/nsp12428F428FttCttT22B.1.3240.00321
ORF1ab/nsp12428F428FttCttT22B.1.3960.001411
ORF1ab/nsp12428F428FttCttT22B.1.4040.002604
ORF1ab/nsp12428F428FttCttT22B.1.4690.00722
ORF1ab/nsp12428F428FttCttT22B.1.5030.004975
ORF1ab/nsp12428F428FttCttT22B.1.5040.0625
ORF1ab/nsp12428F428FttCttT22B.1.5230.004902
ORF1ab/nsp12428F428FttCttT22B.1.5270.007407
ORF1ab/nsp12428F428FttCttT22B.1.5680.002222
ORF1ab/nsp12428F428FttCttT22B.1.5760.001813
ORF1ab/nsp12428F428FttCttT22B.1.6060.012048
ORF1ab/nsp12428F428delTTC---22B.1.617.20.000008
ORF1ab/nsp12428F428del1ttCtt-22B.1.617.20.000008
ORF1ab/nsp12428F428FttCttT22B.1.6180.008065
ORF1ab/nsp12428F428FttCttT22B.1.621.10.001012
ORF1ab/nsp12428F428FttCttT22B.1.840.041667
ORF1ab/nsp12428F428FttCttT22B.550.0059
ORF1ab/nsp12428F428FttCttT22C.110.021277
ORF1ab/nsp12428F428FttCttT22C.390.037736
ORF1ab/nsp12428F428FttCttT22P.1.100.000539
ORF1ab/nsp12428F428FttCttT22P.1.170.000324
ORF1ab/nsp12428F428FttCttT22P.1.70.000639
ORF1ab/nsp12428F428FttCttT22P.70.008734
ORF1ab/nsp12428F428FttCttT22Q.40.00091
ORF1ab/nsp12428F428FttCttT11A0.000387
ORF1ab/nsp12428F428FttCttT11A.190.009434
ORF1ab/nsp12428F428FttCttT11A.20.000662
ORF1ab/nsp12428F428FttCttT11A.2.50.000499
ORF1ab/nsp12428F428FttCttT11A.2.5.30.010309
ORF1ab/nsp12428F428YtTctAc11All0
ORF1ab/nsp12428F428DTTcGAc11All0
ORF1ab/nsp12428F428VTtcGtc11All0
ORF1ab/nsp12428F428FttCttT11AU.30.00211
ORF1ab/nsp12428F428FttCttT11AY.10.000396
ORF1ab/nsp12428F428FttCttT11AY.1010.00049
ORF1ab/nsp12428F428LttCttA11AY.1030.000006
ORF1ab/nsp12428F428del1ttCtt-11AY.1030.000006
ORF1ab/nsp12428F428FttCttT11AY.1080.001103
ORF1ab/nsp12428F428FttCttT11AY.120.000316
ORF1ab/nsp12428F428FttCttT11AY.120.2.10.000498
ORF1ab/nsp12428F428FttCttT11AY.16.10.00047
ORF1ab/nsp12428F428delTTC---11AY.250.000006
ORF1ab/nsp12428F428del1ttCtt-11AY.29.10.000221
ORF1ab/nsp12428F428FttCttT11AY.320.000532
ORF1ab/nsp12428F428delTTC---11AY.330.000067
ORF1ab/nsp12428F428FttCttT11AY.370.000316
ORF1ab/nsp12428F428FttCttT11AY.380.000499
ORF1ab/nsp12428F428StTctCc11AY.380.000499
ORF1ab/nsp12428F428LTtcCtc11AY.390.000025
ORF1ab/nsp12428F428FttCttT11AY.39.20.001541
ORF1ab/nsp12428F428StTctCc11AY.40.000002
ORF1ab/nsp12428F428FttCttT11AY.4.40.000409
ORF1ab/nsp12428F428LttCttA11AY.4.50.000107
ORF1ab/nsp12428F428FttCttT11AY.400.000964
ORF1ab/nsp12428F428delTTC---11AY.430.000004
ORF1ab/nsp12428F428del2tTCt--11AY.440.000006
ORF1ab/nsp12428F428DTTcGAc11AY.440.000006
ORF1ab/nsp12428F428FttCttT11AY.46.20.000635
ORF1ab/nsp12428F428FttCttT11AY.46.50.000198
ORF1ab/nsp12428F428ITtcAtc11AY.470.000031
ORF1ab/nsp12428F428FttCttT11AY.480.000465
ORF1ab/nsp12428F428FttCttT11AY.520.000814
ORF1ab/nsp12428F428FttCttT11AY.530.000288
ORF1ab/nsp12428F428FttCttT11AY.550.000917
ORF1ab/nsp12428F428FttCttT11AY.560.001605
ORF1ab/nsp12428F428FttCttT11AY.590.00053
ORF1ab/nsp12428F428FttCttT11AY.630.000387
ORF1ab/nsp12428F428FttCttT11AY.670.000464
ORF1ab/nsp12428F428FttCttT11AY.690.000187
ORF1ab/nsp12428F428FttCttT11AY.700.000209
ORF1ab/nsp12428F428FttCttT11AY.710.000475
ORF1ab/nsp12428F428StTctCc11AY.750.000056
ORF1ab/nsp12428F428FttCttT11AY.840.000437
ORF1ab/nsp12428F428FttCttT11AY.870.000833
ORF1ab/nsp12428F428FttCttT11AY.880.000884
ORF1ab/nsp12428F428delTTC---11AY.9.20.000037
ORF1ab/nsp12428F428FttCttT11AY.920.000287
ORF1ab/nsp12428F428FttCttT11AY.950.000761
ORF1ab/nsp12428F428FttCttT11AZ.10.000867
ORF1ab/nsp12428F428delTTC---11B.10.000009
ORF1ab/nsp12428F428StTctCc11B.10.000009
ORF1ab/nsp12428F428delTTC---11B.1.10.000018
ORF1ab/nsp12428F428FttCttT11B.1.1.1010.01
ORF1ab/nsp12428F428LttCttA11B.1.1.1530.001095
ORF1ab/nsp12428F428FttCttT11B.1.1.1530.001095
ORF1ab/nsp12428F428FttCttT11B.1.1.1650.015385
ORF1ab/nsp12428F428FttCttT11B.1.1.1760.000439
ORF1ab/nsp12428F428FttCttT11B.1.1.1920.002309
ORF1ab/nsp12428F428FttCttT11B.1.1.2190.005
ORF1ab/nsp12428F428FttCttT11B.1.1.2200.001859
ORF1ab/nsp12428F428FttCttT11B.1.1.2280.003049
ORF1ab/nsp12428F428FttCttT11B.1.1.2290.005747
ORF1ab/nsp12428F428FttCttT11B.1.1.2410.00207
ORF1ab/nsp12428F428FttCttT11B.1.1.260.005236
ORF1ab/nsp12428F428FttCttT11B.1.1.2650.003155
ORF1ab/nsp12428F428FttCttT11B.1.1.270.00565
ORF1ab/nsp12428F428FttCttT11B.1.1.2940.001266
ORF1ab/nsp12428F428FttCttT11B.1.1.2970.002237
ORF1ab/nsp12428F428FttCttT11B.1.1.30.008696
ORF1ab/nsp12428F428delTTC---11B.1.1.3060.000438
ORF1ab/nsp12428F428FttCttT11B.1.1.3160.000925
ORF1ab/nsp12428F428FttCttT11B.1.1.3290.003846
ORF1ab/nsp12428F428FttCttT11B.1.1.3470.018182
ORF1ab/nsp12428F428FttCttT11B.1.1.370.000193
ORF1ab/nsp12428F428FttCttT11B.1.1.3720.000689
ORF1ab/nsp12428F428FttCttT11B.1.1.3740.002375
ORF1ab/nsp12428F428FttCttT11B.1.1.3890.006061
ORF1ab/nsp12428F428LTtcCtc11B.1.1.3970.002252
ORF1ab/nsp12428F428FttCttT11B.1.1.3980.003226
ORF1ab/nsp12428F428FttCttT11B.1.1.4130.006897
ORF1ab/nsp12428F428FttCttT11B.1.1.4260.035714
ORF1ab/nsp12428F428FttCttT11B.1.1.4340.000349
ORF1ab/nsp12428F428FttCttT11B.1.1.4480.002033
ORF1ab/nsp12428F428delTTC---11B.1.1.460.004367
ORF1ab/nsp12428F428FttCttT11B.1.1.4640.001473
ORF1ab/nsp12428F428FttCttT11B.1.1.4660.008696
ORF1ab/nsp12428F428FttCttT11B.1.1.4870.005587
ORF1ab/nsp12428F428FttCttT11B.1.1.5000.02
ORF1ab/nsp12428F428VTtcGtc11B.1.1.70.000001
ORF1ab/nsp12428F428del2tTCt--11B.1.1.70.000001
ORF1ab/nsp12428F428LttCttA11B.1.1.70.000001
ORF1ab/nsp12428F428FttCttT11B.1.1110.001175
ORF1ab/nsp12428F428delTTC---11B.1.1600.000031
ORF1ab/nsp12428F428delTTC---11B.1.160.230.004831
ORF1ab/nsp12428F428FttCttT11B.1.160.260.002421
ORF1ab/nsp12428F428FttCttT11B.1.160.70.002079
ORF1ab/nsp12428F428LTtcCtc11B.1.1770.000013
ORF1ab/nsp12428F428del1ttCtt-11B.1.1770.000013
ORF1ab/nsp12428F428FttCttT11B.1.177.110.001698
ORF1ab/nsp12428F428delTTC---11B.1.177.160.000664
ORF1ab/nsp12428F428FttCttT11B.1.177.350.000691
ORF1ab/nsp12428F428delTTC---11B.1.177.40.000211
ORF1ab/nsp12428F428FttCttT11B.1.177.440.000519
ORF1ab/nsp12428F428delTTC---11B.1.177.540.000606
ORF1ab/nsp12428F428FttCttT11B.1.177.580.001332
ORF1ab/nsp12428F428FttCttT11B.1.177.620.001192
ORF1ab/nsp12428F428FttCttT11B.1.177.690.001484
ORF1ab/nsp12428F428delTTC---11B.1.177.690.001484
ORF1ab/nsp12428F428FttCttT11B.1.177.730.000566
ORF1ab/nsp12428F428FttCttT11B.1.177.790.002342
ORF1ab/nsp12428F428FttCttT11B.1.177.80.000752
ORF1ab/nsp12428F428FttCttT11B.1.1990.004132
ORF1ab/nsp12428F428delTTC---11B.1.20.000009
ORF1ab/nsp12428F428del1ttCtt-11B.1.20.000009
ORF1ab/nsp12428F428FttCttT11B.1.2130.014925
ORF1ab/nsp12428F428ITtcAtc11B.1.221.10.002907
ORF1ab/nsp12428F428FttCttT11B.1.258.40.003448
ORF1ab/nsp12428F428FttCttT11B.1.2640.012346
ORF1ab/nsp12428F428FttCttT11B.1.2650.001271
ORF1ab/nsp12428F428FttCttT11B.1.3200.001245
ORF1ab/nsp12428F428YtTctAc11B.1.3320.003497
ORF1ab/nsp12428F428FttCttT11B.1.36.100.004785
ORF1ab/nsp12428F428FttCttT11B.1.36.220.001208
ORF1ab/nsp12428F428FttCttT11B.1.36.310.001751
ORF1ab/nsp12428F428FttCttT11B.1.36.360.000602
ORF1ab/nsp12428F428FttCttT11B.1.3620.001541
ORF1ab/nsp12428F428FttCttT11B.1.3660.004878
ORF1ab/nsp12428F428FttCttT11B.1.3770.004566
ORF1ab/nsp12428F428FttCttT11B.1.4160.001269
ORF1ab/nsp12428F428FttCttT11B.1.4200.010417
ORF1ab/nsp12428F428FttCttT11B.1.4220.000812
ORF1ab/nsp12428F428FttCttT11B.1.4250.002994
ORF1ab/nsp12428F428FttCttT11B.1.4260.001009
ORF1ab/nsp12428F428FttCttT11B.1.4280.00102
ORF1ab/nsp12428F428FttCttT11B.1.428.30.012821
ORF1ab/nsp12428F428FttCttT11B.1.4590.004082
ORF1ab/nsp12428F428FttCttT11B.1.5240.001406
ORF1ab/nsp12428F428FttCttT11B.1.5580.004566
ORF1ab/nsp12428F428FttCttT11B.1.5610.000397
ORF1ab/nsp12428F428FttCttT11B.1.5800.004065
ORF1ab/nsp12428F428FttCttT11B.1.5900.004545
ORF1ab/nsp12428F428LTtcCtc11B.1.5950.000261
ORF1ab/nsp12428F428FttCttT11B.1.5950.000261
ORF1ab/nsp12428F428FttCttT11B.1.5970.00463
ORF1ab/nsp12428F428FttCttT11B.1.6050.005952
ORF1ab/nsp12428F428FttCttT11B.1.6150.04
ORF1ab/nsp12428F428FttCttT11B.1.6200.000946
ORF1ab/nsp12428F428FttCttT11B.1.6250.002353
ORF1ab/nsp12428F428FttCttT11B.1.6260.005714
ORF1ab/nsp12428F428FttCttT11B.1.6310.003367
ORF1ab/nsp12428F428FttCttT11B.1.90.006173
ORF1ab/nsp12428F428FttCttT11B.1.9.20.1
ORF1ab/nsp12428F428FttCttT11B.1.940.027027
ORF1ab/nsp12428F428FttCttT11B.230.002924
ORF1ab/nsp12428F428FttCttT11B.290.003509
ORF1ab/nsp12428F428FttCttT11B.350.007812
ORF1ab/nsp12428F428FttCttT11B.400.000364
ORF1ab/nsp12428F428FttCttT11B.450.003831
ORF1ab/nsp12428F428FttCttT11B.610.005747
ORF1ab/nsp12428F428FttCttT11C.1.20.004255
ORF1ab/nsp12428F428FttCttT11C.350.000774
ORF1ab/nsp12428F428FttCttT11C.37.10.002618
ORF1ab/nsp12428F428FttCttT11P.1.110.010204
ORF1ab/nsp12428F428FttCttT11P.1.160.000374
ORF1ab/nsp12428F428FttCttT11P.1.60.001946
ORF1ab/nsp12428F428LTtcCtc11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.